mRNA_M-pyrifera_M_contig102116.457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102116.457.1
Unique NamemRNA_M-pyrifera_M_contig102116.457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A1D6NT41_MAIZE (Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NT41_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 6.020e-9
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 FSKDDSATSSSPPTGSVPYRVRLEGSALSSR---QVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
             S++D+  SS P  G    +  + GSA   R   Q GVLRTNC+DCLDRTN+AQ   G  ALG  L ALG
Sbjct:  271 ISQEDTCGSSDPGNGIAEDKFEVNGSAQIKRPKFQKGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALG 340
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BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A1D6NT38_MAIZE (Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NT38_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 6.040e-9
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 FSKDDSATSSSPPTGSVPYRVRLEGSALSSR---QVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
             S++D+  SS P  G    +  + GSA   R   Q GVLRTNC+DCLDRTN+AQ   G  ALG  L ALG
Sbjct:  285 ISQEDTCGSSDPGNGIAEDKFEVNGSAQIKRPKFQKGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALG 354
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A1D6NT39_MAIZE (Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NT39_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 6.080e-9
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 FSKDDSATSSSPPTGSVPYRVRLEGSALSSR---QVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
             S++D+  SS P  G    +  + GSA   R   Q GVLRTNC+DCLDRTN+AQ   G  ALG  L ALG
Sbjct:  223 ISQEDTCGSSDPGNGIAEDKFEVNGSAQIKRPKFQKGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALG 292
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A1D6NT40_MAIZE (Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NT40_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 6.110e-9
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 FSKDDSATSSSPPTGSVPYRVRLEGSALSSR---QVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
             S++D+  SS P  G    +  + GSA   R   Q GVLRTNC+DCLDRTN+AQ   G  ALG  L ALG
Sbjct:  182 ISQEDTCGSSDPGNGIAEDKFEVNGSAQIKRPKFQKGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALG 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A1D6NT32_MAIZE (Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NT32_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 6.150e-9
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 FSKDDSATSSSPPTGSVPYRVRLEGSALSSR---QVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
             S++D+  SS P  G    +  + GSA   R   Q GVLRTNC+DCLDRTN+AQ   G  ALG  L ALG
Sbjct:  455 ISQEDTCGSSDPGNGIAEDKFEVNGSAQIKRPKFQKGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALG 524
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A1D6NT16_MAIZE (Phosphoinositide phosphatase SAC2 n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6NT16_MAIZE)

HSP 1 Score: 60.1 bits (144), Expect = 6.170e-9
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 FSKDDSATSSSPPTGSVPYRVRLEGSALSSR---QVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
             S++D+  SS P  G    +  + GSA   R   Q GVLRTNC+DCLDRTN+AQ   G  ALG  L ALG
Sbjct:  476 ISQEDTCGSSDPGNGIAEDKFEVNGSAQIKRPKFQKGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALG 545
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A834MP12_RHYFE (SAC domain-containing protein n=2 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834MP12_RHYFE)

HSP 1 Score: 58.9 bits (141), Expect = 1.590e-8
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   76 SALSSRQVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
            S  SSRQ GV+RTNCVDCLDRTN AQ  +G  ALG  L ALG
Sbjct:  474 SIFSSRQTGVIRTNCVDCLDRTNTAQFAIGKCALGFQLCALG 515
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A834MMW1_RHYFE (SAC domain-containing protein n=2 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834MMW1_RHYFE)

HSP 1 Score: 58.9 bits (141), Expect = 1.590e-8
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   76 SALSSRQVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
            S  SSRQ GV+RTNCVDCLDRTN AQ  +G  ALG  L ALG
Sbjct:  474 SIFSSRQTGVIRTNCVDCLDRTNTAQFAIGKCALGFQLCALG 515
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A077WIA0_9FUNG (SAC domain-containing protein n=3 Tax=Lichtheimia TaxID=688353 RepID=A0A077WIA0_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 1.590e-8
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   85 SSRQVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
            SSRQ GVLRTNC+DCLDRTN AQ L+G  ALG  L ALG
Sbjct:  505 SSRQFGVLRTNCIDCLDRTNAAQFLMGKCALGHQLYALG 543
[Close]
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Match: A0A150GW64_GONPE (SAC domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GW64_GONPE)

HSP 1 Score: 58.5 bits (140), Expect = 2.150e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   55 YRVRLEGSALSSRQVGVLRTNCVDCLDRTNLAQMLVGAHALGSMLAALG 201
            + +R  G ++  RQ GV+RTNC+DCLDRTN+ Q ++G  AL +MLAALG
Sbjct:  394 FFLRRAGGSVERRQSGVMRTNCIDCLDRTNVVQGVLGRKALETMLAALG 442
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102116.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D6NT41_MAIZE6.020e-950.00Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays... [more]
A0A1D6NT38_MAIZE6.040e-950.00Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays... [more]
A0A1D6NT39_MAIZE6.080e-950.00Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays... [more]
A0A1D6NT40_MAIZE6.110e-950.00Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays... [more]
A0A1D6NT32_MAIZE6.150e-950.00Phosphoinositide phosphatase SAC2 n=1 Tax=Zea mays... [more]
A0A1D6NT16_MAIZE6.170e-950.00Phosphoinositide phosphatase SAC2 n=3 Tax=Zea mays... [more]
A0A834MP12_RHYFE1.590e-869.05SAC domain-containing protein n=2 Tax=Rhynchophoru... [more]
A0A834MMW1_RHYFE1.590e-869.05SAC domain-containing protein n=2 Tax=Rhynchophoru... [more]
A0A077WIA0_9FUNG1.590e-874.36SAC domain-containing protein n=3 Tax=Lichtheimia ... [more]
A0A150GW64_GONPE2.150e-855.10SAC domain-containing protein n=1 Tax=Gonium pecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102116contigM-pyrifera_M_contig102116:231..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog38727.Pavir.Db01967.1.p
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SacI homology domain
EggNOG OGs37MZS@33090,3GETB@35493,3ICHU@38820,3KWKE@4447,COG5329@1,KOG1888@2759
COG Functional cat.I
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.175033-CDS-M-pyrifera_M_contig102116:230..4311622815522.175033-CDS-M-pyrifera_M_contig102116:230..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102116 231..431 +
1692277448.4869826-CDS-M-pyrifera_M_contig102116:230..4311692277448.4869826-CDS-M-pyrifera_M_contig102116:230..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102116 231..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102116.457.1prot_M-pyrifera_M_contig102116.457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102116 231..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102116.457.1

>prot_M-pyrifera_M_contig102116.457.1 ID=prot_M-pyrifera_M_contig102116.457.1|Name=mRNA_M-pyrifera_M_contig102116.457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
FSKDDSATSSSPPTGSVPYRVRLEGSALSSRQVGVLRTNCVDCLDRTNLA
QMLVGAHALGSMLAALG
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mRNA from alignment at M-pyrifera_M_contig102116:231..431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102116.457.1 ID=mRNA_M-pyrifera_M_contig102116.457.1|Name=mRNA_M-pyrifera_M_contig102116.457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig102116:231..431+ (Macrocystis pyrifera P11B4 male)
TTTTCGAAAGACGACTCTGCAACTTCTTCTTCTCCTCCAACTGGGAGTGT
TCCGTATCGCGTGCGATTGGAAGGTTCAGCTTTGTCGAGTCGTCAAGTTG
GTGTATTGCGAACGAATTGTGTGGATTGTTTGGATCGAACGAATCTTGCT
CAAATGCTTGTTGGTGCGCATGCACTTGGTTCCATGCTTGCAGCTCTTGG
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102116:231..431+

>mRNA_M-pyrifera_M_contig102116.457.1 ID=mRNA_M-pyrifera_M_contig102116.457.1|Name=mRNA_M-pyrifera_M_contig102116.457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig102116:231..431+ (Macrocystis pyrifera P11B4 male)
TTTTCGAAAGACGACTCTGCAACTTCTTCTTCTCCTCCAACTGGGAGTGT
TCCGTATCGCGTGCGATTGGAAGGTTCAGCTTTGTCGAGTCGTCAAGTTG
GTGTATTGCGAACGAATTGTGTGGATTGTTTGGATCGAACGAATCTTGCT
CAAATGCTTGTTGGTGCGCATGCACTTGGTTCCATGCTTGCAGCTCTTGG
TTTTTCGAAAGACGACTCTGCAACTTCTTCTTCTCCTCCAACTGGGAGTG
TTCCGTATCGCGTGCGATTGGAAGGTTCAGCTTTGTCGAGTCGTCAAGTT
GGTGTATTGCGAACGAATTGTGTGGATTGTTTGGATCGAACGAATCTTGC
TCAAATGCTTGTTGGTGCGCATGCACTTGGTTCCATGCTTGCAGCTCTTG
GT
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