mRNA_M-pyrifera_M_contig102228.479.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102228.479.1
Unique NamemRNA_M-pyrifera_M_contig102228.479.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 6.480e-67
Identity = 123/205 (60.00%), Postives = 150/205 (73.17%), Query Frame = 1
Query:   46 TTVLAHSVCAEHFTSKPPMKRGGALIAPENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARP--LSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            T VL H +C +H  S PP++R GA   PEN +RLEV+ +   G LR+ EF  G+EW+  P RA++AD+LRVH++ YV ++ R  SS  P  P  L+H+DGDTAVS NS++AALRAAGSV +   RV+ G+ RNAFC VRPPGHHAG  GLVTC  +  GSHGFCL+NNVAIGAA+AR    H GVERVAIVDFDVHHGNGTE  V
Sbjct:  552 TAVLHHPLCLQHH-SCPPIRRWGADPPPENVKRLEVIYNEDSGVLRADEFS-GLEWDSNPSRAELADVLRVHDFNYVEKLERLCSSI-PEGPGSLAHLDGDTAVSHNSFEAALRAAGSVCDGVDRVMTGRNRNAFCAVRPPGHHAGTRGLVTCANDGTGSHGFCLLNNVAIGAAYARCVHRHTGVERVAIVDFDVHHGNGTEHIV 753          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A7S4IZS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZS9_9STRA)

HSP 1 Score: 217 bits (552), Expect = 7.240e-64
Identity = 120/212 (56.60%), Postives = 148/212 (69.81%), Query Frame = 1
Query:   34 PSALTTVLAHSVCAEHFTSKPPMKR--GGALIAPENPRRLEVLLSRKHGSLRSAEFGDG-VEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARP--LSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            P A T +L H +C+ H  S PP+ R  G +   PEN RRL VLL+ + G LRS EF  G   WE    RA MAD+L+VHEY YV R+ +  SS  P  P  ++ +D DTAVS+ S++AA+RAAG V EA  RV+ G  RNAFC VRPPGHHAGP G+VTC  +P GSHGFCL+NNVAIGA++AR+   + GV+RVAI+DFDVHHGNGTE  V
Sbjct:   64 PDAKTLLLCHELCSRHM-SCPPITREEGFSDPPPENVRRLRVLLNDEVGILRSGEFHPGNASWESEARRASMADVLKVHEYGYVERISQLCSSL-PDHPKAIASLDADTAVSRWSFEAAMRAAGGVCEAVDRVMSGDYRNAFCAVRPPGHHAGPRGVVTCPNDPDGSHGFCLLNNVAIGASYARSMYRNEGVKRVAIIDFDVHHGNGTEEIV 273          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A7S3Q0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M5_9STRA)

HSP 1 Score: 219 bits (557), Expect = 3.200e-62
Identity = 111/209 (53.11%), Postives = 147/209 (70.33%), Query Frame = 1
Query:   34 PSALTTVLAHSVCAEHFTSKPPMKRGGALIAPENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARP--LSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            P A T ++ H +C++H T  PP+ R      PEN RRL VLL  + G LR AEF DG +WE    RA MAD+L+VHEY Y+  + + + S  P  P  ++H+D DT +S+ S+++A+RA+GSV EA  R++ G  RNAFC VRPPGHHAGP G+V C  +P GSHGFCL+NNVAIGAA+AR    + G+++VAI+DFDVHHGNGTEA +
Sbjct:  553 PEAQTFLICHELCSQHLTC-PPISRNSTEPPPENVRRLSVLLDDEVGILRGAEF-DGCKWEGESRRAAMADVLKVHEYKYIETISQ-ICSEIPDHPNAIAHLDTDTGMSRWSFESAMRASGSVCEAVDRIMAGDFRNAFCAVRPPGHHAGPRGIVKCENDPEGSHGFCLLNNVAIGAAYARCMYRNDGIKKVAIIDFDVHHGNGTEAVI 758          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A5J4XLP6_9CHLO (Hist_deacetyl domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XLP6_9CHLO)

HSP 1 Score: 213 bits (542), Expect = 1.690e-61
Identity = 111/205 (54.15%), Postives = 142/205 (69.27%), Query Frame = 1
Query:   46 TTVLAHSVCAEHFTSKPPMKRGGALIAPENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARP--LSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            T V+A + C  H T   P+ R G  I PEN  RL+VL     G LRS+EF   +EW+    R  MADILRVHE++YVR  L+ + ++ P  P  + H+DGDTA+S  ++QAAL A G +  A  RVV+G+ RNAFC +RPPGHHAGP G+V C  +P GSHGFCL+NN+AI AA+A     HAG++RVA++DFDVHHGNGTEACV
Sbjct:  334 TLVVAPAECFGHRTCPEPIVRDGPDIPPENVNRLKVLTDPATGILRSSEFST-LEWDETSRRGCMADILRVHEWSYVRS-LQHMCASIPDIPAVVGHLDGDTAISNGTFQAALAAVGGICNAVDRVVKGEVRNAFCAIRPPGHHAGPTGVVACANDPTGSHGFCLLNNLAIAAAYAMNAHRHAGIKRVALLDFDVHHGNGTEACV 536          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A7S2UJ04_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ04_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.070e-61
Identity = 115/213 (53.99%), Postives = 147/213 (69.01%), Query Frame = 1
Query:   34 PSALTTVLAHSVCAEHFTSKPPMKRGGALIA----PENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARP--LSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            P+  T +L H +C  H T  PP+ RG  + +    PEN RRL VL++   G LR +EF DG  WE    RA ++D+LRVHEY+YV R+  A +   P  P  ++ +DGDTAVS+ S++AALRAAGSV EA  +V+ G  RN+FC VRPPGHHAGP G+V C  +P GSHGFCL+NNVAIGAA+AR    + G+ +VAI+DFDVHHGNGTE  V
Sbjct:  570 PAGSTLLLCHELCNRHKTC-PPIARGTGIASSEPPPENVRRLHVLINEDVGILRCSEF-DGCSWETEARRAAISDVLRVHEYSYVERISHACAQI-PDHPSAIAQLDGDTAVSRWSFEAALRAAGSVCEAVDKVMSGDFRNSFCAVRPPGHHAGPRGIVKCANDPEGSHGFCLLNNVAIGAAYARTMYRNDGIRKVAIIDFDVHHGNGTEEIV 779          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A7S2QZ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZ77_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.950e-61
Identity = 112/212 (52.83%), Postives = 149/212 (70.28%), Query Frame = 1
Query:   34 PSALTTVLAHSVCAEHFTSKPPMKRGGALIA---PENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARP--LSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            P+  T V+ H +C+ H T   P+ R   L +   PEN RRL VLL+ + G LR +EF +G  WE    RA MADIL++HEY+YV ++ + + S  P  P  ++ +D DTA+S+ S++ ALRA+GSV +A  RV+ G  RNAFC VRPPGHHAGP G+V C  +P GSHGFCL+NNVAIGAA+AR+   + G+++VAI+DFDVHHGNGTEA V
Sbjct:  199 PNGKTLVICHELCSRHLTCS-PISRNSMLNSDPPPENVRRLNVLLNNEVGILRCSEF-EGCVWEGEARRASMADILKIHEYSYVEKISQ-ICSELPDHPNAIATLDADTAISRWSFEGALRASGSVCDAVDRVMAGDFRNAFCAVRPPGHHAGPRGIVKCANDPEGSHGFCLLNNVAIGAAYARSMYRNDGIKKVAIIDFDVHHGNGTEAIV 407          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A8J9S9S2_9CHLO (Probable type-2 histone deacetylase 2 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S9S2_9CHLO)

HSP 1 Score: 213 bits (543), Expect = 5.860e-61
Identity = 108/201 (53.73%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   52 VLAHSVCAEHFTSKPPMKRGGALIAPENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARPLSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            ++A   C  H T   P+ RG     PEN  RL VL   + G LRS EF D ++WE  PP A ++DILRVHE++YVR +  A ++      L H+DGDTA+S  S++AAL AAG+V+ A  RVV+ + R+AFC VRPPGHHAGP GLVTC  +P GSHGFCL +N+AIGAA+A  + + AG+ RVA++DFDVHHGNGT+AC+
Sbjct:  286 LVAPDECHMHNTCPFPILRGSRSPPPENINRLHVLTDSELGILRSTEFAD-LQWETQPPHARISDILRVHEWSYVRELQNACAALGE-HDLGHLDGDTAISAGSFRAALAAAGAVIAAVDRVVKQQVRSAFCAVRPPGHHAGPTGLVTCANDPHGSHGFCLFSNLAIGAAYAMTQHQDAGIRRVALLDFDVHHGNGTQACI 484          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A7S1B8G6_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8G6_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.240e-60
Identity = 109/209 (52.15%), Postives = 149/209 (71.29%), Query Frame = 1
Query:   34 PSALTTVLAHSVCAEHFTSKPPMKRGGALIAPENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARPLSH--IDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            P + T +L H +C++H+ S PP+ RGG    PEN RRLEVL++ + G L S EF   V WE    RA MAD+L+VHEY+YV ++ R + +  P  P +   +D DT +S+ S+++A+RAAGSV EA  +V+ G  RNAFC +RPPGHHAGP G+V+C  +P GSHGFCL+NNVAIGAA+AR    + G++++AI+DFDVHHGNGTE  +
Sbjct:  315 PPSKTILLCHELCSKHY-SCPPIYRGGPDPPPENIRRLEVLINSETGILNSKEFCSCV-WETNARRASMADVLKVHEYSYVEKISR-ICNALPDHPQASFPLDPDTVISKWSFESAMRAAGSVCEAVDKVMSGDFRNAFCAIRPPGHHAGPRGIVSCLNDPEGSHGFCLLNNVAIGAAYARTMYRNDGIKKIAIIDFDVHHGNGTEEII 520          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: I0Z5S1_COCSC (Arginase/deacetylase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z5S1_COCSC)

HSP 1 Score: 211 bits (538), Expect = 2.580e-60
Identity = 109/203 (53.69%), Postives = 139/203 (68.47%), Query Frame = 1
Query:   46 TTVLAHSVCAEHFTSKPPMKRGGALIAPENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARPLSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            T ++A   C  H T   P+ RG     PEN +RL VL   + G LRSAEF D +EWE  PP A + DILRVHE++YVR  L+        + L H+DGDTA+S  S+ AAL AAG+V+ A  RVV+ + R+AFC VRPPGHHAGP G+V C   P GSHGFCL +N+AIGAA+A    + AG++RVA++DFDVHHGNGT+AC+
Sbjct:  283 TLLVAPDECHLHNTCPFPILRGSRPPPPENIKRLHVLTDSELGILRSAEFAD-LEWETWPPHARITDILRVHEWSYVR-TLQNTCGALEGQELGHLDGDTALSAGSFTAALAAAGAVIAAVDRVVKQQVRSAFCAVRPPGHHAGPTGVVPCANEPTGSHGFCLFSNLAIGAAYAMTHYQDAGIQRVALLDFDVHHGNGTQACI 483          
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Match: A0A7S2LK53_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LK53_9STRA)

HSP 1 Score: 211 bits (538), Expect = 8.420e-60
Identity = 113/212 (53.30%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   34 PSALTTVLAHSVCAEHFTSKPPMKRG---GALIAPENPRRLEVLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVSSTSPARP--LSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCLVRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVERVAIVDFDVHHGNGTEACV 654
            P   T +L H VC +H T  PP+ RG    +   PEN RRL VL++   G LR  EF  G +W     RA +AD+L+VHEYTYV +  +  S+T P  P  +  +D DT VS  S++AALRAAGSV EA  +V+ G  RNAFC +RPPGHHAGP G+VTC  +P GSHGFCL+NN+AIGAA+AR+   + G+++VAI+DFDVHHGNGTE  V
Sbjct:  435 PDGSTLILCHEVCLQHRTC-PPIVRGVEESSEPPPENVRRLNVLINNDDGILRCGEFS-GCKWNTDVRRAALADVLKVHEYTYVEKTSKLCSAT-PDHPKAIQTLDADTTVSHWSFEAALRAAGSVCEAVDKVMAGDYRNAFCAIRPPGHHAGPRGIVTCPNDPDGSHGFCLLNNIAIGAAYARSMYRNDGIKKVAIIDFDVHHGNGTEEIV 643          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102228.479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE6.480e-6760.00Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A7S4IZS9_9STRA7.240e-6456.60Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3Q0M5_9STRA3.200e-6253.11Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A5J4XLP6_9CHLO1.690e-6154.15Hist_deacetyl domain-containing protein n=1 Tax=Tr... [more]
A0A7S2UJ04_9STRA3.070e-6153.99Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2QZ77_9STRA3.950e-6152.83Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8J9S9S2_9CHLO5.860e-6153.73Probable type-2 histone deacetylase 2 at C-termina... [more]
A0A7S1B8G6_9STRA1.240e-6052.15Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
I0Z5S1_COCSC2.580e-6053.69Arginase/deacetylase n=1 Tax=Coccomyxa subellipsoi... [more]
A0A7S2LK53_9STRA8.420e-6053.30Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102228contigM-pyrifera_M_contig102228:8..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score213.0
Seed ortholog evalue1.4e-52
Seed eggNOG ortholog248742.XP_005650534.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone deacetylase
EggNOG OGs34H3D@3041,37KJB@33090,COG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.B
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size654
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.1011498-CDS-M-pyrifera_M_contig102228:7..6611622815524.1011498-CDS-M-pyrifera_M_contig102228:7..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102228 8..661 +
1692277448.8986142-CDS-M-pyrifera_M_contig102228:7..6611692277448.8986142-CDS-M-pyrifera_M_contig102228:7..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102228 8..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102228.479.1prot_M-pyrifera_M_contig102228.479.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102228 8..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102228.479.1

>prot_M-pyrifera_M_contig102228.479.1 ID=prot_M-pyrifera_M_contig102228.479.1|Name=mRNA_M-pyrifera_M_contig102228.479.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
PSSPDAPASTLPSALTTVLAHSVCAEHFTSKPPMKRGGALIAPENPRRLE
VLLSRKHGSLRSAEFGDGVEWEFAPPRADMADILRVHEYTYVRRVLRAVS
STSPARPLSHIDGDTAVSQNSWQAALRAAGSVVEATRRVVEGKARNAFCL
VRPPGHHAGPMGLVTCRRNPMGSHGFCLVNNVAIGAAFARARLEHAGVER
VAIVDFDVHHGNGTEACV
back to top

mRNA from alignment at M-pyrifera_M_contig102228:8..661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102228.479.1 ID=mRNA_M-pyrifera_M_contig102228.479.1|Name=mRNA_M-pyrifera_M_contig102228.479.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig102228:8..661+ (Macrocystis pyrifera P11B4 male)
CCTTCCTCTCCCGATGCGCCTGCCTCCACTCTCCCTTCGGCTCTCACAAC AGTGCTAGCACACAGTGTTTGCGCTGAGCATTTCACGTCAAAACCGCCCA TGAAACGGGGAGGGGCCTTGATTGCGCCAGAAAATCCAAGACGACTGGAA GTGCTGCTTTCTCGGAAACACGGTTCGTTGCGAAGTGCGGAATTTGGAGA TGGGGTGGAGTGGGAGTTCGCCCCTCCGCGCGCTGACATGGCCGATATTC TTCGCGTGCACGAATACACGTACGTTCGCCGCGTGCTTCGCGCCGTCTCC TCCACTTCTCCCGCACGCCCTCTCTCCCACATCGACGGAGATACAGCCGT GAGCCAAAATTCGTGGCAAGCGGCGCTAAGAGCTGCTGGGAGTGTGGTGG AGGCGACTCGACGGGTGGTGGAAGGCAAGGCCAGGAACGCGTTTTGCCTC GTTCGACCTCCTGGCCACCACGCTGGACCAATGGGCCTTGTCACGTGCCG ACGCAACCCTATGGGATCTCACGGGTTTTGCCTCGTGAACAACGTCGCAA TTGGCGCTGCGTTCGCCAGAGCAAGACTCGAACACGCTGGCGTCGAGAGA GTGGCCATCGTGGACTTTGACGTGCACCATGGGAACGGAACTGAAGCCTG TGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102228:8..661+

>mRNA_M-pyrifera_M_contig102228.479.1 ID=mRNA_M-pyrifera_M_contig102228.479.1|Name=mRNA_M-pyrifera_M_contig102228.479.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig102228:8..661+ (Macrocystis pyrifera P11B4 male)
CCTTCCTCTCCCGATGCGCCTGCCTCCACTCTCCCTTCGGCTCTCACAAC
AGTGCTAGCACACAGTGTTTGCGCTGAGCATTTCACGTCAAAACCGCCCA
TGAAACGGGGAGGGGCCTTGATTGCGCCAGAAAATCCAAGACGACTGGAA
GTGCTGCTTTCTCGGAAACACGGTTCGTTGCGAAGTGCGGAATTTGGAGA
TGGGGTGGAGTGGGAGTTCGCCCCTCCGCGCGCTGACATGGCCGATATTC
TTCGCGTGCACGAATACACGTACGTTCGCCGCGTGCTTCGCGCCGTCTCC
TCCACTTCTCCCGCACGCCCTCTCTCCCACATCGACGGAGATACAGCCGT
GAGCCAAAATTCGTGGCAAGCGGCGCTAAGAGCTGCTGGGAGTGTGGTGG
AGGCGACTCGACGGGTGGTGGAAGGCAAGGCCAGGAACGCGTTTTGCCTC
GTTCGACCTCCTGGCCACCACGCTGGACCAATGGGCCTTGTCACGTGCCG
ACGCAACCCTATGGGATCTCACGGGTTTTGCCTCGTGAACAACGTCGCAA
TTGGCGCTGCGTTCGCCAGAGCAAGACTCGAACACGCTGGCGTCGAGAGA
GTGGCCATCGTGGACTTTGACGTGCACCATGGGAACGGAACTGAAGCCTG
TGTCCCTTCCTCTCCCGATGCGCCTGCCTCCACTCTCCCTTCGGCTCTCA
CAACAGTGCTAGCACACAGTGTTTGCGCTGAGCATTTCACGTCAAAACCG
CCCATGAAACGGGGAGGGGCCTTGATTGCGCCAGAAAATCCAAGACGACT
GGAAGTGCTGCTTTCTCGGAAACACGGTTCGTTGCGAAGTGCGGAATTTG
GAGATGGGGTGGAGTGGGAGTTCGCCCCTCCGCGCGCTGACATGGCCGAT
ATTCTTCGCGTGCACGAATACACGTACGTTCGCCGCGTGCTTCGCGCCGT
CTCCTCCACTTCTCCCGCACGCCCTCTCTCCCACATCGACGGAGATACAG
CCGTGAGCCAAAATTCGTGGCAAGCGGCGCTAAGAGCTGCTGGGAGTGTG
GTGGAGGCGACTCGACGGGTGGTGGAAGGCAAGGCCAGGAACGCGTTTTG
CCTCGTTCGACCTCCTGGCCACCACGCTGGACCAATGGGCCTTGTCACGT
GCCGACGCAACCCTATGGGATCTCACGGGTTTTGCCTCGTGAACAACGTC
GCAATTGGCGCTGCGTTCGCCAGAGCAAGACTCGAACACGCTGGCGTCGA
GAGAGTGGCCATCGTGGACTTTGACGTGCACCATGGGAACGGAACTGAAG
CCTGTGTC
back to top