mRNA_M-pyrifera_M_contig102197.468.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102197.468.1
Unique NamemRNA_M-pyrifera_M_contig102197.468.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: A0A7S4IBM3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBM3_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 6.410e-24
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    4 QCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDE---------EDVVSWMPKKAFKRYWKHDWQGLFFDLMN-----DSNPDVDRLIGDLQTFLEKNQRQVKVELGKLNRLMQ 321
            QC++MR  EPWS+ +DLFGVCAI+HLLLH   +E VE             ED +  +PK+ FKRYW H+W+ LF DL+        +  V + I  LQ+F+    ++V+V L K ++LMQ
Sbjct:   71 QCLEMRNGEPWSYHIDLFGVCAIVHLLLHLSPIEIVEKKPSKKSANLEGIEDKLYSLPKENFKRYWSHNWELLFLDLLQVKPGVPCSEIVKKHIKSLQSFVASRSKKVRVALSKEHQLMQ 190
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: A0A251JJM4_MANES (Uncharacterized protein n=3 Tax=Manihot esculenta TaxID=3983 RepID=A0A251JJM4_MANES)

HSP 1 Score: 87.8 bits (216), Expect = 5.170e-18
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVDRLIGDLQ 255
            F+CIQM+ ++PW F++D +G+CAI+HL+LH  YME  +    +    ++PKK FKRYW  D W+ LF  L+N+S  +  +L+ +L+
Sbjct:  408 FRCIQMQENKPWRFQVDTYGLCAIVHLMLHNSYMEIEKKATSDGGYIYLPKKPFKRYWNVDLWRELFSQLLNNSPHNDKKLLQNLR 493
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: UPI0020096C44 (mitotic checkpoint serine/threonine-protein kinase BUB1-like n=5 Tax=Salvia TaxID=21880 RepID=UPI0020096C44)

HSP 1 Score: 86.7 bits (213), Expect = 1.340e-17
Identity = 40/110 (36.36%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVD--RLIGDLQTFLEKNQRQVKVELGKLNRLMQ 321
            F+CI+M+  +PW+F++D++G+C I+H++LH  YM+  ++   E    + PK+ +KRYWK D W+ LF  L+N S+PD D  +L+  L+  L+         + KL  L++
Sbjct:  422 FRCIEMQEKKPWTFQVDMYGLCVIVHMMLHNKYMKVEKIASPEGGFHYQPKEHYKRYWKVDLWKNLFTKLLN-SDPDEDHVKLLQSLRESLQDYMCSDPKLIKKLKELLE 530
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: A0A067D3C5_CITSI (Protein kinase domain-containing protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067D3C5_CITSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.380e-17
Identity = 34/86 (39.53%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVDRLIGDLQ 255
            F+CI+M+  +PW F++D +G+CAI+H++LH  YME  +    +  + ++PK +FKRYWK + W+ LF +L+N S+ +   ++ +LQ
Sbjct:  235 FRCIEMQEKKPWKFQVDTYGLCAIVHMMLHNSYMEIEKKASPDGGLVYLPKLSFKRYWKVELWKSLFTNLLNMSSGNDKEVLQNLQ 320
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: A0A0R0H4U2_SOYBN (Protein kinase domain-containing protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0H4U2_SOYBN)

HSP 1 Score: 85.5 bits (210), Expect = 2.590e-17
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVDR-LIGDL----QTFLEKNQRQVK 288
            F+CI+M  D+PW F++D +G+CAI+H++LH  YME V+    +    ++PK  FKRYW  + W+  F  ++N    D DR L+ DL    Q ++  N + +K
Sbjct:  297 FRCIEMLEDKPWKFQVDAYGLCAIVHMMLHSSYMEVVKKEQSDGSYMYLPKLPFKRYWNIELWKTFFTKMLNQYPHDDDRSLLQDLKKSFQDYMSSNPQLIK 398
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: K7LU99_SOYBN (Uncharacterized protein n=10 Tax=Glycine subgen. Soja TaxID=1462606 RepID=K7LU99_SOYBN)

HSP 1 Score: 85.5 bits (210), Expect = 3.400e-17
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVDR-LIGDL----QTFLEKNQRQVK 288
            F+CI+M  D+PW F++D +G+CAI+H++LH  YME V+    +    ++PK  FKRYW  + W+  F  ++N    D DR L+ DL    Q ++  N + +K
Sbjct:  414 FRCIEMLEDKPWKFQVDAYGLCAIVHMMLHSSYMEVVKKEQSDGSYMYLPKLPFKRYWNIELWKTFFTKMLNQYPHDDDRSLLQDLKKSFQDYMSSNPQLIK 515
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: A0A4D9AW42_SALSN (Protein kinase domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AW42_SALSN)

HSP 1 Score: 84.0 bits (206), Expect = 4.390e-17
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVDR------LIGDLQTFLEKNQRQVK 288
            F+CI+M+   PW+F++DL+G+C I+H++LH  YME  +    E    + PK  FKRYW  D W+ LF  L+N S+P+ D       L   LQ ++  +Q+ +K
Sbjct:  196 FRCIEMQEKRPWTFQVDLYGLCVIVHMMLHNKYMEIEKSASPEGGFHYQPKAHFKRYWNVDLWKNLFAKLLN-SHPNEDHRKLLQSLRESLQDYMCSDQKLIK 297
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: A0A218Y164_PUNGR (mitotic checkpoint serine/threonine-protein kinase BUB1 n=2 Tax=Punica granatum TaxID=22663 RepID=A0A218Y164_PUNGR)

HSP 1 Score: 85.1 bits (209), Expect = 4.640e-17
Identity = 39/108 (36.11%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVD-RLIGDLQTFLEKNQRQVKVELGKLNRLM 318
            F+C++M+  +PW +++D++G+C ++H++LH  YME V+     D   + PK +FKRYWK D W+ LF  L+N S+ + D  L+ D++  L+   R     + KL  L+
Sbjct:  415 FRCVEMQEKKPWKYQVDIYGLCVVVHMMLHGSYMEVVKK-SSSDGNFYKPKSSFKRYWKVDLWEKLFSKLLNTSHANYDPNLLKDIRHSLKDYMRSNPQLIRKLKELL 521
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: A0A3N7F9D9_POPTR (Uncharacterized protein n=8 Tax=Saliceae TaxID=238069 RepID=A0A3N7F9D9_POPTR)

HSP 1 Score: 84.3 bits (207), Expect = 8.620e-17
Identity = 36/106 (33.96%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHDWQGLFFDLMNDSNPDVDRLIGDLQTFLEKNQRQVKVELGKLNRLM 318
            F+C++M+  +PW+F++D +G+C +IH++LH  YME V+    +    ++PK  FKRYW   W+ LF  L+N+++ +   L+ +L+   E         L KL  L+
Sbjct:  409 FRCVEMQERKPWTFQVDTYGLCVVIHMMLHHSYMEIVKKGTSDGGYMYLPKAPFKRYWSDLWKDLFTKLLNNNSGNDCELLRNLRKSFEDYLHSDDKLLRKLKELL 514
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BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Match: UPI00098D7A85 (mitotic checkpoint serine/threonine-protein kinase BUB1 n=2 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098D7A85)

HSP 1 Score: 83.6 bits (205), Expect = 1.090e-16
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 FQCIQMRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFKRYWKHD-WQGLFFDLMNDSNPDVDR-LIGDL----QTFLEKNQRQVK 288
            F+CI+M  D+PW F++D +G+CAI+H++LH  YME V+    +    ++P+  FKRYW  + W+  F  ++N    D DR L+ DL    Q ++  N + +K
Sbjct:  265 FRCIEMLEDKPWKFQVDAYGICAIVHMMLHNSYMEIVKKEQSDGSYVYLPRLPFKRYWNIELWKTFFTKMLNQYPHDDDRRLLQDLKKSFQDYMGSNPQLIK 366
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102197.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IBM3_9EUKA6.410e-2442.50Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A251JJM4_MANES5.170e-1843.02Uncharacterized protein n=3 Tax=Manihot esculenta ... [more]
UPI0020096C441.340e-1736.36mitotic checkpoint serine/threonine-protein kinase... [more]
A0A067D3C5_CITSI2.380e-1739.53Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A0R0H4U2_SOYBN2.590e-1738.24Protein kinase domain-containing protein n=1 Tax=G... [more]
K7LU99_SOYBN3.400e-1738.24Uncharacterized protein n=10 Tax=Glycine subgen. S... [more]
A0A4D9AW42_SALSN4.390e-1738.83Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A218Y164_PUNGR4.640e-1736.11mitotic checkpoint serine/threonine-protein kinase... [more]
A0A3N7F9D9_POPTR8.620e-1733.96Uncharacterized protein n=8 Tax=Saliceae TaxID=238... [more]
UPI00098D7A851.090e-1637.25mitotic checkpoint serine/threonine-protein kinase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102197contigM-pyrifera_M_contig102197:6..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.1
Seed ortholog evalue6.7e-13
Seed eggNOG ortholog3983.cassava4.1_027321m
KEGG koko:K02178
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0000942,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0007088,GO:0007093,GO:0007094,GO:0007135,GO:0007346,GO:0008150,GO:0008152,GO:0009966,GO:0009967,GO:0009987,GO:0010564,GO:0010639,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0010965,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0022402,GO:0022414,GO:0023051,GO:0023056,GO:0030071,GO:0031577,GO:0031974,GO:0031981,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045144,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051177,GO:0051276,GO:0051321,GO:0051726,GO:0051754,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070601,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0098687,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902531,GO:1902533,GO:1903046,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001233,GO:2001235,GO:2001242,GO:2001244,GO:2001251
EggNOG free text desc.checkpoint serine threonine-protein kinase
EggNOG OGs37SVN@33090,3GEEY@35493,4JE95@91835,KOG1166@1,KOG1166@2759
EC2.7.11.1
COG Functional cat.D
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Exons1
Model size324
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.6228833-UTR-M-pyrifera_M_contig102197:5..201622815522.6228833-UTR-M-pyrifera_M_contig102197:5..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102197 6..20 +
1692277448.6554644-UTR-M-pyrifera_M_contig102197:5..201692277448.6554644-UTR-M-pyrifera_M_contig102197:5..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102197 6..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.6338553-CDS-M-pyrifera_M_contig102197:20..3291622815522.6338553-CDS-M-pyrifera_M_contig102197:20..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102197 21..329 +
1692277448.6674986-CDS-M-pyrifera_M_contig102197:20..3291692277448.6674986-CDS-M-pyrifera_M_contig102197:20..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102197 21..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102197.468.1prot_M-pyrifera_M_contig102197.468.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102197 21..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102197.468.1

>prot_M-pyrifera_M_contig102197.468.1 ID=prot_M-pyrifera_M_contig102197.468.1|Name=mRNA_M-pyrifera_M_contig102197.468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MRTDEPWSFELDLFGVCAIIHLLLHKDYMEAVEVVDEEDVVSWMPKKAFK
RYWKHDWQGLFFDLMNDSNPDVDRLIGDLQTFLEKNQRQVKVELGKLNRL
MQ*
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mRNA from alignment at M-pyrifera_M_contig102197:6..329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102197.468.1 ID=mRNA_M-pyrifera_M_contig102197.468.1|Name=mRNA_M-pyrifera_M_contig102197.468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig102197:6..329+ (Macrocystis pyrifera P11B4 male)
TTCCAGTGCATCCAAATGCGCACTGACGAGCCATGGAGCTTTGAGCTCGA
CCTCTTTGGAGTCTGCGCCATCATCCACCTTCTTCTCCACAAGGACTACA
TGGAGGCCGTCGAAGTGGTCGACGAGGAAGATGTGGTGTCCTGGATGCCC
AAGAAGGCATTCAAGCGCTACTGGAAGCACGACTGGCAGGGCCTCTTCTT
TGACCTCATGAACGACAGCAACCCCGACGTCGACCGCCTCATTGGAGACC
TCCAGACCTTCCTTGAGAAGAACCAGAGGCAGGTCAAGGTCGAGCTGGGC
AAGCTCAACCGTCTCATGCAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102197:6..329+

>mRNA_M-pyrifera_M_contig102197.468.1 ID=mRNA_M-pyrifera_M_contig102197.468.1|Name=mRNA_M-pyrifera_M_contig102197.468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig102197:6..329+ (Macrocystis pyrifera P11B4 male)
ATGCGCACTGACGAGCCATGGAGCTTTGAGCTCGACCTCTTTGGAGTCTG
CGCCATCATCCACCTTCTTCTCCACAAGGACTACATGGAGGCCGTCGAAG
TGGTCGACGAGGAAGATGTGGTGTCCTGGATGCCCAAGAAGGCATTCAAG
CGCTACTGGAAGCACGACTGGCAGGGCCTCTTCTTTGACCTCATGAACGA
CAGCAACCCCGACGTCGACCGCCTCATTGGAGACCTCCAGACCTTCCTTG
AGAAGAACCAGAGGCAGGTCAAGGTCGAGCTGGGCAAGCTCAACCGTCTC
ATGCAGTAGATGCGCACTGACGAGCCATGGAGCTTTGAGCTCGACCTCTT
TGGAGTCTGCGCCATCATCCACCTTCTTCTCCACAAGGACTACATGGAGG
CCGTCGAAGTGGTCGACGAGGAAGATGTGGTGTCCTGGATGCCCAAGAAG
GCATTCAAGCGCTACTGGAAGCACGACTGGCAGGGCCTCTTCTTTGACCT
CATGAACGACAGCAACCCCGACGTCGACCGCCTCATTGGAGACCTCCAGA
CCTTCCTTGAGAAGAACCAGAGGCAGGTCAAGGTCGAGCTGGGCAAGCTC
AACCGTCTCATGCAGTAG
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