mRNA_M-pyrifera_M_contig102126.458.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102126.458.1
Unique NamemRNA_M-pyrifera_M_contig102126.458.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A0G0QPG1_9BACT (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Candidatus Uhrbacteria bacterium GW2011_GWF2_39_13 TaxID=1618995 RepID=A0A0G0QPG1_9BACT)

HSP 1 Score: 154 bits (390), Expect = 1.300e-39
Identity = 86/223 (38.57%), Postives = 118/223 (52.91%), Query Frame = 1
Query:    1 VYRFLNDQ-GVRWFMPGSVGTVIPRSLNITYDGK-SIEDWPHFGYRRLSGFSFNEDSEAAIWYRRVGFGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKNHIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEKKYSPGWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            VY FL    G RW+MPG +G V+P    +    K +I   P F YR L    F +D ++ +WYRR GFG+   VN+NHSF    +++ DTNPEYFA ++GK    I    R   L  + P V +  +++   YF+ + E  +FP++PND  V           ID EK  + G  SN +W FVN VA   ++  P K IG  AY    + P  +E  SPNVVV
Sbjct:  177 VYNFLEKFCGARWYMPGELGEVLPNRKTLEIPEKIAISKTPDFEYRFLYNCDFCDDDDSVLWYRRAGFGAPFPVNINHSFYILCRKYKDTNPEYFALVDGKRDFSISCGGRGN-LCLSNPDVLKAFVKEAREYFDTNPEQYIFPVMPNDGLVKICECPECQKQIDKEKG-NTGKFSNYIWNFVNKVAKEVYKSHPDKFIGCCAYRGYLDIPDKLEKLSPNVVV 397          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A7X7MJY8_9BACT (DUF4838 domain-containing protein n=1 Tax=Oligosphaeraceae bacterium TaxID=2699751 RepID=A0A7X7MJY8_9BACT)

HSP 1 Score: 150 bits (378), Expect = 5.180e-38
Identity = 78/225 (34.67%), Postives = 123/225 (54.67%), Query Frame = 1
Query:    1 VYRFLNDQ-GVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLSGFSFNEDSEAAIWYRRVGFGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKNHIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEKKYS---PGWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            VY FL    G+RWFMPG++G V+P   +I+    S+   P F YR +    F  D + A W+RR GFG    +++NHSF+    ++ +TNPE+FA   G+   ++     R  L  +EPG+ +  +RD+  +F+   +  ++P++PND +          +F+  +++ S   P  +SN VW FVN +AL  ++  P +LIG  AYS     P  +E  SPNV V
Sbjct:   52 VYYFLEQHCGMRWFMPGALGEVVPVQRSISVPQISVTREPDFEYRNMYFNDFPTDHDGARWFRRAGFGGPA-ISINHSFSRIKSKYRETNPEFFAIYQGERDYELTC-MGRGNLCLSEPGLIQAWVRDIREFFDQQPQQLIYPVMPNDGYRTSCECERCAAFVQAQEERSGSRPQAISNYVWNFVNQIALEVYKTHPDRLIGCCAYSQYINPPDNLEKLSPNVAV 274          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A7X8YYH3_9BACT (DUF4838 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X8YYH3_9BACT)

HSP 1 Score: 133 bits (335), Expect = 2.780e-32
Identity = 80/242 (33.06%), Postives = 118/242 (48.76%), Query Frame = 1
Query:    1 VYRFLNDQGVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLS--GFSFNEDSEAAIWYRRVGFGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKNHIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFEN------HSEAK-------------LFPIVPNDSHVLHDTSAATMSFIDPEKKYSPGWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            VY  L   GVRW+ PG  GT+ P    + Y G  ++  P F YR LS   + F  D EAA++++R GFG++ Y++LNH FTNW +RF D  PE F    GK+ +DI      + +N++ P V EQ + D   +F         S  K              F  VPND   + D   AT   +    +   G +S  +W F N  A    ++FP   + +LAY Y++  P + +   PN++V
Sbjct:  153 VYWLLRQMGVRWYAPGPDGTIFPNRSTLDYTGGDVDIAPKFPYRELSEGAWFFGRDPEAALFFKRCGFGAQAYLDLNHGFTNWTERFADR-PELFETRGGKSLLDIGHKASHMSINFSNPAVLEQWLADARQWFTQPMSKYWRSAPKGIPDESRRYEFFGAFSAVPNDG--MGDVEQATKQGLLQPARGPDGEMSEYIWGFTNKAAAALKKEFPRAKVINLAY-YKYRLPPSGD-IEPNIIV 389          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A7X9AYJ8_9BACT (DUF4838 domain-containing protein n=1 Tax=Oligosphaeraceae bacterium TaxID=2699751 RepID=A0A7X9AYJ8_9BACT)

HSP 1 Score: 120 bits (301), Expect = 9.510e-28
Identity = 77/238 (32.35%), Postives = 124/238 (52.10%), Query Frame = 1
Query:    1 VYRFLND-QGVRWFMPGSVGTVIPRSLNITYDGK-SIEDWPHFGYRRLSGFSFNEDSEAA--IWYRRVGFGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKNHIDIVPDERRVVLN-----YTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEK---KYS-----PGWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            VYRFL D  GVRW+MPG +G ++P++ N++  G   ++ +P   YR     +F+E+      IWYRRVGFG    V + H++  + ++  D++PEYFA ING+   D    +  V++       +  G+ ++ ++ ++ YF+ +    +FP+ PND  V            + EK   +YS      G +SN VW F   VA    +  P K IG+ AY+ ++  P  IE F  N+ V
Sbjct:  123 VYRFLEDFVGVRWYMPGELGRILPKNKNLSIAGNIRLDVYPQNTYRYAWFCNFSEEKSRQDHIWYRRVGFGGIYPVAIMHNYV-FMRKHRDSHPEYFALINGQRDFD----KLSVIMGGGNFCLSNEGLMQEWVKTINAYFDKNPHLGMFPLCPNDGVV---------KICECEKCWDQYSRHLGEDGDMSNYVWNFTARVAREVAKTHPDKFIGTFAYA-RYRQPPDIEDFPQNIAV 345          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A7X7NBM3_9BACT (DUF4838 domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7NBM3_9BACT)

HSP 1 Score: 119 bits (298), Expect = 2.450e-27
Identity = 83/234 (35.47%), Postives = 121/234 (51.71%), Query Frame = 1
Query:    1 VYRFL-NDQGVRWFMPGSVGTVIPR--SLNITYDGKSIEDWPHFGYRRLSGFSFNEDSEAAIWYRRVGFGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKNHIDIVPDERRVVL---NY--TEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEKKYSP-----GWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            VYRFL N  G+RW+M G +G V+P+  SL +     ++E  P F YR     +F      AIWY+RVGFG++  V +NH+F    + F DT P++FA I+GK   D     R V+    NY  +   + ++ ++ +   F+ +   KL+P+ P D  V       T      +K+ SP     G  SN VW F+N VA +  +K+P   IGS AY   +  P  I+ FS NV V
Sbjct:  154 VYRFLENVAGIRWYMTGDLGRVVPKRDSLLVPVQKTTVE--PDFEYRFAWFCNFPTALRDAIWYKRVGFGAQYPVPINHNFVEM-QYFKDTRPDFFAIIDGKPDFD----NRSVICGGGNYCLSNEDLVDEWVKRISKAFDANPGIKLYPLCPGDGIVK------TCECEKCQKQLSPHLGEDGSTSNYVWGFINKVAKKIAEKYPDHYIGSFAYE-NYRQPPEIDDFSNNVAV 373          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A2M7KFV8_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20 TaxID=1973912 RepID=A0A2M7KFV8_9BACT)

HSP 1 Score: 112 bits (279), Expect = 8.890e-25
Identity = 66/223 (29.60%), Postives = 108/223 (48.43%), Query Frame = 1
Query:    7 RFLNDQGVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLSGFSFNEDSEAAIWYRRVGFGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKNHID----IVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEKKYSPGWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            RFL   GVRWFMPG +GTV+P+  ++      +   P F YR     +F+   + A+W+R VGFG    V    SF  + K + D +P++FA ++G+        +V      + N     + +Q+  D+  YF+ H + + FP+ PND              + P++  + G  S+  W FVN +A    +  PG+ +G++AY    + P  +    PNV V
Sbjct:  159 RFL---GVRWFMPGDLGTVVPKHADLFIPPLDLTRAPDFEYRYPWFCNFDIAPDDALWFRHVGFGGVAPVQAIDSFRMFLK-YKDDHPDWFALVDGERDFASLCCVVGGGNLCLSN---EALLQQMAADIGAYFDEHPDQRFFPVAPNDGMTRVCGCERCAPQVQPDRGEA-GCFSDYFWGFVNRLAAEVARTHPGRFLGTIAYEGYRDPPDNLTRLHPNVAV 373          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A7X8ZJ32_9BACT (DUF4838 domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X8ZJ32_9BACT)

HSP 1 Score: 109 bits (273), Expect = 5.600e-24
Identity = 81/230 (35.22%), Postives = 111/230 (48.26%), Query Frame = 1
Query:    4 YRFLNDQ-GVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLSGFSFNEDSEAAI-----WYRRVGFGS-KGYVNLNHSFTNWAKRFGDTNPEYFA-KINGKNHIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSF-IDPEKKYSPGWL-SNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            Y FL    GVRW+ PG+ GTV+P + +I          P +  R    +S   D E +      WYRR   GS  G    NHSF  W K+FG T+PEYFA +++G+   D V      + N   P V ++ IR+   YFE + +A    ++P DS  L+          + PE+   PG + SNLVW FVN VAL   +K P + I   AY    + P      +PNV V
Sbjct:  315 YEFLERIFGVRWYWPGNYGTVVPPATDIKITRLLQTGTPSYSTRGFL-YSIPRDKEISTEDFIRWYRRNRIGSANGSSMANHSFNAWPKKFGATHPEYFALQVDGRRKTDEVAGGHVCLSN---PEVLKETIREKLEYFEKNPDAGFSSVMPGDSFGLYKCICEDCQKPLQPER--GPGGIASNLVWDFVNKVALGVAEKMPDRYITCCAYGEYRQRPDF--PLAPNVAV 536          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A7X7MKA4_9BACT (DUF4838 domain-containing protein (Fragment) n=1 Tax=Oligosphaeraceae bacterium TaxID=2699751 RepID=A0A7X7MKA4_9BACT)

HSP 1 Score: 106 bits (264), Expect = 8.620e-23
Identity = 74/217 (34.10%), Postives = 101/217 (46.54%), Query Frame = 1
Query:    1 VYRFLNDQ-GVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLSGFSFNEDSEAAI-----WYRRVGFGSK-GYVNLNHSFTNWAKRFGDTNPEYFA-KINGKNHIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEKKYSPGWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAP 627
            VY FL    GVRW+ PG  GTV+P + N+          P +  R    +S   D E +      WYRR   GS  G    NHSF  W K+FG ++PEYFA +++G+   D V      + N   P V ++ IR+   YFE +  A    ++P DS  L+             ++   G  SNLVW FVN VAL   +K P + I   AY    + P
Sbjct:  314 VYEFLERTFGVRWYWPGKYGTVVPPAANVKVTRLLQTGTPSYSTRGFL-YSIPRDPEISTAEFTRWYRRNRVGSAHGNPLANHSFNAWPKKFGASHPEYFALQVDGRRKTDEVAGGHVCLSN---PEVLKETIREKLEYFEKNPGAGFASVMPGDSFGLYRCICEDCQKPLQPERAPAGTASNLVWGFVNKVALGVAEKMPDRYITCCAYGDYRQRP 526          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A1G1A7R7_9BACT (Uncharacterized protein n=1 Tax=Lentisphaerae bacterium RIFOXYA12_FULL_48_11 TaxID=1798578 RepID=A0A1G1A7R7_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 3.970e-20
Identity = 70/231 (30.30%), Postives = 107/231 (46.32%), Query Frame = 1
Query:    1 VYRFLNDQGVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLSGFSFNEDS---EAAIWYRRVG--FGSK----GYVNLNHSFTNWAKRFGDTNPEYFAKINGKN-HIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEKKYSPGWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            VY FL   GVRW+MPG +G V+P   NI          P F YR L  ++ + D    +A +W  R+G  +G +    G+     ++ +        +PEY+A   GK  +    P  +  V   + PG+F+  ++    +F  + +  L  I+P D++V             PE+ Y+ G LS+ VW FVN VA+  ++  P K +   AY      PT I   SPNV V
Sbjct:  195 VYEFLRGIGVRWYMPGDLGEVVPARKNIELGCFDKLVRPDFPYRNLGDYTPHFDGGTKDAVLWRLRLGLAYGQELWGIGWTAHGLNYVHGRDEVKKAHPEYYALYGGKRMNGSPYPWWKEGVPCLSSPGLFQATVKYARDFFRIYPDDPLVSIMPADAYVSLCECELCRGKSTPERGYN-GQLSDYVWDFVNRVAIELYRTNPDKKVLCGAYGSYVLPPTKIAKLSPNVAV 424          
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Match: A0A848X381_9BACT (DUF4838 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A848X381_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-17
Identity = 72/230 (31.30%), Postives = 103/230 (44.78%), Query Frame = 1
Query:    1 VYRFLNDQGVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLSGFSFNEDSEAAIWYRRVG----FGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKNHIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHVLHDTSAATMSFIDPEKKYSP-----GWLSNLVWTFVNNVALRTHQKFPGKLIGSLAYSYQFEAPTTIEHFSPNVVV 663
            V  FL D GVRW+MPG +G ++P   +I          P F  R L+  +     +A +W  R+G    +G +    L+    N  +R     PE+FA   GK H    P+ +   L Y+   +F++ ++   T  + H +  +  I+P D +    T+         E K SP     G LSN VW FVN VA    +  P K I + AY    EAP  IE   PNV V
Sbjct:  195 VCGFLRDLGVRWYMPGEIGEILPEMKSIPLPKVDKTLHPDFPMRILNFRTAVYGRDAMMWGFRLGVRQPYGRQAAHGLHGMTDN--ERTLKNKPEWFALYGGKRHNH--PNIKNNQLCYSNGELFDEAVKFARTQLD-HFDMDVVSIMPPDGY----TAICQCKLC--EAKESPELGPRGMLSNYVWDFVNRVAKEVGKTHPDKRISNCAYGIYTEAPNNIEKLEPNVQV 413          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102126.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G0QPG1_9BACT1.300e-3938.57Carb-bd_dom_fam9 domain-containing protein n=1 Tax... [more]
A0A7X7MJY8_9BACT5.180e-3834.67DUF4838 domain-containing protein n=1 Tax=Oligosph... [more]
A0A7X8YYH3_9BACT2.780e-3233.06DUF4838 domain-containing protein n=1 Tax=Planctom... [more]
A0A7X9AYJ8_9BACT9.510e-2832.35DUF4838 domain-containing protein n=1 Tax=Oligosph... [more]
A0A7X7NBM3_9BACT2.450e-2735.47DUF4838 domain-containing protein n=1 Tax=Lentisph... [more]
A0A2M7KFV8_9BACT8.890e-2529.60Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
A0A7X8ZJ32_9BACT5.600e-2435.22DUF4838 domain-containing protein n=1 Tax=Lentisph... [more]
A0A7X7MKA4_9BACT8.620e-2334.10DUF4838 domain-containing protein (Fragment) n=1 T... [more]
A0A1G1A7R7_9BACT3.970e-2030.30Uncharacterized protein n=1 Tax=Lentisphaerae bact... [more]
A0A848X381_9BACT1.030e-1731.30DUF4838 domain-containing protein n=1 Tax=Verrucom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102126contigM-pyrifera_M_contig102126:2..664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.8
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog344747.PM8797T_27684
KEGG koko:K05988
KEGG ReactionR11309
KEGG Pathwayko00500,map00500
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Uncharacterised BCR, COG1649
EggNOG OGsCOG1649@1,COG1649@2,COG3525@1,COG3525@2
EC3.2.1.11
COG Functional cat.F
CAZyGH66
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size663
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.209991-CDS-M-pyrifera_M_contig102126:1..6641622815522.209991-CDS-M-pyrifera_M_contig102126:1..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102126 2..664 +
1692277448.5029368-CDS-M-pyrifera_M_contig102126:1..6641692277448.5029368-CDS-M-pyrifera_M_contig102126:1..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102126 2..664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102126.458.1prot_M-pyrifera_M_contig102126.458.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102126 2..664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102126.458.1

>prot_M-pyrifera_M_contig102126.458.1 ID=prot_M-pyrifera_M_contig102126.458.1|Name=mRNA_M-pyrifera_M_contig102126.458.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
VYRFLNDQGVRWFMPGSVGTVIPRSLNITYDGKSIEDWPHFGYRRLSGFS
FNEDSEAAIWYRRVGFGSKGYVNLNHSFTNWAKRFGDTNPEYFAKINGKN
HIDIVPDERRVVLNYTEPGVFEQVIRDVDTYFENHSEAKLFPIVPNDSHV
LHDTSAATMSFIDPEKKYSPGWLSNLVWTFVNNVALRTHQKFPGKLIGSL
AYSYQFEAPTTIEHFSPNVVV
back to top

mRNA from alignment at M-pyrifera_M_contig102126:2..664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102126.458.1 ID=mRNA_M-pyrifera_M_contig102126.458.1|Name=mRNA_M-pyrifera_M_contig102126.458.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig102126:2..664+ (Macrocystis pyrifera P11B4 male)
GTTTACAGATTTCTGAATGACCAGGGTGTCCGTTGGTTTATGCCGGGTTC AGTTGGCACGGTCATACCGCGCAGTTTGAATATTACCTACGATGGGAAAT CAATTGAGGATTGGCCGCATTTTGGTTATCGAAGGCTTAGCGGCTTCTCG TTTAACGAGGATTCCGAAGCTGCAATTTGGTACCGGCGGGTAGGGTTCGG GAGCAAAGGCTACGTTAATCTTAATCATAGTTTCACGAACTGGGCGAAAC GTTTCGGGGATACGAACCCAGAGTATTTTGCGAAAATAAACGGAAAGAAT CACATTGACATAGTGCCTGACGAAAGACGGGTAGTTCTTAATTACACCGA ACCAGGGGTGTTCGAACAGGTTATTCGTGACGTGGATACTTACTTCGAAA ACCATTCGGAAGCAAAGCTGTTCCCTATCGTCCCAAACGACTCCCACGTG CTGCACGATACCAGCGCAGCGACAATGTCGTTTATCGACCCTGAAAAAAA ATACTCGCCGGGGTGGCTTTCTAATCTCGTATGGACATTCGTAAATAACG TCGCGCTACGTACGCATCAGAAGTTTCCGGGGAAGCTTATAGGTAGTCTG GCTTACTCATATCAATTTGAAGCGCCGACGACGATCGAACATTTTTCGCC GAATGTTGTGGTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102126:2..664+

>mRNA_M-pyrifera_M_contig102126.458.1 ID=mRNA_M-pyrifera_M_contig102126.458.1|Name=mRNA_M-pyrifera_M_contig102126.458.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig102126:2..664+ (Macrocystis pyrifera P11B4 male)
GTTTACAGATTTCTGAATGACCAGGGTGTCCGTTGGTTTATGCCGGGTTC
AGTTGGCACGGTCATACCGCGCAGTTTGAATATTACCTACGATGGGAAAT
CAATTGAGGATTGGCCGCATTTTGGTTATCGAAGGCTTAGCGGCTTCTCG
TTTAACGAGGATTCCGAAGCTGCAATTTGGTACCGGCGGGTAGGGTTCGG
GAGCAAAGGCTACGTTAATCTTAATCATAGTTTCACGAACTGGGCGAAAC
GTTTCGGGGATACGAACCCAGAGTATTTTGCGAAAATAAACGGAAAGAAT
CACATTGACATAGTGCCTGACGAAAGACGGGTAGTTCTTAATTACACCGA
ACCAGGGGTGTTCGAACAGGTTATTCGTGACGTGGATACTTACTTCGAAA
ACCATTCGGAAGCAAAGCTGTTCCCTATCGTCCCAAACGACTCCCACGTG
CTGCACGATACCAGCGCAGCGACAATGTCGTTTATCGACCCTGAAAAAAA
ATACTCGCCGGGGTGGCTTTCTAATCTCGTATGGACATTCGTAAATAACG
TCGCGCTACGTACGCATCAGAAGTTTCCGGGGAAGCTTATAGGTAGTCTG
GCTTACTCATATCAATTTGAAGCGCCGACGACGATCGAACATTTTTCGCC
GAATGTTGTGGTTGTTTACAGATTTCTGAATGACCAGGGTGTCCGTTGGT
TTATGCCGGGTTCAGTTGGCACGGTCATACCGCGCAGTTTGAATATTACC
TACGATGGGAAATCAATTGAGGATTGGCCGCATTTTGGTTATCGAAGGCT
TAGCGGCTTCTCGTTTAACGAGGATTCCGAAGCTGCAATTTGGTACCGGC
GGGTAGGGTTCGGGAGCAAAGGCTACGTTAATCTTAATCATAGTTTCACG
AACTGGGCGAAACGTTTCGGGGATACGAACCCAGAGTATTTTGCGAAAAT
AAACGGAAAGAATCACATTGACATAGTGCCTGACGAAAGACGGGTAGTTC
TTAATTACACCGAACCAGGGGTGTTCGAACAGGTTATTCGTGACGTGGAT
ACTTACTTCGAAAACCATTCGGAAGCAAAGCTGTTCCCTATCGTCCCAAA
CGACTCCCACGTGCTGCACGATACCAGCGCAGCGACAATGTCGTTTATCG
ACCCTGAAAAAAAATACTCGCCGGGGTGGCTTTCTAATCTCGTATGGACA
TTCGTAAATAACGTCGCGCTACGTACGCATCAGAAGTTTCCGGGGAAGCT
TATAGGTAGTCTGGCTTACTCATATCAATTTGAAGCGCCGACGACGATCG
AACATTTTTCGCCGAATGTTGTGGTT
back to top