mRNA_M-pyrifera_M_contig102204.469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102204.469.1
Unique NamemRNA_M-pyrifera_M_contig102204.469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102204.469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102204contigM-pyrifera_M_contig102204:83..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue8.4e-09
Seed eggNOG ortholog5888.CAK88520
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs3ZD5X@5878,KOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.672985-CDS-M-pyrifera_M_contig102204:82..6611622815522.672985-CDS-M-pyrifera_M_contig102204:82..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102204 83..661 +
1692277448.6836977-CDS-M-pyrifera_M_contig102204:82..6611692277448.6836977-CDS-M-pyrifera_M_contig102204:82..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102204 83..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102204.469.1prot_M-pyrifera_M_contig102204.469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102204 83..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102204.469.1

>prot_M-pyrifera_M_contig102204.469.1 ID=prot_M-pyrifera_M_contig102204.469.1|Name=mRNA_M-pyrifera_M_contig102204.469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
QAKKQDFEYRRRTGRLETEARKARLDRSMHQVPLTYSADSIVRIGSSIML
SSNDTEGALCCSPPAGDVEKSPMSTLAVDHPCARGVFIVQALRKEDEPVD
GLLRYGMEFRLEAHPSFLADPATRLRTEPSYIGSRPRSSTCVARRSDQQS
VHLTRSRSDSRWVAQAADPRDRLRRDGCPVMAGDSLLLQHSST
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mRNA from alignment at M-pyrifera_M_contig102204:83..661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102204.469.1 ID=mRNA_M-pyrifera_M_contig102204.469.1|Name=mRNA_M-pyrifera_M_contig102204.469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig102204:83..661+ (Macrocystis pyrifera P11B4 male)
CAGGCCAAGAAACAGGACTTTGAGTACCGCAGGCGCACCGGCAGGCTTGA
AACGGAAGCGCGCAAGGCGCGGCTGGACCGCTCCATGCACCAAGTCCCGC
TCACATACAGCGCAGACTCTATCGTGCGCATTGGCTCCAGCATCATGCTG
AGCAGCAACGACACAGAGGGCGCGCTGTGCTGCAGCCCTCCAGCTGGGGA
CGTTGAGAAGTCGCCCATGTCCACGCTGGCGGTGGACCACCCTTGCGCAC
GCGGTGTCTTCATCGTGCAGGCACTGCGGAAGGAGGATGAGCCGGTCGAC
GGGTTGCTTCGCTACGGCATGGAGTTCCGGCTGGAGGCGCACCCTTCGTT
CCTTGCCGATCCAGCCACCCGCTTGCGCACTGAGCCATCGTACATTGGCT
CCAGACCGCGCAGCTCCACCTGTGTGGCGCGCAGAAGCGACCAGCAGAGC
GTCCATCTGACGCGGAGCCGGTCAGACAGCCGCTGGGTGGCACAAGCCGC
CGATCCGCGCGATCGCTTGCGTCGTGACGGCTGCCCTGTCATGGCCGGTG
ACTCGCTGCTGCTGCAGCACTCTAGCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102204:83..661+

>mRNA_M-pyrifera_M_contig102204.469.1 ID=mRNA_M-pyrifera_M_contig102204.469.1|Name=mRNA_M-pyrifera_M_contig102204.469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig102204:83..661+ (Macrocystis pyrifera P11B4 male)
CAGGCCAAGAAACAGGACTTTGAGTACCGCAGGCGCACCGGCAGGCTTGA
AACGGAAGCGCGCAAGGCGCGGCTGGACCGCTCCATGCACCAAGTCCCGC
TCACATACAGCGCAGACTCTATCGTGCGCATTGGCTCCAGCATCATGCTG
AGCAGCAACGACACAGAGGGCGCGCTGTGCTGCAGCCCTCCAGCTGGGGA
CGTTGAGAAGTCGCCCATGTCCACGCTGGCGGTGGACCACCCTTGCGCAC
GCGGTGTCTTCATCGTGCAGGCACTGCGGAAGGAGGATGAGCCGGTCGAC
GGGTTGCTTCGCTACGGCATGGAGTTCCGGCTGGAGGCGCACCCTTCGTT
CCTTGCCGATCCAGCCACCCGCTTGCGCACTGAGCCATCGTACATTGGCT
CCAGACCGCGCAGCTCCACCTGTGTGGCGCGCAGAAGCGACCAGCAGAGC
GTCCATCTGACGCGGAGCCGGTCAGACAGCCGCTGGGTGGCACAAGCCGC
CGATCCGCGCGATCGCTTGCGTCGTGACGGCTGCCCTGTCATGGCCGGTG
ACTCGCTGCTGCTGCAGCACTCTAGCACCCAGGCCAAGAAACAGGACTTT
GAGTACCGCAGGCGCACCGGCAGGCTTGAAACGGAAGCGCGCAAGGCGCG
GCTGGACCGCTCCATGCACCAAGTCCCGCTCACATACAGCGCAGACTCTA
TCGTGCGCATTGGCTCCAGCATCATGCTGAGCAGCAACGACACAGAGGGC
GCGCTGTGCTGCAGCCCTCCAGCTGGGGACGTTGAGAAGTCGCCCATGTC
CACGCTGGCGGTGGACCACCCTTGCGCACGCGGTGTCTTCATCGTGCAGG
CACTGCGGAAGGAGGATGAGCCGGTCGACGGGTTGCTTCGCTACGGCATG
GAGTTCCGGCTGGAGGCGCACCCTTCGTTCCTTGCCGATCCAGCCACCCG
CTTGCGCACTGAGCCATCGTACATTGGCTCCAGACCGCGCAGCTCCACCT
GTGTGGCGCGCAGAAGCGACCAGCAGAGCGTCCATCTGACGCGGAGCCGG
TCAGACAGCCGCTGGGTGGCACAAGCCGCCGATCCGCGCGATCGCTTGCG
TCGTGACGGCTGCCCTGTCATGGCCGGTGACTCGCTGCTGCTGCAGCACT
CTAGCACC
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