mRNA_M-pyrifera_M_contig102133.462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102133.462.1
Unique NamemRNA_M-pyrifera_M_contig102133.462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A517PU42_9PLAN (Large cysteine-rich periplasmic protein OmcB n=4 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PU42_9PLAN)

HSP 1 Score: 274 bits (701), Expect = 4.910e-88
Identity = 147/156 (94.23%), Postives = 147/156 (94.23%), Query Frame = 1
Query:    1 MPGIVNRPILRMTSGMLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MPGIVNRPILRMTSGMLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQP DLPEEIPSRPRVETPQPQMRSK        SGPMMTPPAQVGPLEMTVD
Sbjct:    1 MPGIVNRPILRMTSGMLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPCDLPEEIPSRPRVETPQPQMRSKPETTPQRPSGPMMTPPAQVGPLEMTVD 156          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A2E7K5T2_9PLAN (DUF11 domain-containing protein n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K5T2_9PLAN)

HSP 1 Score: 249 bits (636), Expect = 1.920e-78
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 1
Query:   46 MLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSK XXXXXXXSGPMMTPPAQVGPLEMTVD
Sbjct:    1 MLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKPXXXXXXXSGPMMTPPAQVGPLEMTVD 141          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A517VSZ0_9PLAN (Large cysteine-rich periplasmic protein OmcB n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VSZ0_9PLAN)

HSP 1 Score: 123 bits (309), Expect = 3.340e-30
Identity = 86/159 (54.09%), Postives = 112/159 (70.44%), Query Frame = 1
Query:    1 MPGIVNRPILRMTSGMLLV--LTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRS-KXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MPG   RP  +  +GMLL+  LT++++AC++ AP QR+SWKL++PPPLDPQN+ L +P    P  QSRETQR+ P+ TI QKQ   + P  D+FAVPES++RN PPQPRDLPE I  RP ++ P    +S + XXXXXXX    MT PA  GPLE++VD
Sbjct:    1 MPGSQIRPFSKFAAGMLLLSMLTVAVSACSSLAPGQRSSWKLSNPPPLDPQNESLENPS-QNPTPQSRETQRVNPE-TIRQKQPQNSQPQKDLFAVPESVNRNLPPQPRDLPERISPRPELKRPDYLKKSPQSXXXXXXXXXXXMTAPATTGPLELSVD 157          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A350K5V3_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K5V3_9PLAN)

HSP 1 Score: 115 bits (287), Expect = 3.330e-29
Identity = 80/169 (47.34%), Postives = 93/169 (55.03%), Query Frame = 1
Query:    1 MPGIVNRPILRMTSGMLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGP-------------QQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MPG   RP   + S +LL+LTLS  AC+A APSQR+SWKLTDPPPLDPQNQ                                   Q T PQ +E       D+FAVPES+ +NQPPQPRDLPE++  RP++  P  Q RSK        SGPMMT PA  GPLEMT D
Sbjct:    1 MPGSRIRPSSGVISFLLLLLTLSTAACSALAPSQRSSWKLTDPPPLDPQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPTSPQPKE-------DLFAVPESLKQNQPPQPRDLPEQVMPRPQLNAPDIQSRSKPEPLSKQPSGPMMTAPATAGPLEMTAD 162          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A517VIW8_9PLAN (Large cysteine-rich periplasmic protein OmcB n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517VIW8_9PLAN)

HSP 1 Score: 119 bits (299), Expect = 8.420e-29
Identity = 81/156 (51.92%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    1 MPGIVNRPILRMTSGMLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MPG   RP+    S +LL+LTLS  AC+A APSQR+SWKLTDPPPLDPQNQPLNSP         RETQR+ PQ TIPQ+Q                       QPRDLP+++  RP++  P  Q RSK        SGPMMT PA  GPLEMTVD
Sbjct:    1 MPGSRIRPLSGAVSILLLLLTLSTAACSALAPSQRSSWKLTDPPPLDPQNQPLNSPVXXX-XXXXRETQRVNPQ-TIPQRQPTAXXXXXXXXXXXXXXXXXXXXQPRDLPDQVMPRPQLRAPDIQSRSKPESLPKQPSGPMMTAPATAGPLEMTVD 154          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A2D5GTV7_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GTV7_9PLAN)

HSP 1 Score: 108 bits (270), Expect = 2.380e-27
Identity = 72/150 (48.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   58 LTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGP-------------QQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            +TLS  AC+A APSQR+SWKLTDPPPLDPQNQ                                   Q T PQ       P+ D+FAVPES+ +NQPPQPRDLPE++  RP++  P  Q RSK        SGPMMT PA  GPLEMTVD
Sbjct:    1 MTLSTAACSALAPSQRSSWKLTDPPPLDPQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPTSPQ-------PNEDLFAVPESLKQNQPPQPRDLPEQVMPRPQLNAPDIQSRSKPEPLSKQPSGPMMTAPATAGPLEMTVD 143          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A517RKK1_9PLAN (Large cysteine-rich periplasmic protein OmcB n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517RKK1_9PLAN)

HSP 1 Score: 110 bits (276), Expect = 1.450e-25
Identity = 75/157 (47.77%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 MPGIVNRPILRMTSGMLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSP-QPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MPG   RP  R  S MLL+LTL++TAC+A AP  R+SWKLTDPPPL+PQNQ L  P +   P ++ RETQRI P+ TIPQ+                       PQP+DLPEEI  +PR+  P  Q R +        SGPMMT P+  GPLEM+V+
Sbjct:    1 MPGSGIRPFSRSVSVMLLLLTLAVTACSALAPGSRSSWKLTDPPPLNPQNQSLQKPTETQPPQSKPRETQRIAPE-TIPQRXXXXXXXXXXXXXXXXXXXXXXXPQPQDLPEEIKPQPRLNVPDLQSRMQPKSAPKRQSGPMMTAPSASGPLEMSVE 156          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A3C0AEI8_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AEI8_9PLAN)

HSP 1 Score: 93.2 bits (230), Expect = 9.000e-20
Identity = 67/158 (42.41%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   46 MLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGP-----------------QQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MLL+LTLS  AC+  APSQR+SWKLTDPP LDPQNQ                                       Q  +PQ +E       D+FAVPES+++NQPPQ R+LP++  +RP++  P  Q RS+        +GP MT PA  GPLEMTVD
Sbjct:    1 MLLLLTLSTAACSTLAPSQRSSWKLTDPPTLDPQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPGVPQPRE-------DLFAVPESLNQNQPPQLRNLPDQDMTRPQLNAPDLQSRSQPDTIIQQPTGPRMTAPATAGPLEMTVD 151          
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Match: A0A2E2C461_9PLAN (DUF11 domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C461_9PLAN)

HSP 1 Score: 93.2 bits (230), Expect = 3.190e-19
Identity = 67/158 (42.41%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   46 MLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQNQPLNSPQPATPNTQSRETQRIGP-----------------QQTIPQKQEPPAPPDNDMFAVPESIDRNQPPQPRDLPEEIPSRPRVETPQPQMRSKXXXXXXXXSGPMMTPPAQVGPLEMTVD 468
            MLL+LTLS  AC+  APSQR+SWKLTDPP LDPQNQ                                       Q  +PQ +E       D+FAVPES+++NQPPQ R+LP++  +RP++  P  Q RS+        +GP MT PA  GPLEMTVD
Sbjct:    1 MLLLLTLSTAACSTLAPSQRSSWKLTDPPTLDPQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPGVPQPRE-------DLFAVPESLNQNQPPQLRNLPDQDMTRPQLNAPDLQSRSQPDTIIQQPTGPRMTAPATAGPLEMTVD 151          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102133.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A517PU42_9PLAN4.910e-8894.23Large cysteine-rich periplasmic protein OmcB n=4 T... [more]
A0A2E7K5T2_9PLAN1.920e-7899.29DUF11 domain-containing protein n=9 Tax=Gimesia Ta... [more]
A0A517VSZ0_9PLAN3.340e-3054.09Large cysteine-rich periplasmic protein OmcB n=2 T... [more]
A0A350K5V3_9PLAN3.330e-2947.34Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517VIW8_9PLAN8.420e-2951.92Large cysteine-rich periplasmic protein OmcB n=5 T... [more]
A0A2D5GTV7_9PLAN2.380e-2748.00Uncharacterized protein (Fragment) n=2 Tax=Gimesia... [more]
A0A517RKK1_9PLAN1.450e-2547.77Large cysteine-rich periplasmic protein OmcB n=4 T... [more]
A0A3C0AEI8_9PLAN9.000e-2042.41Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A2E2C461_9PLAN3.190e-1942.41DUF11 domain-containing protein n=4 Tax=Planctomyc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102133contigM-pyrifera_M_contig102133:2..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.0
Seed ortholog evalue2e-24
Seed eggNOG ortholog344747.PM8797T_20798
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Conserved repeat domain
EggNOG OGs2IZ0N@203682,COG1361@1,COG1361@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size468
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.378003-CDS-M-pyrifera_M_contig102133:1..4691622815522.378003-CDS-M-pyrifera_M_contig102133:1..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102133 2..469 -
1692277448.5772498-CDS-M-pyrifera_M_contig102133:1..4691692277448.5772498-CDS-M-pyrifera_M_contig102133:1..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102133 2..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102133.462.1prot_M-pyrifera_M_contig102133.462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102133 2..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102133.462.1

>prot_M-pyrifera_M_contig102133.462.1 ID=prot_M-pyrifera_M_contig102133.462.1|Name=mRNA_M-pyrifera_M_contig102133.462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
MPGIVNRPILRMTSGMLLVLTLSLTACTAFAPSQRASWKLTDPPPLDPQN
QPLNSPQPATPNTQSRETQRIGPQQTIPQKQEPPAPPDNDMFAVPESIDR
NQPPQPRDLPEEIPSRPRVETPQPQMRSKPETTPQRPSGPMMTPPAQVGP
LEMTVD
back to top

mRNA from alignment at M-pyrifera_M_contig102133:2..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102133.462.1 ID=mRNA_M-pyrifera_M_contig102133.462.1|Name=mRNA_M-pyrifera_M_contig102133.462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig102133:2..469- (Macrocystis pyrifera P11B4 male)
ATGCCGGGCATTGTGAATCGGCCAATTTTGAGAATGACTTCAGGAATGCT GCTGGTGCTGACACTGTCACTGACAGCCTGCACCGCCTTTGCGCCCAGTC AGCGTGCGTCCTGGAAGCTGACCGATCCACCACCGCTGGATCCTCAAAAT CAGCCACTCAACAGTCCCCAGCCCGCAACACCCAATACCCAGTCACGAGA AACGCAACGCATCGGTCCGCAGCAGACGATTCCCCAGAAACAGGAACCGC CTGCACCACCCGACAACGATATGTTTGCAGTCCCCGAATCGATTGACCGC AATCAGCCGCCACAACCTCGTGATCTGCCTGAAGAAATACCGTCCCGTCC GCGGGTGGAGACGCCTCAGCCCCAGATGCGTTCTAAACCCGAAACGACTC CCCAGCGTCCCTCCGGACCGATGATGACTCCGCCGGCACAGGTGGGGCCG TTGGAAATGACGGTTGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102133:2..469-

>mRNA_M-pyrifera_M_contig102133.462.1 ID=mRNA_M-pyrifera_M_contig102133.462.1|Name=mRNA_M-pyrifera_M_contig102133.462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig102133:2..469- (Macrocystis pyrifera P11B4 male)
ATGCCGGGCATTGTGAATCGGCCAATTTTGAGAATGACTTCAGGAATGCT
GCTGGTGCTGACACTGTCACTGACAGCCTGCACCGCCTTTGCGCCCAGTC
AGCGTGCGTCCTGGAAGCTGACCGATCCACCACCGCTGGATCCTCAAAAT
CAGCCACTCAACAGTCCCCAGCCCGCAACACCCAATACCCAGTCACGAGA
AACGCAACGCATCGGTCCGCAGCAGACGATTCCCCAGAAACAGGAACCGC
CTGCACCACCCGACAACGATATGTTTGCAGTCCCCGAATCGATTGACCGC
AATCAGCCGCCACAACCTCGTGATCTGCCTGAAGAAATACCGTCCCGTCC
GCGGGTGGAGACGCCTCAGCCCCAGATGCGTTCTAAACCCGAAACGACTC
CCCAGCGTCCCTCCGGACCGATGATGACTCCGCCGGCACAGGTGGGGCCG
TTGGAAATGACGGTTGATATGCCGGGCATTGTGAATCGGCCAATTTTGAG
AATGACTTCAGGAATGCTGCTGGTGCTGACACTGTCACTGACAGCCTGCA
CCGCCTTTGCGCCCAGTCAGCGTGCGTCCTGGAAGCTGACCGATCCACCA
CCGCTGGATCCTCAAAATCAGCCACTCAACAGTCCCCAGCCCGCAACACC
CAATACCCAGTCACGAGAAACGCAACGCATCGGTCCGCAGCAGACGATTC
CCCAGAAACAGGAACCGCCTGCACCACCCGACAACGATATGTTTGCAGTC
CCCGAATCGATTGACCGCAATCAGCCGCCACAACCTCGTGATCTGCCTGA
AGAAATACCGTCCCGTCCGCGGGTGGAGACGCCTCAGCCCCAGATGCGTT
CTAAACCCGAAACGACTCCCCAGCGTCCCTCCGGACCGATGATGACTCCG
CCGGCACAGGTGGGGCCGTTGGAAATGACGGTTGAT
back to top