mRNA_M-pyrifera_M_contig102196.467.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102196.467.1
Unique NamemRNA_M-pyrifera_M_contig102196.467.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A7G6YLE0_9BACT (DUF2183 domain-containing protein n=4 Tax=Hymenobacter TaxID=89966 RepID=A0A7G6YLE0_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 3.270e-9
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVREMLDGTPFEQ-PITIVEDLLEIVE 252
            HK++ I  +L + P    VLIGD+ Q+DA  +  V+  HP R +A Y+RDV +P +A LV ++ D    E   + +V+D ++  E
Sbjct:  267 HKLKEIDNLLLTYPKLPFVLIGDSGQEDANIYREVVRRHPGRVLAIYIRDVQLPNRAQLVEKVSDDLRDENVEMLLVQDTVQAAE 351          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A0Q9ZQ71_9FLAO (DUF2183 domain-containing protein n=5 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A0Q9ZQ71_9FLAO)

HSP 1 Score: 60.8 bits (146), Expect = 5.830e-9
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVREMLDGTPFEQ-PITIVEDLLEIV 249
            HK + I+ IL++ PN   +LIGD+ + DA+ ++ +  +HP+R +A YLR V   ++ + VR ++D   FE  P+ +VE   E V
Sbjct:  254 HKQKEINNILQTYPNMEFILIGDSGEHDASIYTEIAAQHPDRILAIYLRSVNHKKQMNRVRSIIDN--FETTPVLMVESSQEAV 335          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: UPI0009ECB945 (DUF2183 domain-containing protein n=1 Tax=Rufibacter sp. DG15C TaxID=1379909 RepID=UPI0009ECB945)

HSP 1 Score: 60.5 bits (145), Expect = 8.500e-9
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVR---EMLDGT 201
            HK + I  IL + P+   VLIGD+ QQDA  +  VI E P R I  Y+RDV +PE+A++V    E L GT
Sbjct:  267 HKFKEIQNILLTYPHLNFVLIGDSGQQDAPIYKEVIKEFPGRIICVYIRDVELPERAEIVNVITEELKGT 336          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A5N1ISG6_9BACT (DUF2183 domain-containing protein n=1 Tax=Adhaeribacter soli TaxID=2607655 RepID=A0A5N1ISG6_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.960e-8
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVREMLDG 198
            HK++ I  +L + P    VL+GD+ Q+DA  + TV+  HP R +A Y+RDV + E+A++V  + +G
Sbjct:  266 HKLKEIENLLITYPKLNFVLVGDSGQEDARIYETVVKNHPGRILAIYIRDVKLAERAEIVVGISEG 331          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A6P1NVK6_9BACT (DUF2183 domain-containing protein n=1 Tax=Nibribacter ruber TaxID=2698458 RepID=A0A6P1NVK6_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 7.610e-8
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVR---EMLDGT 201
            HK + I  IL + P+   +LIGD+ QQDA  +  V+ + P R +  Y+RDV +PE+A++V+   E L GT
Sbjct:  267 HKFKEIQNILLTYPHLNFILIGDSGQQDAPIYKEVVKQFPGRVLCIYIRDVELPERAEVVKVISEELKGT 336          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A3M9MLV4_9BACT (DUF2183 domain-containing protein n=2 Tax=Rufibacter TaxID=1379908 RepID=A0A3M9MLV4_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.420e-7
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVR---EMLDGT 201
            HK + I  IL + P+   VLIGD+ QQDA  +  VI + P R I  Y+RDV +P++A +V    E L GT
Sbjct:  268 HKFKEIQNILLTYPHLNFVLIGDSGQQDAPIYKEVIKQFPGRIICVYIRDVELPDRAQMVTTISEELKGT 337          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: UPI00178C4293 (DUF2183 domain-containing protein n=1 Tax=Rufibacter sp. LB8 TaxID=2777781 RepID=UPI00178C4293)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-7
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVREMLDGTPFEQPITIVED 234
            HK + I  I  + P+   VLIGD+ Q+DA  +  VI + P R I  Y+RDV +PE+A++V ++ +       + +V+D
Sbjct:  268 HKFKEIQNIFLTYPHLNFVLIGDSGQEDAPIYREVIKQFPGRVICTYIRDVELPERAEIVTKITEELKGTVDMILVKD 345          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A1L6QZ37_9FLAO (DUF2183 domain-containing protein n=8 Tax=Salegentibacter TaxID=143222 RepID=A0A1L6QZ37_9FLAO)

HSP 1 Score: 55.8 bits (133), Expect = 3.510e-7
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVREMLDGTPFEQ-PITIVEDLLEIVE 252
            HK + I+ IL++ P    +LIGD+ + DA+ ++ +  ++P+R +A YLR V   ++   VR ++D   FE  P+ +VE   E VE
Sbjct:  254 HKQKEIANILKTYPEMNFILIGDSGEHDASIYTEIAAQYPDRILAIYLRSVKHKKQMSRVRSIIDN--FETTPVLMVETSQETVE 336          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A1M5LA10_9FLAO (Phosphatidate phosphatase APP1 n=1 Tax=Salegentibacter echinorum TaxID=1073325 RepID=A0A1M5LA10_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 1.230e-6
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADLVREMLDGTPFEQ-PITIVEDLLEIVE 252
            HK + I+ IL+S P+   +LIGD+ + DA+ ++ +  + P+R +A YLR V   ++   VR ++D   FE  P+ +VE   E VE
Sbjct:  254 HKQKEITNILKSYPSLKFILIGDSGEHDASIYTEIAEQFPDRILAIYLRSVKHKKQMRRVRSIIDN--FETTPMLMVESSHEAVE 336          
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Match: A0A2M6GGD3_9BACT (DUF2183 domain-containing protein n=1 Tax=Cytophagales bacterium CG18_big_fil_WC_8_21_14_2_50_42_9 TaxID=1973956 RepID=A0A2M6GGD3_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.220e-6
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRDVGVPEKADL 177
            HK + I  IL + P    VLIGD+ Q+D   +  V+ ++P R +A Y+RDV +PE+A +
Sbjct:  266 HKFKEIENILITYPQLNFVLIGDSGQEDPVIYREVVKKYPTRILAIYIRDVQLPERAQI 324          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102196.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A7G6YLE0_9BACT3.270e-936.47DUF2183 domain-containing protein n=4 Tax=Hymenoba... [more]
A0A0Q9ZQ71_9FLAO5.830e-936.90DUF2183 domain-containing protein n=5 Tax=Flavobac... [more]
UPI0009ECB9458.500e-947.14DUF2183 domain-containing protein n=1 Tax=Rufibact... [more]
A0A5N1ISG6_9BACT2.960e-839.39DUF2183 domain-containing protein n=1 Tax=Adhaerib... [more]
A0A6P1NVK6_9BACT7.610e-841.43DUF2183 domain-containing protein n=1 Tax=Nibribac... [more]
A0A3M9MLV4_9BACT1.420e-744.29DUF2183 domain-containing protein n=2 Tax=Rufibact... [more]
UPI00178C42931.940e-735.90DUF2183 domain-containing protein n=1 Tax=Rufibact... [more]
A0A1L6QZ37_9FLAO3.510e-735.29DUF2183 domain-containing protein n=8 Tax=Salegent... [more]
A0A1M5LA10_9FLAO1.230e-636.47Phosphatidate phosphatase APP1 n=1 Tax=Salegentiba... [more]
A0A2M6GGD3_9BACT3.220e-640.68DUF2183 domain-containing protein n=1 Tax=Cytophag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102196contigM-pyrifera_M_contig102196:410..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog1356852.N008_18495
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterized conserved protein (DUF2183)
EggNOG OGs47K82@768503,4NFZ6@976,COG4850@1,COG4850@2
COG Functional cat.S
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.584924-CDS-M-pyrifera_M_contig102196:409..6611622815522.584924-CDS-M-pyrifera_M_contig102196:409..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102196 410..661 -
1692277448.6440215-CDS-M-pyrifera_M_contig102196:409..6611692277448.6440215-CDS-M-pyrifera_M_contig102196:409..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102196 410..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102196.467.1prot_M-pyrifera_M_contig102196.467.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102196 410..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102196.467.1

>prot_M-pyrifera_M_contig102196.467.1 ID=prot_M-pyrifera_M_contig102196.467.1|Name=mRNA_M-pyrifera_M_contig102196.467.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
HKVRGISTILESAPNAAVVLIGDTSQQDATAFSTVIGEHPERSIAAYLRD
VGVPEKADLVREMLDGTPFEQPITIVEDLLEIVE
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mRNA from alignment at M-pyrifera_M_contig102196:410..661-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102196.467.1 ID=mRNA_M-pyrifera_M_contig102196.467.1|Name=mRNA_M-pyrifera_M_contig102196.467.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig102196:410..661- (Macrocystis pyrifera P11B4 male)
CACAAGGTGCGGGGCATCTCGACGATCCTCGAATCGGCACCCAACGCCGC GGTCGTACTCATCGGTGACACGTCGCAACAAGACGCGACGGCATTCTCGA CGGTGATCGGTGAACACCCCGAACGGTCCATCGCCGCCTACCTCCGAGAT GTCGGGGTTCCGGAGAAGGCCGACCTCGTGCGGGAGATGCTCGACGGAAC ACCGTTCGAGCAACCGATCACGATCGTCGAAGACCTTCTCGAGATCGTCG AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102196:410..661-

>mRNA_M-pyrifera_M_contig102196.467.1 ID=mRNA_M-pyrifera_M_contig102196.467.1|Name=mRNA_M-pyrifera_M_contig102196.467.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig102196:410..661- (Macrocystis pyrifera P11B4 male)
CACAAGGTGCGGGGCATCTCGACGATCCTCGAATCGGCACCCAACGCCGC
GGTCGTACTCATCGGTGACACGTCGCAACAAGACGCGACGGCATTCTCGA
CGGTGATCGGTGAACACCCCGAACGGTCCATCGCCGCCTACCTCCGAGAT
GTCGGGGTTCCGGAGAAGGCCGACCTCGTGCGGGAGATGCTCGACGGAAC
ACCGTTCGAGCAACCGATCACGATCGTCGAAGACCTTCTCGAGATCGTCG
AACACAAGGTGCGGGGCATCTCGACGATCCTCGAATCGGCACCCAACGCC
GCGGTCGTACTCATCGGTGACACGTCGCAACAAGACGCGACGGCATTCTC
GACGGTGATCGGTGAACACCCCGAACGGTCCATCGCCGCCTACCTCCGAG
ATGTCGGGGTTCCGGAGAAGGCCGACCTCGTGCGGGAGATGCTCGACGGA
ACACCGTTCGAGCAACCGATCACGATCGTCGAAGACCTTCTCGAGATCGT
CGAA
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