mRNA_M-pyrifera_M_contig102227.478.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102227.478.1
Unique NamemRNA_M-pyrifera_M_contig102227.478.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A2E1VPV6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VPV6_9BACT)

HSP 1 Score: 139 bits (350), Expect = 1.810e-35
Identity = 72/148 (48.65%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    1 FDHGLWTGYALEGQHADVACADCHSGPAKAAALGR----VPGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDH--AERFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHGA 426
            F+HG WTG+ALEG HA  AC  CH      +A GR      G DCA CHADVHLGQFA                 GG+T+C  CH+ +A   FA+  FDH    RF LD THA LDC+ACH+      G S VRY+PLG +C DCH A
Sbjct:  635 FEHGKWTGFALEGAHARTACTACHPSLHPPSATGRRSQRAAGRDCADCHADVHLGQFAR----------------GGSTNCASCHSSEA-TSFAIPRFDHDAQTRFALDDTHAKLDCSACHRTETARDGRSAVRYKPLGIECGDCHAA 765          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A2E1VQ79_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VQ79_9BACT)

HSP 1 Score: 135 bits (339), Expect = 5.890e-34
Identity = 69/149 (46.31%), Postives = 83/149 (55.70%), Query Frame = 1
Query:    1 FDHGLWTGYALEGQHADVACADCHSG----PAKAAALGRVPGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHAE-RFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHGAAP 432
            FDH  WT +AL G HA+ +C+ CH+      A+  +  R  G DC SCHAD H GQF                   G TDC RCH  +A   + L  FDH++ R+ LDATHA +DCA+CH   PL  GG  VRYRPLGT CADCH   P
Sbjct:  668 FDHAQWTRFALSGAHAEASCSACHTELPRKDAQGRSFARAAGRDCQSCHADPHQGQFQRE----------------GRTDCLRCHDAEAAR-WELPLFDHSQTRYPLDATHARVDCASCHPATPLQGGGQAVRYRPLGTACADCHSVLP 799          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A7Y5C5Q0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C5Q0_9BACT)

HSP 1 Score: 125 bits (313), Expect = 1.710e-30
Identity = 71/155 (45.81%), Postives = 79/155 (50.97%), Query Frame = 1
Query:    4 DHGLWTGYALEGQHADVACADCHSGPAKAAALGR---VPGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHAE--RFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCH------GAAPK 435
            DH  WTGYALEG HA V CA CH          R   V    CA+CH DVH GQFA                  G  DC RCH+  A P F    F+H +  RF LDA H  LDC  CH+P+ L  GGS +RYRPLG +C DCH      G APK
Sbjct:  554 DHATWTGYALEGGHARVDCAQCHPPSTTTGFANRRFGVASKACATCHRDVHAGQFA----------------VDGTNDCARCHS-IAQP-FRKSIFNHEQDSRFPLDAQHGKLDCGECHQPFRLDDGGSAIRYRPLGFKCQDCHNFTEPVGGAPK 690          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A518D3V1_9BACT (Doubled CXXCH motif (Paired_CXXCH_1) n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D3V1_9BACT)

HSP 1 Score: 124 bits (312), Expect = 2.570e-30
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    1 FDHGLWTGYALEGQHADVACADCHSGPAKAAALGRV----PGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHA--ERFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHG 423
            FDHGLWTG+ L+G H    C+DCH+    A   GR      G +CA CH D H GQF    VP+  PG A  QA     DC +CH       FA + F H    RF+LD THAALDCA CH   P+  G  +VRY PLGT+C DCHG
Sbjct:  629 FDHGLWTGFPLDGAHGAANCSDCHAPLRPATEAGRTWAPAAGPNCADCHQDPHGGQF---DVPSAVPG-AVAQA-----DCAKCHGDTTS--FAKLRFRHNWDSRFKLDETHAALDCAQCHSVEPIG-GVPMVRYVPLGTECTDCHG 763          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A7V7MPY8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7MPY8_9BACT)

HSP 1 Score: 124 bits (311), Expect = 3.520e-30
Identity = 66/146 (45.21%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    4 DHGLWTGYALEGQHADVACADCHSGPAKAAALGR----VPGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHAE--RFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHG 423
            +HG  TG+AL+G H + AC  CH    +A   GR      G  C +CHAD H GQF   +                 TDC RCHA D    F    FDH +  RF LDATH  LDC+ACHKP  L  G  VVRY+P+GT+C DCHG
Sbjct:  643 EHGRLTGFALQGFHRNAACGACHPPLTEADRFGRWSDRAKGRACEACHADPHAGQFRHMQK----------------TDCSRCHAEDRP--FTRPSFDHQKDSRFPLDATHRELDCSACHKPTSLRNGQRVVRYKPIGTRCQDCHG 770          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: UPI001AC15F76 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC15F76)

HSP 1 Score: 123 bits (309), Expect = 5.830e-30
Identity = 64/145 (44.14%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    4 DHGLWTGYALEGQHADVACADCHSGPAKAAALGRVPG---NDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHAE--RFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHG 423
            +H  WTGY L+G+HA   CA+CH   A+  A GR  G     CA+CH DVH GQF                   G  DC RCH  +    F    FDH    +F+LD  HA L CAACHKP     G  V+RYRPLG +C DCHG
Sbjct:  540 EHDAWTGYPLKGEHAKATCAECHPRRARPDAQGRTLGAAAKACAACHTDVHAGQFVRE----------------GVNDCARCHVEEGR--FTPSTFDHERDSQFKLDENHARLGCAACHKPVERPGGQPVIRYRPLGVRCQDCHG 666          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A518EME2_9BACT (Class III cytochrome C family protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EME2_9BACT)

HSP 1 Score: 121 bits (304), Expect = 3.140e-29
Identity = 71/152 (46.71%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    1 FDHGLWTGYALEGQHADVACADCHSGPAKAAALGRV----PGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATD------CRRCHAPDAGPGFALVGFDH-AERFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHG 423
            FDHG WTG+ LE  HA+VAC +CH+       LGR      GN C  CHAD HLGQF  P               G A D      C RCH  + GP  +LV FDH   RF LD+ HA L C  CHK      G + VRYRPLGT+C DCHG
Sbjct:  693 FDHGKWTGWPLENSHAEVACVECHAAQ-PVDPLGRTRGFAKGNRCTDCHADPHLGQFNQP-------------VKGKAADLQSDPSCVRCHTTE-GPFDSLV-FDHDTARFALDSHHAELACHQCHKTATTKDGRTAVRYRPLGTECVDCHG 828          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A518CVP8_9BACT (Class III cytochrome C family protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CVP8_9BACT)

HSP 1 Score: 121 bits (303), Expect = 4.250e-29
Identity = 70/146 (47.95%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    1 FDHGLWTGYALEGQHADVACADCHSGPAKAAA---LGRVPGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHA--ERFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHG 423
            FDH  WT +AL   HA   CA CH+ P   A    LG   G  CA CH D HLGQF                   G TD     A  A   FA + FDH    RF LDA HAALDCAACH+  PL  GG VVRY+PLGT C DCHG
Sbjct:  669 FDHDRWTEFALTDSHAAADCAACHTLPRADATGMHLGLAQGTSCADCHTDPHLGQFD----------------VNGRTDXXXXXA--APTTFADLRFDHDVDTRFPLDAQHAALDCAACHRANPLPGGGEVVRYKPLGTACVDCHG 796          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A7V1LYD7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1LYD7_9BACT)

HSP 1 Score: 119 bits (299), Expect = 1.300e-28
Identity = 63/144 (43.75%), Postives = 77/144 (53.47%), Query Frame = 1
Query:    4 DHGLWTGYALEGQHADVACADCHS--GPAKAAALGRVPGNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHAE--RFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHG 423
            +H +WTGY L G HAD AC  CH      K      +P   CA CHAD H GQ    ++              G TDC RCH   +   F+ + FDH+E  RF LD  H  L+C+ACHK Y    G  ++RYRPLGT+CADCHG
Sbjct:  523 EHEIWTGYPLRGAHADAACTGCHDVDEAKKGTEQYSIPSQTCADCHADPHAGQL---EIL-------------GRTDCSRCHVESS---FSDLVFDHSEDSRFVLDEHHNQLECSACHKAYETPVG-PIIRYRPLGTECADCHG 646          
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Match: A0A3M2AIK4_9BACT (Cytochrome_C7 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2AIK4_9BACT)

HSP 1 Score: 118 bits (296), Expect = 3.710e-28
Identity = 65/146 (44.52%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    1 FDHGLWTGYALEGQHADVACADCHSGPAKAAALGRVP----GNDCASCHADVHLGQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHAE--RFELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCH 420
            FDHG WT + L G+HA+ +C  CH   A     GR      G DCASCH D H+GQFA                  G T         A   F    FDH +  RF LDA H  LDC ACHKP+PL  GGS +RY+PLGT+C DCH
Sbjct:  647 FDHGRWTRFPLGGRHAEASCDACHPPLAGRTPTGRTHATARGLDCASCHDDPHVGQFA----------------VAGRTXXXXXXXXRA---FQPARFDHQKDSRFPLDANHVRLDCEACHKPWPLRGGGSAIRYKPLGTRCQDCH 773          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102227.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E1VPV6_9BACT1.810e-3548.65Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E1VQ79_9BACT5.890e-3446.31Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5C5Q0_9BACT1.710e-3045.81Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A518D3V1_9BACT2.570e-3048.30Doubled CXXCH motif (Paired_CXXCH_1) n=1 Tax=Planc... [more]
A0A7V7MPY8_9BACT3.520e-3045.21Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI001AC15F765.830e-3044.14Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A518EME2_9BACT3.140e-2946.71Class III cytochrome C family protein n=1 Tax=Plan... [more]
A0A518CVP8_9BACT4.250e-2947.95Class III cytochrome C family protein n=1 Tax=Plan... [more]
A0A7V1LYD7_9BACT1.300e-2843.75Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A3M2AIK4_9BACT3.710e-2844.52Cytochrome_C7 domain-containing protein n=1 Tax=Pl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102227contigM-pyrifera_M_contig102227:221..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.8
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog694427.Palpr_0869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heat shock protein binding
EggNOG OGs2FYI2@200643,4P0AH@976,COG0484@1,COG0484@2
COG Functional cat.C
Best tax levelBacteroidia
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.0653205-CDS-M-pyrifera_M_contig102227:220..6581622815524.0653205-CDS-M-pyrifera_M_contig102227:220..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102227 221..658 -
1692277448.8868303-CDS-M-pyrifera_M_contig102227:220..6581692277448.8868303-CDS-M-pyrifera_M_contig102227:220..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102227 221..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102227.478.1prot_M-pyrifera_M_contig102227.478.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102227 221..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102227.478.1

>prot_M-pyrifera_M_contig102227.478.1 ID=prot_M-pyrifera_M_contig102227.478.1|Name=mRNA_M-pyrifera_M_contig102227.478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
FDHGLWTGYALEGQHADVACADCHSGPAKAAALGRVPGNDCASCHADVHL
GQFAGPKVPNGGPGGAPNQAPGGATDCRRCHAPDAGPGFALVGFDHAERF
ELDATHAALDCAACHKPYPLSTGGSVVRYRPLGTQCADCHGAAPK*
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mRNA from alignment at M-pyrifera_M_contig102227:221..658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102227.478.1 ID=mRNA_M-pyrifera_M_contig102227.478.1|Name=mRNA_M-pyrifera_M_contig102227.478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig102227:221..658- (Macrocystis pyrifera P11B4 male)
TTCGACCATGGGCTGTGGACGGGGTATGCGCTCGAAGGCCAGCACGCGGA CGTCGCCTGCGCGGACTGCCACAGCGGCCCGGCGAAGGCGGCGGCGCTCG GGCGCGTGCCCGGCAACGACTGCGCGAGCTGCCACGCCGACGTGCACCTC GGGCAGTTCGCCGGGCCCAAGGTGCCGAATGGAGGGCCGGGCGGAGCGCC AAATCAAGCGCCGGGCGGAGCCACGGATTGCCGGCGCTGCCACGCGCCGG ACGCGGGGCCGGGCTTCGCGCTGGTGGGCTTCGACCACGCGGAGCGCTTC GAGCTCGACGCCACGCACGCGGCCCTCGACTGCGCCGCATGCCACAAGCC GTACCCGCTGTCCACCGGCGGGAGCGTCGTGCGCTACCGCCCCCTCGGCA CCCAGTGCGCCGACTGCCACGGGGCCGCGCCGAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102227:221..658-

>mRNA_M-pyrifera_M_contig102227.478.1 ID=mRNA_M-pyrifera_M_contig102227.478.1|Name=mRNA_M-pyrifera_M_contig102227.478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig102227:221..658- (Macrocystis pyrifera P11B4 male)
TTCGACCATGGGCTGTGGACGGGGTATGCGCTCGAAGGCCAGCACGCGGA
CGTCGCCTGCGCGGACTGCCACAGCGGCCCGGCGAAGGCGGCGGCGCTCG
GGCGCGTGCCCGGCAACGACTGCGCGAGCTGCCACGCCGACGTGCACCTC
GGGCAGTTCGCCGGGCCCAAGGTGCCGAATGGAGGGCCGGGCGGAGCGCC
AAATCAAGCGCCGGGCGGAGCCACGGATTGCCGGCGCTGCCACGCGCCGG
ACGCGGGGCCGGGCTTCGCGCTGGTGGGCTTCGACCACGCGGAGCGCTTC
GAGCTCGACGCCACGCACGCGGCCCTCGACTGCGCCGCATGCCACAAGCC
GTACCCGCTGTCCACCGGCGGGAGCGTCGTGCGCTACCGCCCCCTCGGCA
CCCAGTGCGCCGACTGCCACGGGGCCGCGCCGAAGTGATTCGACCATGGG
CTGTGGACGGGGTATGCGCTCGAAGGCCAGCACGCGGACGTCGCCTGCGC
GGACTGCCACAGCGGCCCGGCGAAGGCGGCGGCGCTCGGGCGCGTGCCCG
GCAACGACTGCGCGAGCTGCCACGCCGACGTGCACCTCGGGCAGTTCGCC
GGGCCCAAGGTGCCGAATGGAGGGCCGGGCGGAGCGCCAAATCAAGCGCC
GGGCGGAGCCACGGATTGCCGGCGCTGCCACGCGCCGGACGCGGGGCCGG
GCTTCGCGCTGGTGGGCTTCGACCACGCGGAGCGCTTCGAGCTCGACGCC
ACGCACGCGGCCCTCGACTGCGCCGCATGCCACAAGCCGTACCCGCTGTC
CACCGGCGGGAGCGTCGTGCGCTACCGCCCCCTCGGCACCCAGTGCGCCG
ACTGCCACGGGGCCGCGCCGAAGTGA
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