mRNA_M-pyrifera_M_contig102206.470.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102206.470.1
Unique NamemRNA_M-pyrifera_M_contig102206.470.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A7S3ZL34_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZL34_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.320e-16
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   10 LVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            L+ S+ +D++G+ TYLLP  GE  D+ WAP+SAA++ ++YGS  F    F EE  PGLDF+PTATI
Sbjct:   56 LIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATI 121          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A7S2RIK8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIK8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.460e-16
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   10 LVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            L+ S+ VD+VG+ TY LP VGE GDI WAP+SA ++Q++YG+   + +  +EE  PGLDFIPTATI
Sbjct:   78 LLLSLLVDLVGMSTYALPGVGEAGDIAWAPISAILVQYLYGNAALSGLALVEELLPGLDFIPTATI 143          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A7S4E380_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E380_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.160e-16
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   10 LVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            L+ S+ +D++G+ TYLLP  GE  D+ WAP+SAA++ ++YGS  F    F EE  PGLDF+PTATI
Sbjct:   56 LIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATI 121          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A5B8MJL0_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJL0_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 3.740e-15
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 WLALVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            W  L ASVA+D +G+ +Y LP +GE  D++WAP+SA ++Q IYG+ + T ++ +EE  P  DF+PTAT+
Sbjct:   87 WPKLFASVAIDAIGVSSYALPGIGESEDVVWAPISATLVQLIYGTYWLTALDLLEEGLPFSDFVPTATL 155          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A7S3E0K0_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E0K0_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 6.780e-15
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 WLALVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            W  L AS+A+D VG+ +Y  P +GE  D++W P+SAA++QF+YGS + + ++ +EE  P  DF+PTA +
Sbjct:   30 WPKLAASIAIDAVGVSSYAFPGIGETEDVVWGPISAALVQFLYGSYWLSALDLLEEGLPFTDFLPTACL 98          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A8J1ZTX8_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZTX8_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 8.940e-15
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 WLALVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            +L L+  + VD++GL +Y++P VGELGD +WAPL A IL  ++GS   T++  +EE  PG D +PTATI
Sbjct:   34 YLKLIFCLLVDLIGLASYIVPVVGELGDTVWAPLQAYILWHLFGSVRVTLLGLLEELGPGTDILPTATI 102          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A2P6NVR4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NVR4_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 1.210e-14
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   10 LVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            L+ S+ +D++GL T+L+P +GE  D++WAP SAA++ ++YGSP     NF EE  P  DFIPTATI
Sbjct:  143 LIFSIIIDLLGLLTFLIPGLGETIDVVWAPASAALVYWLYGSPLVAFANFAEEILPFTDFIPTATI 208          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: F0YF75_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF75_AURAN)

HSP 1 Score: 70.5 bits (171), Expect = 1.530e-14
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            L+  VA+D+VG  TY +PA+GE  D+ WAP+ AA++ +++G+   T   F+EE  PG DFIPTATI
Sbjct:    4 LILCVAIDLVGASTYAIPAIGEGFDVGWAPVQAALVNYLFGNGLITGFAFLEEILPGTDFIPTATI 69          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A7S3AG80_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG80_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 2.600e-14
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            L+ S+ +D++G+ TY+ P VGE GD+ WAP+SA ++  +YG+   T + F EE  PGLD IPTATI
Sbjct:   73 LLISLLIDLIGMATYVFPLVGETGDLAWAPISALLINQLYGNALITGLAFAEELLPGLDIIPTATI 138          
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Match: A0A7S1HLC4_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1HLC4_HEMAN)

HSP 1 Score: 70.5 bits (171), Expect = 6.850e-14
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 WLALVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTIINFIEEASPGLDFIPTATI 207
            W  L  S+ +D +G+ T+L+P +GE GDI WAP+S+ +L  +YGSP  + I  +EE  P  D IPTATI
Sbjct:   32 WWKLALSIMIDFIGMLTFLIPILGEFGDIFWAPMSSLLLFQMYGSPLLSGIALLEEGLPFTDLIPTATI 100          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102206.470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3ZL34_9STRA2.320e-1653.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2RIK8_9STRA3.460e-1656.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4E380_9STRA4.160e-1653.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5B8MJL0_9CHLO3.740e-1547.83Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
A0A7S3E0K0_9CHLO6.780e-1544.93Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A8J1ZTX8_9DINO8.940e-1549.28Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A2P6NVR4_9EUKA1.210e-1451.52Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
F0YF75_AURAN1.530e-1450.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3AG80_9EUKA2.600e-1450.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1HLC4_HEMAN6.850e-1447.83Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102206contigM-pyrifera_M_contig102206:351..609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog227086.JGI_V11_86471
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CZ40@1,2S8A8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.7123368-CDS-M-pyrifera_M_contig102206:350..4351622815522.7123368-CDS-M-pyrifera_M_contig102206:350..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102206 351..435 -
1692277448.702472-CDS-M-pyrifera_M_contig102206:350..4351692277448.702472-CDS-M-pyrifera_M_contig102206:350..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102206 351..435 -
1622815522.7233338-CDS-M-pyrifera_M_contig102206:487..6091622815522.7233338-CDS-M-pyrifera_M_contig102206:487..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102206 488..609 -
1692277448.7168236-CDS-M-pyrifera_M_contig102206:487..6091692277448.7168236-CDS-M-pyrifera_M_contig102206:487..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102206 488..609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102206.470.1prot_M-pyrifera_M_contig102206.470.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102206 351..609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102206.470.1

>prot_M-pyrifera_M_contig102206.470.1 ID=prot_M-pyrifera_M_contig102206.470.1|Name=mRNA_M-pyrifera_M_contig102206.470.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
WLALVASVAVDVVGLCTYLLPAVGELGDILWAPLSAAILQFIYGSPFFTI
INFIEEASPGLDFIPTATI
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mRNA from alignment at M-pyrifera_M_contig102206:351..609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102206.470.1 ID=mRNA_M-pyrifera_M_contig102206.470.1|Name=mRNA_M-pyrifera_M_contig102206.470.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=259bp|location=Sequence derived from alignment at M-pyrifera_M_contig102206:351..609- (Macrocystis pyrifera P11B4 male)
TGGTTGGCGTTGGTGGCGAGCGTGGCGGTGGACGTGGTCGGCTTGTGCAC GTACCTGCTGCCTGCAGTGGGCGAGCTCGGGGACATTCTTTGGGCCCCTC TTTCTGCAGCGATCCTCCAATTGTGAGCCTGTCCTCGCTGCTATCTCCGC GCGCATACTACTAACTTGCGACAGCATCTATGGCAGCCCTTTCTTCACGA TCATCAACTTCATCGAGGAGGCAAGCCCCGGCCTCGACTTCATCCCCACC GCCACCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102206:351..609-

>mRNA_M-pyrifera_M_contig102206.470.1 ID=mRNA_M-pyrifera_M_contig102206.470.1|Name=mRNA_M-pyrifera_M_contig102206.470.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig102206:351..609- (Macrocystis pyrifera P11B4 male)
TGGTTGGCGTTGGTGGCGAGCGTGGCGGTGGACGTGGTCGGCTTGTGCAC
GTACCTGCTGCCTGCAGTGGGCGAGCTCGGGGACATTCTTTGGGCCCCTC
TTTCTGCAGCGATCCTCCAATTTGGTTGGCGTTGGTGGCGAGCGTGGCGG
TGGACGTGGTCGGCTTGTGCACGTACCTGCTGCCTGCAGTGGGCGAGCTC
GGGGACATTCTTTGGGCCCCTCTTTCTGCAGCGATCCTCCAATTCATCTA
TGGCAGCCCTTTCTTCACGATCATCAACTTCATCGAGGAGGCAAGCCCCG
GCCTCGACTTCATCCCCACCGCCACCATCCATCTATGGCAGCCCTTTCTT
CACGATCATCAACTTCATCGAGGAGGCAAGCCCCGGCCTCGACTTCATCC
CCACCGCCACCATC
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