mRNA_M-pyrifera_M_contig102211.474.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102211.474.1
Unique NamemRNA_M-pyrifera_M_contig102211.474.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102211.474.1 vs. uniprot
Match: A0A7S4HVJ0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HVJ0_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 4.260e-13
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:   82 PELRFSFPLQAPT-DAVSQAVPLFCFPEDSSTLLRKPKAGRETFSFVLTTTSSAKEHAYCRRSFRETSV-DCLCIMSEQPSFNLFSQILDLVEE 357
            P + + FP      D +++A P FCFPE     ++  K   ETFSF LTT +  K   YCRR    +S  +C CI+S+  SF+LFS ILD+VEE
Sbjct:   26 PAISYKFPQVIDVNDEIAKAAPSFCFPEGQGNAVQSKK---ETFSFTLTTGTGEKRFGYCRRFVSGSSEPECYCIVSQNSSFSLFSNILDIVEE 116
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BLAST of mRNA_M-pyrifera_M_contig102211.474.1 vs. uniprot
Match: UPI0003F09E5F (suppression of tumorigenicity 5 protein-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F09E5F)

HSP 1 Score: 52.8 bits (125), Expect = 1.520e-5
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  136 AVPLFCFPEDSSTLLRKPKAGRETFSFVLTTTSSAKEHAYCRRSFRETSVDCL----CIMSEQPSFNLFSQILDLVEE 357
            A+P FCFP D++          ETFSFVLT+   ++   YCRR   E S   L    CI+S    FNL+S++LD VEE
Sbjct:  405 AIPQFCFP-DAANWAAVSAYTSETFSFVLTSIDGSRTFGYCRRLLPEGSGLRLPIVYCIVSPVGCFNLYSKLLDEVEE 481
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BLAST of mRNA_M-pyrifera_M_contig102211.474.1 vs. uniprot
Match: A0A822IQH5_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822IQH5_9NEOB)

HSP 1 Score: 50.8 bits (120), Expect = 7.470e-5
Identity = 38/114 (33.33%), Postives = 52/114 (45.61%), Query Frame = 1 
Query:   16 RIFDRFFIVSLPWPQTCSSSTKPELRFSFPLQAPTDAVSQAVPLFCFPEDSSTLLRKPKAGRETFSFVLTTTSSAKEHAYCRRSFRETSVDCLCIMSEQPSFNLFSQILDLVEE 357
            RIF+ FF V  P  Q       PEL+  FP Q         +  FCFP       R   +  + FSF LT     +   +CR S    +++C CI+S  P F LF +IL+ + E
Sbjct:   11 RIFEGFFEVLRPTTQ----DKDPELKRQFPEQFDDQDSVMTLTKFCFPFHVE---RWQNSSVQHFSFTLTDLQGYQRFGFCRLSVN--AINCTCILSCLPWFELFYKILNNIAE 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102211.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4HVJ0_9EUKA4.260e-1343.62Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI0003F09E5F1.520e-543.59suppression of tumorigenicity 5 protein-like n=1 T... [more]
A0A822IQH5_9NEOB7.470e-533.33(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102211contigM-pyrifera_M_contig102211:1..411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.2
Seed ortholog evalue9.7e-08
Seed eggNOG ortholog176946.XP_007427260.1
Preferred nameDENND2A
KEGG koko:K20161
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0006810,GO:0008150,GO:0015629,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0031267,GO:0042147,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.DENN domain-containing protein 2A
EggNOG OGs38C3D@33154,3BDB1@33208,3CTQV@33213,47Z5T@7711,497UE@7742,KOG3569@1,KOG3569@2759
COG Functional cat.T
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.905051-CDS-M-pyrifera_M_contig102211:0..1571622815522.905051-CDS-M-pyrifera_M_contig102211:0..157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102211 1..157 -
1692277448.7647233-CDS-M-pyrifera_M_contig102211:0..1571692277448.7647233-CDS-M-pyrifera_M_contig102211:0..157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102211 1..157 -
1622815522.9179926-CDS-M-pyrifera_M_contig102211:211..4111622815522.9179926-CDS-M-pyrifera_M_contig102211:211..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102211 212..411 -
1692277448.776192-CDS-M-pyrifera_M_contig102211:211..4111692277448.776192-CDS-M-pyrifera_M_contig102211:211..411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102211 212..411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102211.474.1prot_M-pyrifera_M_contig102211.474.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102211 1..411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102211.474.1

>prot_M-pyrifera_M_contig102211.474.1 ID=prot_M-pyrifera_M_contig102211.474.1|Name=mRNA_M-pyrifera_M_contig102211.474.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MDDYQRIFDRFFIVSLPWPQTCSSSTKPELRFSFPLQAPTDAVSQAVPLF
CFPEDSSTLLRKPKAGRETFSFVLTTTSSAKEHAYCRRSFRETSVDCLCI
MSEQPSFNLFSQILDLVEE
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mRNA from alignment at M-pyrifera_M_contig102211:1..411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102211.474.1 ID=mRNA_M-pyrifera_M_contig102211.474.1|Name=mRNA_M-pyrifera_M_contig102211.474.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig102211:1..411- (Macrocystis pyrifera P11B4 male)
ATGGATGACTACCAGCGTATTTTTGACCGGTTCTTCATCGTTTCCCTCCC
CTGGCCTCAAACATGCAGCTCGAGCACGAAACCGGAGCTGCGCTTCTCCT
TCCCCCTGCAGGCGCCCACCGATGCCGTGTCACAGGCAGTGCCGCTCTTC
TGCTTCCCGGAGGATTCCTCTACTCTCCTACGCAAGCCTAAGGCAGGAAG
GTAGGCGGCTCCCTCTGCCGCGCCCAGCCAGAAGCTCGCTGACCCCTTGG
GCAGAGAGACGTTCTCCTTTGTGCTAACTACGACTTCTTCTGCAAAGGAG
CACGCTTACTGTAGGCGCTCCTTCCGTGAGACCTCGGTGGATTGCCTGTG
TATCATGAGCGAGCAGCCCTCCTTCAACCTTTTCTCCCAGATACTAGACC
TGGTGGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102211:1..411-

>mRNA_M-pyrifera_M_contig102211.474.1 ID=mRNA_M-pyrifera_M_contig102211.474.1|Name=mRNA_M-pyrifera_M_contig102211.474.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig102211:1..411- (Macrocystis pyrifera P11B4 male)
ATGGATGACTACCAGCGTATTTTTGACCGGTTCTTCATCGTTTCCCTCCC
CTGGCCTCAAACATGCAGCTCGAGCACGAAACCGGAGCTGCGCTTCTCCT
TCCCCCTGCAGGCGCCCACCGATGCCGTGTCACAGGCAGTGCCGCTCTTC
TGCTTCCCGGAGGATTCCTCTACTCTCCTACGCAAGCCTAAGGCAGGAAG
ATGGATGACTACCAGCGTATTTTTGACCGGTTCTTCATCGTTTCCCTCCC
CTGGCCTCAAACATGCAGCTCGAGCACGAAACCGGAGCTGCGCTTCTCCT
TCCCCCTGCAGGCGCCCACCGATGCCGTGTCACAGGCAGTGCCGCTCTTC
TGCTTCCCGGAGGATTCCTCTACTCTCCTACGCAAGCCTAAGGCAGGAAG
AGAGACGTTCTCCTTTGTGCTAACTACGACTTCTTCTGCAAAGGAGCACG
CTTACTGTAGGCGCTCCTTCCGTGAGACCTCGGTGGATTGCCTGTGTATC
ATGAGCGAGCAGCCCTCCTTCAACCTTTTCTCCCAGATACTAGACCTGGT
GGAGGAGAGAGACGTTCTCCTTTGTGCTAACTACGACTTCTTCTGCAAAG
GAGCACGCTTACTGTAGGCGCTCCTTCCGTGAGACCTCGGTGGATTGCCT
GTGTATCATGAGCGAGCAGCCCTCCTTCAACCTTTTCTCCCAGATACTAG
ACCTGGTGGAGGAG
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