mRNA_M-pyrifera_M_contig102194.466.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102194.466.1
Unique NamemRNA_M-pyrifera_M_contig102194.466.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102194.466.1 vs. uniprot
Match: A0A7S4I126_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I126_9EUKA)

HSP 1 Score: 146 bits (368), Expect = 1.010e-38
Identity = 78/189 (41.27%), Postives = 120/189 (63.49%), Query Frame = 1 
Query:    7 PLLWIHTGATVLVSVLIACAIVLTVKSIRSYASLREVAWSARLFTAKLSNFPLRITDVDRLQAYFDEGYPGQVLQCYICFDLNKLKKYYKTLRKVEDKIQHYEVLWTTVGERPFIHKNPILRVLGCNALCKPGVDALEYYHAKKERCEQKI-----RDYHHRERQQITTGVCFATFYKADECRQFIRDF 558
            P+LWI   + V +SVL+  AI  TV ++  YA+  E+  +ARLFTAK+ NFP  + D   L+ + +E YPG++LQ YIC ++N+L++ Y+ L K++ +I HYE+ ++T+G RP  + N + R + C ++ KP  DAL+ ++ KK R E+KI     RDY        +TGVCF TF K +   +FI+DF
Sbjct:    1 PMLWIIAASVVFLSVLVIGAIHRTVTAVNKYANSDEIN-TARLFTAKIENFPRGVKDEKFLEDFLEELYPGRILQVYICLNMNELQRKYRDLAKIDQQILHYELEFSTLGHRPLTYANSVQREICCPSIYKPRADALQLFYGKKNRLERKIKLLAKRDY-------PSTGVCFVTFRKPEWRTEFIKDF 181
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BLAST of mRNA_M-pyrifera_M_contig102194.466.1 vs. uniprot
Match: A0A817CHF4_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817CHF4_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 2.460e-6
Identity = 49/188 (26.06%), Postives = 92/188 (48.94%), Query Frame = 1 
Query:    4 SPLLWIHTGATVLVSVLIACAIVLTVKSIRSYASLREVAWSARLFTAKLSNFPLRITDVDRLQAYFDEGYPG-QVLQCYICFDLNKLKKYYKTLRKVEDKI-QHYEVLWTTVGERPFIHKNPILRVLGCNALCKPGVDALEYYHAKKERCEQKIRD-YHHRERQQITTGVCFATFYKADECRQFIRDF 558
            SPLLW+HT A++L  VL    I     +   Y +  ++A      T  +        D ++L  YF E YP  Q+    + +++ +L+ +YK  R++  ++ Q  + ++   G+RP ++ N   ++ G    C   +DA++YY       +Q++ D Y H  +++   G+ F TF  ++E  Q   +F
Sbjct:  181 SPLLWVHTCASILF-VLAGIIIAYLYTNATRYYATEDMASR----TLMIRGIRHSACDEEKLSQYFREAYPSFQITHLTLVYNIAQLQHFYKR-RELNLRVWQQSKQMFEESGKRPVVYNNKCGQMCGW---CAKEIDAIDYYEKLYNAYKQRVEDEYLHVRKKKC--GLAFITFSTSEETYQVRSNF 357
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102194.466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4I126_9EUKA1.010e-3841.27Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A817CHF4_9BILA2.460e-626.06Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102194contigM-pyrifera_M_contig102194:54..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score63.2
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog9818.XP_007935161.1
Preferred nameTMEM63A
KEGG koko:K21989
Hectar predicted targeting categorysignal peptide
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005815,GO:0005856,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0035579,GO:0036230,GO:0042119,GO:0042581,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0070821,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0099503
EggNOG free text desc.Transmembrane protein 63A
EggNOG OGs354CW@311790,38CBQ@33154,3BAXE@33208,3CUH0@33213,3JB1F@40674,489QZ@7711,48ZHK@7742,COG5594@1,KOG1134@2759
COG Functional cat.S
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.5457804-CDS-M-pyrifera_M_contig102194:53..6111622815522.5457804-CDS-M-pyrifera_M_contig102194:53..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102194 54..611 +
1692277448.6331067-CDS-M-pyrifera_M_contig102194:53..6111692277448.6331067-CDS-M-pyrifera_M_contig102194:53..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102194 54..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102194.466.1prot_M-pyrifera_M_contig102194.466.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102194 54..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102194.466.1

>prot_M-pyrifera_M_contig102194.466.1 ID=prot_M-pyrifera_M_contig102194.466.1|Name=mRNA_M-pyrifera_M_contig102194.466.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
GSPLLWIHTGATVLVSVLIACAIVLTVKSIRSYASLREVAWSARLFTAKL
SNFPLRITDVDRLQAYFDEGYPGQVLQCYICFDLNKLKKYYKTLRKVEDK
IQHYEVLWTTVGERPFIHKNPILRVLGCNALCKPGVDALEYYHAKKERCE
QKIRDYHHRERQQITTGVCFATFYKADECRQFIRDF
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mRNA from alignment at M-pyrifera_M_contig102194:54..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102194.466.1 ID=mRNA_M-pyrifera_M_contig102194.466.1|Name=mRNA_M-pyrifera_M_contig102194.466.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig102194:54..611+ (Macrocystis pyrifera P11B4 male)
GGGAGTCCGCTCCTGTGGATTCACACAGGCGCAACAGTCCTGGTGTCGGT
GCTGATTGCGTGTGCCATCGTCCTGACAGTCAAGTCGATTCGCTCCTATG
CCTCACTGCGCGAGGTGGCATGGAGCGCGCGCCTCTTCACGGCCAAGCTC
AGCAACTTTCCCCTGCGCATCACAGACGTGGATCGCTTGCAGGCGTACTT
TGACGAGGGCTACCCTGGCCAAGTGCTGCAGTGCTACATCTGCTTCGACC
TCAACAAGCTGAAGAAGTACTACAAGACCCTCCGCAAGGTTGAGGACAAG
ATTCAGCACTACGAAGTGCTGTGGACCACAGTCGGAGAGCGGCCTTTCAT
CCACAAGAACCCCATCCTGCGCGTGCTCGGCTGTAACGCCCTCTGCAAGC
CCGGCGTCGACGCTTTGGAGTACTACCACGCCAAGAAGGAGAGGTGCGAG
CAGAAGATCCGGGACTACCACCACCGAGAGCGACAGCAGATCACCACTGG
GGTGTGCTTCGCCACCTTCTACAAGGCCGATGAATGCCGCCAGTTCATCC
GCGACTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102194:54..611+

>mRNA_M-pyrifera_M_contig102194.466.1 ID=mRNA_M-pyrifera_M_contig102194.466.1|Name=mRNA_M-pyrifera_M_contig102194.466.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig102194:54..611+ (Macrocystis pyrifera P11B4 male)
GGGAGTCCGCTCCTGTGGATTCACACAGGCGCAACAGTCCTGGTGTCGGT
GCTGATTGCGTGTGCCATCGTCCTGACAGTCAAGTCGATTCGCTCCTATG
CCTCACTGCGCGAGGTGGCATGGAGCGCGCGCCTCTTCACGGCCAAGCTC
AGCAACTTTCCCCTGCGCATCACAGACGTGGATCGCTTGCAGGCGTACTT
TGACGAGGGCTACCCTGGCCAAGTGCTGCAGTGCTACATCTGCTTCGACC
TCAACAAGCTGAAGAAGTACTACAAGACCCTCCGCAAGGTTGAGGACAAG
ATTCAGCACTACGAAGTGCTGTGGACCACAGTCGGAGAGCGGCCTTTCAT
CCACAAGAACCCCATCCTGCGCGTGCTCGGCTGTAACGCCCTCTGCAAGC
CCGGCGTCGACGCTTTGGAGTACTACCACGCCAAGAAGGAGAGGTGCGAG
CAGAAGATCCGGGACTACCACCACCGAGAGCGACAGCAGATCACCACTGG
GGTGTGCTTCGCCACCTTCTACAAGGCCGATGAATGCCGCCAGTTCATCC
GCGACTTTGGGAGTCCGCTCCTGTGGATTCACACAGGCGCAACAGTCCTG
GTGTCGGTGCTGATTGCGTGTGCCATCGTCCTGACAGTCAAGTCGATTCG
CTCCTATGCCTCACTGCGCGAGGTGGCATGGAGCGCGCGCCTCTTCACGG
CCAAGCTCAGCAACTTTCCCCTGCGCATCACAGACGTGGATCGCTTGCAG
GCGTACTTTGACGAGGGCTACCCTGGCCAAGTGCTGCAGTGCTACATCTG
CTTCGACCTCAACAAGCTGAAGAAGTACTACAAGACCCTCCGCAAGGTTG
AGGACAAGATTCAGCACTACGAAGTGCTGTGGACCACAGTCGGAGAGCGG
CCTTTCATCCACAAGAACCCCATCCTGCGCGTGCTCGGCTGTAACGCCCT
CTGCAAGCCCGGCGTCGACGCTTTGGAGTACTACCACGCCAAGAAGGAGA
GGTGCGAGCAGAAGATCCGGGACTACCACCACCGAGAGCGACAGCAGATC
ACCACTGGGGTGTGCTTCGCCACCTTCTACAAGGCCGATGAATGCCGCCA
GTTCATCCGCGACTTT
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