mRNA_M-pyrifera_M_contig10221.473.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10221.473.1
Unique NamemRNA_M-pyrifera_M_contig10221.473.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10221.473.1 vs. uniprot
Match: D7FR13_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR13_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.430e-12
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 GCQSHPNFGVEGDRRAIYCAKHKLKDMVNVKAP 99
            GCQSHPNFG+EGDRRA+YCAKHKL  MVNVKAP
Sbjct:  864 GCQSHPNFGIEGDRRAVYCAKHKLPGMVNVKAP 896
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10221.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR13_ECTSI3.430e-1287.88EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR13... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10221contigM-pyrifera_M_contig10221:9693..10037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.864229-CDS-M-pyrifera_M_contig10221:9692..100371622815522.864229-CDS-M-pyrifera_M_contig10221:9692..10037Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10221 9693..10037 -
1692277448.7549913-CDS-M-pyrifera_M_contig10221:9692..100371692277448.7549913-CDS-M-pyrifera_M_contig10221:9692..10037Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10221 9693..10037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10221.473.1prot_M-pyrifera_M_contig10221.473.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10221 9693..10037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10221.473.1

>prot_M-pyrifera_M_contig10221.473.1 ID=prot_M-pyrifera_M_contig10221.473.1|Name=mRNA_M-pyrifera_M_contig10221.473.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
GCQSHPNFGVEGDRRAIYCAKHKLKDMVNVKAPRCREPGCTRNPVYGHAG
DPRATYCLSHKSPLMVDVKNRCCEHPGCKHQPSFGLVGDRRANFCFAHKL
PSHVNIRRARARAS*
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mRNA from alignment at M-pyrifera_M_contig10221:9693..10037-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10221.473.1 ID=mRNA_M-pyrifera_M_contig10221.473.1|Name=mRNA_M-pyrifera_M_contig10221.473.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig10221:9693..10037- (Macrocystis pyrifera P11B4 male)
GGATGCCAATCCCACCCCAACTTCGGCGTGGAGGGGGACCGACGCGCGAT
CTACTGCGCGAAGCACAAGCTCAAGGACATGGTGAACGTCAAGGCCCCCC
GCTGCAGAGAGCCCGGGTGCACCCGTAACCCTGTCTACGGCCACGCGGGG
GACCCGAGGGCGACCTACTGCCTCTCCCACAAGAGCCCCCTCATGGTGGA
CGTCAAGAACCGCTGCTGCGAGCACCCGGGCTGCAAGCACCAGCCCTCGT
TCGGACTGGTGGGAGACCGCCGCGCTAACTTCTGCTTCGCGCACAAGCTG
CCGTCGCACGTCAACATCCGCCGCGCAAGGGCTAGGGCGAGCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10221:9693..10037-

>mRNA_M-pyrifera_M_contig10221.473.1 ID=mRNA_M-pyrifera_M_contig10221.473.1|Name=mRNA_M-pyrifera_M_contig10221.473.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig10221:9693..10037- (Macrocystis pyrifera P11B4 male)
GGATGCCAATCCCACCCCAACTTCGGCGTGGAGGGGGACCGACGCGCGAT
CTACTGCGCGAAGCACAAGCTCAAGGACATGGTGAACGTCAAGGCCCCCC
GCTGCAGAGAGCCCGGGTGCACCCGTAACCCTGTCTACGGCCACGCGGGG
GACCCGAGGGCGACCTACTGCCTCTCCCACAAGAGCCCCCTCATGGTGGA
CGTCAAGAACCGCTGCTGCGAGCACCCGGGCTGCAAGCACCAGCCCTCGT
TCGGACTGGTGGGAGACCGCCGCGCTAACTTCTGCTTCGCGCACAAGCTG
CCGTCGCACGTCAACATCCGCCGCGCAAGGGCTAGGGCGAGCTAAGGATG
CCAATCCCACCCCAACTTCGGCGTGGAGGGGGACCGACGCGCGATCTACT
GCGCGAAGCACAAGCTCAAGGACATGGTGAACGTCAAGGCCCCCCGCTGC
AGAGAGCCCGGGTGCACCCGTAACCCTGTCTACGGCCACGCGGGGGACCC
GAGGGCGACCTACTGCCTCTCCCACAAGAGCCCCCTCATGGTGGACGTCA
AGAACCGCTGCTGCGAGCACCCGGGCTGCAAGCACCAGCCCTCGTTCGGA
CTGGTGGGAGACCGCCGCGCTAACTTCTGCTTCGCGCACAAGCTGCCGTC
GCACGTCAACATCCGCCGCGCAAGGGCTAGGGCGAGCTAA
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