mRNA_M-pyrifera_M_contig102139.463.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102139.463.1
Unique NamemRNA_M-pyrifera_M_contig102139.463.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A518A9U3_9PLAN (MMPL family protein n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518A9U3_9PLAN)

HSP 1 Score: 267 bits (682), Expect = 8.480e-83
Identity = 142/152 (93.42%), Postives = 145/152 (95.39%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPRNVDQPDGSDHKDSGAETDESRPRSPHFLKQSQQGAKDQSDKAVA 456
            QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRL+RNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRP + DQPDGSDHKDS +  DESRPRSPHFLKQSQQG KDQS KAVA
Sbjct:  591 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLTRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPESADQPDGSDHKDSDSSVDESRPRSPHFLKQSQQGTKDQSGKAVA 742          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A350KA83_9PLAN (RND transporter (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KA83_9PLAN)

HSP 1 Score: 233 bits (593), Expect = 1.710e-71
Identity = 127/152 (83.55%), Postives = 136/152 (89.47%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPRNVDQPDGSDHKDSGAETDESRPRSPHFLKQSQQGAKDQSDKAVA 456
            QIPIDIGIMMTASIALGIAVDGTFHFLVRYQ QFRL+RNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDL+LLPCLLALRP+  D  + SDH DS +++   +  +PHFLKQ Q GAKDQS KAVA
Sbjct:  386 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQSQFRLTRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLVLLPCLLALRPKKSDDHNESDHTDS-SQSSHDQQHTPHFLKQHQHGAKDQSGKAVA 536          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A517XEY4_9PLAN (MMPL family protein n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XEY4_9PLAN)

HSP 1 Score: 233 bits (594), Expect = 6.380e-70
Identity = 127/152 (83.55%), Postives = 136/152 (89.47%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPRNVDQPDGSDHKDSGAETDESRPRSPHFLKQSQQGAKDQSDKAVA 456
            QIPIDIGIMMTASIALGIAVDGTFHFLVRYQ QFRL+RNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDL+LLPCLLALRP+  D  + SDH DS +++   +  +PHFLKQ Q GAKDQS KAVA
Sbjct:  591 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQSQFRLTRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLVLLPCLLALRPKKSDDQNESDHTDS-SQSSHDQQHTPHFLKQHQHGAKDQSGKAVA 741          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A3C0AJF0_9PLAN (MMPL domain-containing protein (Fragment) n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AJF0_9PLAN)

HSP 1 Score: 219 bits (557), Expect = 6.730e-70
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPRNVDQPDGSDHKDSGAETDESRPRSPHFLKQSQQGAKDQSDKAVA 456
            QIPIDIGIMMTASIALGIAVDGTFHFLVRYQ ++RL+RNSAQASR+SLLMTGEPIFTAAVITG GMLALTLSNFVPTARFGYMMTSLLVAALVGDL+LLPCLLALRP   +  + +D  DS     + +  +PHFLKQ Q+G KDQS KAVA
Sbjct:   69 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQSKYRLTRNSAQASRNSLLMTGEPIFTAAVITGTGMLALTLSNFVPTARFGYMMTSLLVAALVGDLVLLPCLLALRPEKTEGQNAADQADSEQSAQDPQ-HAPHFLKQQQRGTKDQSGKAVA 219          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A518IG16_9PLAN (MMPL family protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IG16_9PLAN)

HSP 1 Score: 226 bits (577), Expect = 1.910e-67
Identity = 121/152 (79.61%), Postives = 133/152 (87.50%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPRNVDQPDGSDHKDSGAETDESRPRSPHFLKQSQQGAKDQSDKAVA 456
            QIPIDIGIMMTASIALGIAVDGTFHFLVRYQ Q+RL++NSAQ+SRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLL AALVGDLILLPCLLALRP+N ++ + +DH DS  +     P +PHFLKQ   G K QS+KAVA
Sbjct:  591 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQSQYRLTKNSAQSSRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLGAALVGDLILLPCLLALRPQNSEESESTDHNDSDRQQQGRHPVAPHFLKQDHLGTKGQSEKAVA 742          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A517WY87_9PLAN (MMPL family protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WY87_9PLAN)

HSP 1 Score: 219 bits (559), Expect = 7.760e-65
Identity = 118/152 (77.63%), Postives = 130/152 (85.53%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPRNVDQPDGSDHKDSGAETDESRPRSPHFLKQSQQGAKDQSDKAVA 456
            QIPIDIGIMMTASIALGIAVDGTFHFLVRYQ Q+RL++NSAQ+SRDSLLMTGEPIFTAAVITGAGM+ALTLSNFVPTARFGYMMTSLL+AALVGDLILLP LLALRP+       +D  DS    +   P +PHFLK ++QG KDQS KAVA
Sbjct:  591 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQSQYRLTKNSAQSSRDSLLMTGEPIFTAAVITGAGMMALTLSNFVPTARFGYMMTSLLIAALVGDLILLPSLLALRPQKPTDDGSTDRNDSSDLLERQHPSAPHFLKDNRQGTKDQSKKAVA 742          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A517ZNX0_9PLAN (MMPL family protein n=5 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZNX0_9PLAN)

HSP 1 Score: 140 bits (353), Expect = 8.390e-36
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    7 PIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPRNVDQ 336
            P+DIG+MM+ SIALGIAVDGTFHFLV YQ QF    +S+QAS ++L  TG PIF AA+I+  GMLALTLS+F PTARFG +M SLL+AALVGDL+LLP LL LRP  + Q
Sbjct:  594 PVDIGMMMSGSIALGIAVDGTFHFLVHYQTQFNRGVSSSQASCEALRQTGVPIFKAALISSIGMLALTLSSFAPTARFGLLMCSLLIAALVGDLVLLPALLCLRPSRLRQ 703          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A3B1DV84_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DV84_9ZZZZ)

HSP 1 Score: 140 bits (352), Expect = 1.190e-35
Identity = 71/108 (65.74%), Postives = 90/108 (83.33%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPR 324
            QIP+DIG+MMT SIALGIAVDGTFHFLVR+ EQ+  + +S++++R +L  TG PIF AA+I G GMLAL+LS+F PT+RFG MMT+LL AALVGDL+LLP +L+  PR
Sbjct:  595 QIPVDIGMMMTGSIALGIAVDGTFHFLVRFNEQYTETGDSSESARSALAQTGAPIFEAALIGGIGMLALSLSSFAPTSRFGLMMTALLTAALVGDLVLLPAVLSFLPR 702          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A356A7I9_9PLAN (SSD domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356A7I9_9PLAN)

HSP 1 Score: 129 bits (325), Expect = 1.560e-35
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPR 324
            ++PIDIG+MM+ SIALGIAVDGTFHFL+RY+ + R   +SA AS  +L  TG  I  AA+I   GMLAL+LS F PTARFG +MT+LLVAAL+GDL+LLP +LALR R
Sbjct:   16 EVPIDIGMMMSGSIALGIAVDGTFHFLLRYESELRREGDSAVASALALDHTGPAIAEAAIIAAVGMLALSLSQFAPTARFGMLMTALLVAALIGDLVLLPAMLALRSR 123          
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Match: A0A5C5XJC1_9PLAN (MMPL family protein n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5XJC1_9PLAN)

HSP 1 Score: 130 bits (327), Expect = 2.960e-32
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 QIPIDIGIMMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTAAVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPR 324
            ++PIDIG+MM+ SIALGIAVDGTFHFL+RY+ + R   +SA AS  SL  TG  I  AA+I   GMLAL+LS F PTARFG +MT+LL+AAL+GDL+LLP +LALR R
Sbjct:  593 EVPIDIGMMMSGSIALGIAVDGTFHFLLRYESELRKEGDSAVASALSLDHTGPAIAEAAIIAAVGMLALSLSQFAPTARFGMLMTALLIAALIGDLVLLPAMLALRSR 700          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102139.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A9U3_9PLAN8.480e-8393.42MMPL family protein n=9 Tax=Gimesia TaxID=1649453 ... [more]
A0A350KA83_9PLAN1.710e-7183.55RND transporter (Fragment) n=1 Tax=Planctomycetace... [more]
A0A517XEY4_9PLAN6.380e-7083.55MMPL family protein n=10 Tax=Planctomycetaceae Tax... [more]
A0A3C0AJF0_9PLAN6.730e-7078.29MMPL domain-containing protein (Fragment) n=2 Tax=... [more]
A0A518IG16_9PLAN1.910e-6779.61MMPL family protein n=2 Tax=Gimesia TaxID=1649453 ... [more]
A0A517WY87_9PLAN7.760e-6577.63MMPL family protein n=2 Tax=Gimesia aquarii TaxID=... [more]
A0A517ZNX0_9PLAN8.390e-3667.27MMPL family protein n=5 Tax=Symmachiella TaxID=279... [more]
A0A3B1DV84_9ZZZZ1.190e-3565.74Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A356A7I9_9PLAN1.560e-3563.89SSD domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A5C5XJC1_9PLAN2.960e-3263.89MMPL family protein n=1 Tax=Rubinisphaera italica ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102139contigM-pyrifera_M_contig102139:205..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score222.2
Seed ortholog evalue1.5e-55
Seed eggNOG ortholog344747.PM8797T_24071
KEGG koko:K07003
Hectar predicted targeting categoryother localisation
EggNOG free text desc.growth of symbiont in host cell
EggNOG OGsCOG1033@1,COG1033@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size459
Cds size435
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.4216053-CDS-M-pyrifera_M_contig102139:204..6391622815522.4216053-CDS-M-pyrifera_M_contig102139:204..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102139 205..639 -
1692277448.5922089-CDS-M-pyrifera_M_contig102139:204..6391692277448.5922089-CDS-M-pyrifera_M_contig102139:204..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102139 205..639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.4322953-UTR-M-pyrifera_M_contig102139:639..6631622815522.4322953-UTR-M-pyrifera_M_contig102139:639..663Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102139 640..663 -
1692277448.6047568-UTR-M-pyrifera_M_contig102139:639..6631692277448.6047568-UTR-M-pyrifera_M_contig102139:639..663Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102139 640..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102139.463.1prot_M-pyrifera_M_contig102139.463.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102139 205..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102139.463.1

>prot_M-pyrifera_M_contig102139.463.1 ID=prot_M-pyrifera_M_contig102139.463.1|Name=mRNA_M-pyrifera_M_contig102139.463.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MMTASIALGIAVDGTFHFLVRYQEQFRLSRNSAQASRDSLLMTGEPIFTA
AVITGAGMLALTLSNFVPTARFGYMMTSLLVAALVGDLILLPCLLALRPR
NVDQPDGSDHKDSGAETDESRPRSPHFLKQSQQGAKDQSDKAVA*
back to top

mRNA from alignment at M-pyrifera_M_contig102139:205..663-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102139.463.1 ID=mRNA_M-pyrifera_M_contig102139.463.1|Name=mRNA_M-pyrifera_M_contig102139.463.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig102139:205..663- (Macrocystis pyrifera P11B4 male)
CAGATTCCGATCGACATCGGGATCATGATGACTGCCAGTATTGCGCTGGG TATCGCCGTCGACGGGACGTTCCACTTCCTGGTGCGATACCAGGAGCAGT TCCGTCTTTCCCGTAATTCGGCACAGGCTTCCCGCGATTCCCTGCTGATG ACCGGTGAACCGATCTTTACGGCTGCGGTGATTACCGGGGCCGGTATGCT GGCGTTAACGCTCAGCAACTTCGTGCCGACCGCGCGGTTTGGCTATATGA TGACTTCACTGCTGGTGGCAGCTCTGGTGGGAGATTTGATCCTGTTGCCC TGTCTGCTGGCCCTGCGACCACGGAATGTCGATCAGCCGGATGGATCTGA TCACAAAGACAGTGGTGCCGAGACGGATGAGTCCCGGCCACGGAGTCCGC ATTTTCTCAAGCAGTCGCAACAGGGAGCGAAAGATCAGTCAGACAAAGCA GTTGCATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102139:205..663-

>mRNA_M-pyrifera_M_contig102139.463.1 ID=mRNA_M-pyrifera_M_contig102139.463.1|Name=mRNA_M-pyrifera_M_contig102139.463.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig102139:205..663- (Macrocystis pyrifera P11B4 male)
ATGATGACTGCCAGTATTGCGCTGGGTATCGCCGTCGACGGGACGTTCCA
CTTCCTGGTGCGATACCAGGAGCAGTTCCGTCTTTCCCGTAATTCGGCAC
AGGCTTCCCGCGATTCCCTGCTGATGACCGGTGAACCGATCTTTACGGCT
GCGGTGATTACCGGGGCCGGTATGCTGGCGTTAACGCTCAGCAACTTCGT
GCCGACCGCGCGGTTTGGCTATATGATGACTTCACTGCTGGTGGCAGCTC
TGGTGGGAGATTTGATCCTGTTGCCCTGTCTGCTGGCCCTGCGACCACGG
AATGTCGATCAGCCGGATGGATCTGATCACAAAGACAGTGGTGCCGAGAC
GGATGAGTCCCGGCCACGGAGTCCGCATTTTCTCAAGCAGTCGCAACAGG
GAGCGAAAGATCAGTCAGACAAAGCAGTTGCATAGATGATGACTGCCAGT
ATTGCGCTGGGTATCGCCGTCGACGGGACGTTCCACTTCCTGGTGCGATA
CCAGGAGCAGTTCCGTCTTTCCCGTAATTCGGCACAGGCTTCCCGCGATT
CCCTGCTGATGACCGGTGAACCGATCTTTACGGCTGCGGTGATTACCGGG
GCCGGTATGCTGGCGTTAACGCTCAGCAACTTCGTGCCGACCGCGCGGTT
TGGCTATATGATGACTTCACTGCTGGTGGCAGCTCTGGTGGGAGATTTGA
TCCTGTTGCCCTGTCTGCTGGCCCTGCGACCACGGAATGTCGATCAGCCG
GATGGATCTGATCACAAAGACAGTGGTGCCGAGACGGATGAGTCCCGGCC
ACGGAGTCCGCATTTTCTCAAGCAGTCGCAACAGGGAGCGAAAGATCAGT
CAGACAAAGCAGTTGCATAG
back to top