mRNA_M-pyrifera_M_contig102131.461.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102131.461.1
Unique NamemRNA_M-pyrifera_M_contig102131.461.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102131.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102131contigM-pyrifera_M_contig102131:171..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size384
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.3259578-CDS-M-pyrifera_M_contig102131:170..5271622815522.3259578-CDS-M-pyrifera_M_contig102131:170..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102131 171..527 -
1692277448.5514219-CDS-M-pyrifera_M_contig102131:170..5271692277448.5514219-CDS-M-pyrifera_M_contig102131:170..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102131 171..527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.3364813-UTR-M-pyrifera_M_contig102131:527..5541622815522.3364813-UTR-M-pyrifera_M_contig102131:527..554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102131 528..554 -
1692277448.5619433-UTR-M-pyrifera_M_contig102131:527..5541692277448.5619433-UTR-M-pyrifera_M_contig102131:527..554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102131 528..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102131.461.1prot_M-pyrifera_M_contig102131.461.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102131 171..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102131.461.1

>prot_M-pyrifera_M_contig102131.461.1 ID=prot_M-pyrifera_M_contig102131.461.1|Name=mRNA_M-pyrifera_M_contig102131.461.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MFWDVGVLAYSTHGCHVQNVSEAGVWCACDHLTDFRGRFESLATENRAIL
EQADAPVTKKQFHQNPGVFIIMGALIFITFVLFFFVSVADSVQHRRFATA
LLQDSEVQFVRQLTELEGR
back to top

mRNA from alignment at M-pyrifera_M_contig102131:171..554-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102131.461.1 ID=mRNA_M-pyrifera_M_contig102131.461.1|Name=mRNA_M-pyrifera_M_contig102131.461.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig102131:171..554- (Macrocystis pyrifera P11B4 male)
ACAGGAGAGGTATCGACTGCGAGCTGCATGTTTTGGGACGTAGGGGTACT
TGCATACAGTACGCATGGCTGCCACGTGCAAAACGTGAGTGAAGCGGGCG
TTTGGTGCGCATGTGATCACTTAACAGACTTCCGCGGTCGCTTCGAGTCA
TTGGCAACGGAAAACCGGGCAATCCTTGAGCAAGCTGATGCACCAGTAAC
AAAGAAGCAGTTTCACCAAAACCCAGGAGTTTTTATTATCATGGGTGCAT
TGATCTTTATCACCTTTGTCTTGTTCTTTTTTGTGTCGGTCGCTGACAGT
GTGCAACACCGCCGCTTTGCAACTGCACTTTTGCAAGACTCTGAAGTGCA
GTTCGTGCGACAACTCACCGAATTGGAAGGCCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102131:171..554-

>mRNA_M-pyrifera_M_contig102131.461.1 ID=mRNA_M-pyrifera_M_contig102131.461.1|Name=mRNA_M-pyrifera_M_contig102131.461.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig102131:171..554- (Macrocystis pyrifera P11B4 male)
ATGTTTTGGGACGTAGGGGTACTTGCATACAGTACGCATGGCTGCCACGT
GCAAAACGTGAGTGAAGCGGGCGTTTGGTGCGCATGTGATCACTTAACAG
ACTTCCGCGGTCGCTTCGAGTCATTGGCAACGGAAAACCGGGCAATCCTT
GAGCAAGCTGATGCACCAGTAACAAAGAAGCAGTTTCACCAAAACCCAGG
AGTTTTTATTATCATGGGTGCATTGATCTTTATCACCTTTGTCTTGTTCT
TTTTTGTGTCGGTCGCTGACAGTGTGCAACACCGCCGCTTTGCAACTGCA
CTTTTGCAAGACTCTGAAGTGCAGTTCGTGCGACAACTCACCGAATTGGA
AGGCCGCATGTTTTGGGACGTAGGGGTACTTGCATACAGTACGCATGGCT
GCCACGTGCAAAACGTGAGTGAAGCGGGCGTTTGGTGCGCATGTGATCAC
TTAACAGACTTCCGCGGTCGCTTCGAGTCATTGGCAACGGAAAACCGGGC
AATCCTTGAGCAAGCTGATGCACCAGTAACAAAGAAGCAGTTTCACCAAA
ACCCAGGAGTTTTTATTATCATGGGTGCATTGATCTTTATCACCTTTGTC
TTGTTCTTTTTTGTGTCGGTCGCTGACAGTGTGCAACACCGCCGCTTTGC
AACTGCACTTTTGCAAGACTCTGAAGTGCAGTTCGTGCGACAACTCACCG
AATTGGAAGGCCGC
back to top