mRNA_M-pyrifera_M_contig102236.480.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102236.480.1
Unique NamemRNA_M-pyrifera_M_contig102236.480.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A6A5AU65_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AU65_9STRA)

HSP 1 Score: 113 bits (282), Expect = 8.650e-31
Identity = 56/82 (68.29%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    4 RLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNNVRRIENL 249
            R+T ELLRK++EH++G++S LEE++LHQ E+E+IEV+G +CRKLRILYLQNNII KIE+L H+K LRYLNLALNN+++IE L
Sbjct:    6 RITLELLRKRSEHNEGMVSTLEEIALHQEEIEKIEVIGTLCRKLRILYLQNNIIEKIEDLTHMKDLRYLNLALNNIKKIEGL 87
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A6A3PUF8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PUF8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.070e-30
Identity = 55/77 (71.43%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    4 RLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNNVR 234
            R+T ELLRK+AEH++G++S LEE+SLHQ ELE+IEV+G +CRKLRILYLQNNII K+E+L H+K+LRYLN+ALNN+R
Sbjct:    3 RITVELLRKRAEHNEGIISSLEEISLHQEELEKIEVIGTLCRKLRILYLQNNIIDKMEDLTHMKELRYLNVALNNIR 79
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A662WUB0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUB0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.500e-28
Identity = 57/82 (69.51%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    4 RLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNNVRRIENL 249
            R+T ELLRK+AEH++G++S LEE+SLHQ ELE+IEV+G +CRKL+ILYLQNNII K+E+L H+K+LRYLNLALNN+ +IE L
Sbjct:    3 RITVELLRKRAEHNEGIISTLEEISLHQEELEKIEVIGTLCRKLQILYLQNNIIEKMEDLTHMKELRYLNLALNNISKIEGL 84
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A812V938_9DINO (LRRC6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812V938_9DINO)

HSP 1 Score: 111 bits (278), Expect = 8.800e-27
Identity = 54/73 (73.97%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    4 RLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLAL 222
            RLT EL+RKKAEHHDG++ +LEE+SLHQLELE++EV+G++CRKLRILYLQNNII +IEN+ +LK LRYLN+AL
Sbjct:  420 RLTAELVRKKAEHHDGIIGDLEEISLHQLELEKLEVIGELCRKLRILYLQNNIIPRIENIHYLKDLRYLNMAL 492
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A024GMQ1_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMQ1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.080e-26
Identity = 54/81 (66.67%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    7 LTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNNVRRIENL 249
            +T ELLRK+AEH++G+LS LEE+SLHQ E+E+I+++G +CRKLRI+YLQNNII ++ENL HLK LRYLNLALNN+++I+ L
Sbjct:    4 ITPELLRKRAEHNEGMLSTLEEISLHQEEIEKIDLIGTLCRKLRIVYLQNNIISEMENLIHLKDLRYLNLALNNIKQIKGL 84
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A6A3GCM2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GCM2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.440e-26
Identity = 52/74 (70.27%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:   28 KKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNNVRRIENL 249
            K+AEH++G++S LEE+SLHQ ELE+IEV+G +CRKLRILYLQNNII K+E+L H+K+LRYLN+ALNN+R+IE L
Sbjct:    1 KRAEHNEGIISTLEEISLHQEELEKIEVIGTLCRKLRILYLQNNIIDKMEDLTHMKELRYLNVALNNIRKIEGL 74
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A7S3J1U7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J1U7_9SPIT)

HSP 1 Score: 99.8 bits (247), Expect = 1.830e-25
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    7 LTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNNVRRIENL 249
            +TEE LRKKAEH++G+LS LEE++LHQ  + +IE +   CR L+ILYLQNN+I KIEN+  LK+L YLNLA+NNVR+IE L
Sbjct:    7 ITEEFLRKKAEHNEGMLSNLEEITLHQHNITKIENIDKFCRHLKILYLQNNLIPKIENVHKLKELEYLNLAVNNVRKIEGL 87
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A2R5GEW5_9STRA (Protein tilB-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GEW5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.360e-25
Identity = 50/83 (60.24%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 MRLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNNVRRIENL 249
            +R+  EL+R+K+EH++G +++LEE++LHQLE+E+IE VG +CR+L+ILYLQNNII K+ENLQHLK+L YLN++ NN+ +IE L
Sbjct:    2 VRIDAELIRRKSEHNEGTMADLEEIALHQLEIEKIEKVGSLCRRLKILYLQNNIIGKLENLQHLKELEYLNVSQNNILKIEGL 84
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BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A3R7GRH2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GRH2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 9.110e-25
Identity = 53/72 (73.61%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    4 RLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLA 219
            R+T ELLRK+AEH++G++S LEE+SLHQ ELERIEV+G +CRKL+ILYLQNNII KIE+L H+K+LRYLNLA
Sbjct:    3 RITVELLRKRAEHNEGIISTLEEISLHQEELERIEVIGTLCRKLQILYLQNNIIEKIEDLAHMKELRYLNLA 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Match: A0A7S0DUL2_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DUL2_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.810e-24
Identity = 49/75 (65.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    4 RLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYLQNNIIFKIENLQHLKQLRYLNLALNN 228
            R+T +L+RKK+EH+DG+L  LEE+SLHQL ++RIEV+G  C+ L+ILYLQNN+I KIENL+ +K+L YLNLALNN
Sbjct:   13 RITVDLIRKKSEHNDGILENLEEISLHQLNIQRIEVLGSCCKHLKILYLQNNLIPKIENLRKMKELVYLNLALNN 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102236.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5AU65_9STRA8.650e-3168.29Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6A3PUF8_9STRA1.070e-3071.43Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A662WUB0_9STRA7.500e-2869.51Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A812V938_9DINO8.800e-2773.97LRRC6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A024GMQ1_9STRA1.080e-2666.67Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A6A3GCM2_9STRA1.440e-2670.27Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]
A0A7S3J1U7_9SPIT1.830e-2562.96Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A2R5GEW5_9STRA3.360e-2560.24Protein tilB-like n=1 Tax=Hondaea fermentalgiana T... [more]
A0A3R7GRH2_9STRA9.110e-2573.61Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7S0DUL2_9EUKA1.810e-2465.33Hypothetical protein (Fragment) n=2 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102236contigM-pyrifera_M_contig102236:398..646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue9.1e-21
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.2602
Preferred nameLRRC6
KEGG koko:K19753
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001539,GO:0001578,GO:0001655,GO:0001822,GO:0001947,GO:0002009,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003143,GO:0003146,GO:0003341,GO:0003351,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007507,GO:0007548,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008049,GO:0008150,GO:0008406,GO:0008584,GO:0009266,GO:0009628,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009953,GO:0009987,GO:0010378,GO:0016043,GO:0016545,GO:0019098,GO:0019953,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030425,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0036158,GO:0036159,GO:0036477,GO:0040011,GO:0042752,GO:0042995,GO:0043005,GO:0043226,GO:0043933,GO:0044085,GO:0044424,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045137,GO:0045433,GO:0046546,GO:0046661,GO:0048065,GO:0048513,GO:0048562,GO:0048568,GO:0048598,GO:0048608,GO:0048609,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050877,GO:0050896,GO:0050954,GO:0051179,GO:0051674,GO:0051704,GO:0060026,GO:0060027,GO:0060179,GO:0060271,GO:0060285,GO:0060287,GO:0060294,GO:0060429,GO:0060562,GO:0061371,GO:0061458,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097447,GO:0097458,GO:0097722,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.Leucine-rich repeat
EggNOG OGs3Q7IA@4776,COG4886@1,KOG0531@2759
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.1492662-CDS-M-pyrifera_M_contig102236:397..6461622815524.1492662-CDS-M-pyrifera_M_contig102236:397..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102236 398..646 +
1692277448.9121408-CDS-M-pyrifera_M_contig102236:397..6461692277448.9121408-CDS-M-pyrifera_M_contig102236:397..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102236 398..646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102236.480.1prot_M-pyrifera_M_contig102236.480.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102236 398..646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102236.480.1

>prot_M-pyrifera_M_contig102236.480.1 ID=prot_M-pyrifera_M_contig102236.480.1|Name=mRNA_M-pyrifera_M_contig102236.480.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MRLTEELLRKKAEHHDGLLSELEEVSLHQLELERIEVVGDICRKLRILYL
QNNIIFKIENLQHLKQLRYLNLALNNVRRIENL
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mRNA from alignment at M-pyrifera_M_contig102236:398..646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102236.480.1 ID=mRNA_M-pyrifera_M_contig102236.480.1|Name=mRNA_M-pyrifera_M_contig102236.480.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig102236:398..646+ (Macrocystis pyrifera P11B4 male)
ATGAGGCTGACAGAAGAGTTGTTGCGAAAGAAAGCAGAGCATCATGATGG
CTTGTTGTCAGAGTTGGAGGAAGTGTCACTTCATCAGCTTGAACTCGAGC
GTATAGAGGTAGTTGGTGACATTTGCCGAAAGCTGCGCATTTTGTACCTT
CAAAACAACATTATTTTCAAGATTGAGAACTTGCAGCACTTGAAGCAACT
GCGTTACTTGAACTTGGCCTTGAATAATGTTCGAAGGATAGAGAACTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102236:398..646+

>mRNA_M-pyrifera_M_contig102236.480.1 ID=mRNA_M-pyrifera_M_contig102236.480.1|Name=mRNA_M-pyrifera_M_contig102236.480.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig102236:398..646+ (Macrocystis pyrifera P11B4 male)
ATGAGGCTGACAGAAGAGTTGTTGCGAAAGAAAGCAGAGCATCATGATGG
CTTGTTGTCAGAGTTGGAGGAAGTGTCACTTCATCAGCTTGAACTCGAGC
GTATAGAGGTAGTTGGTGACATTTGCCGAAAGCTGCGCATTTTGTACCTT
CAAAACAACATTATTTTCAAGATTGAGAACTTGCAGCACTTGAAGCAACT
GCGTTACTTGAACTTGGCCTTGAATAATGTTCGAAGGATAGAGAACTTGA
TGAGGCTGACAGAAGAGTTGTTGCGAAAGAAAGCAGAGCATCATGATGGC
TTGTTGTCAGAGTTGGAGGAAGTGTCACTTCATCAGCTTGAACTCGAGCG
TATAGAGGTAGTTGGTGACATTTGCCGAAAGCTGCGCATTTTGTACCTTC
AAAACAACATTATTTTCAAGATTGAGAACTTGCAGCACTTGAAGCAACTG
CGTTACTTGAACTTGGCCTTGAATAATGTTCGAAGGATAGAGAACTTG
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