mRNA_M-pyrifera_M_contig1021.452.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1021.452.1
Unique NamemRNA_M-pyrifera_M_contig1021.452.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1021.452.1 vs. uniprot
Match: D8LC49_ECTSI (TPR Domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC49_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.370e-66
Identity = 196/510 (38.43%), Postives = 249/510 (48.82%), Query Frame = 1 
Query:    1 MQGSLILLQKAKLLTSRKWPYLGDARLQARAVTLNNFGCLMKKWGKPRVGITYLARALKIQARAPGGADNPAGTHANMSAALSTLGLHRAAAVYAANAVGIASRAV-EKAGAVATAEDAPT-DGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG------SSSV-------HNDERVDSAAEQDRREGVAPLASNDDTDCAITFQQAASTDALSLEANRGGEGEPRGSCAKDD-SMAVAASHHEKE----STAGGLLAIAYFNLAVEREHLGQPEAALEAYEKARATAALHLDPEGPVAKGMELALETASDTALPV--FCTPRAVVQS--SCLSFPSIGKLYFGPKPQG--ATXXXXXXXXXXXXXXXHAKNDARESSGQSPLERAYLSQQPSP-PSHRDRXXXXXXXXXXXPTSVVGSGSPGPQRAGRWARDAQELVPPRNALTQISASSGGGGGMHGVRSEIQPSDKRQIRQEDGIL-WRARACAEWGCSPDDARRAQQ 1446
            ++ S+ LLQKA LLTSR  P+LG ARLQARA+TLNNFGCLMK WGKPR  + +LARAL+I+A+ PGGADNPAGTH NMSAALST+GLHR AA++A +A+ +AS+A+ E+    +  ED  T  G                                      G      SSSV        + E V S+A  D     +P AS+          +       +     G  G      A D+ S+    S  +++    S AGGLLAIA FNL VEREHLGQ +AA+ +Y+ AR+ A  HL PE PVAKG+E ALE AS  A     +   RA  +S  +  SFP IGKL FG K     +                H +    E++ +  LE AY S +P P P H+                   S S GPQRAGRW        P   A+ +              RSE   +  R+    DG L WRA ACAEW CSP +A  AQ+
Sbjct:   81 IKASVRLLQKASLLTSRGQPFLGKARLQARALTLNNFGCLMKNWGKPRESVKFLARALRIEAKVPGGADNPAGTHVNMSAALSTIGLHREAAMHAGHAIDLASQAMMEQEAGFSYVEDPNTASGDPADMDEDGAAVASVHLTSADSGTKGGVGDSGNSVPSVGVTGCLESSSVPRPEVQGEDGETVSSSAVADDGRTCSPEASSSVHHADHDVPEGGKKANPAENGTEGHGGXXXXESAGDEKSVQGDTSSVDRQDGPPSAAGGLLAIACFNLGVEREHLGQLDAAIASYKYARSAADQHLGPESPVAKGIETALEKASAAAATAASYSRKRAASRSRVAVSSFPCIGKLKFGQKNSQVPSRFDGVGLSPRCRSQQQHGEEVVGEATARDLLEHAYTSPRPCPAPPHKGSWARLGHVPTPRSAPPARSASRGPQRAGRWT---SVDTPAARAMKEAQR-----------RSEGWRNGGRKRGDVDGDLRWRALACAEWQCSPREALHAQR 576
[Close]
BLAST of mRNA_M-pyrifera_M_contig1021.452.1 vs. uniprot
Match: A0A7S1SZ57_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SZ57_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 5.630e-9
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    7 GSLILLQKAKLLTS--RKWPYLGDARLQARAVTLNNFGCLMKKWGKPRVGITYLARALKIQARAPGGA-DNPAGTHANMSAALSTLGLHRA 270
             S  + +KA++LT+         +AR++ RA+T NN GC  K+ GK    + YL R +KI+  A  GA +NPA TH N++A LSTLG H A
Sbjct:   18 ASYEMFKKAEMLTAPGSSLAEKPEARMRLRAITFNNLGCYYKQRGKLHAALHYLERTVKIEEAADIGAVENPASTHLNIAATLSTLGRHSA 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1021.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC49_ECTSI1.370e-6638.43TPR Domain containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1SZ57_9CHLO5.630e-942.86Hypothetical protein (Fragment) n=2 Tax=Tetraselmi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1021contigM-pyrifera_M_contig1021:9782..11311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog55529.EKX51798
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs28ZWJ@1,2R6RA@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-20_004460.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1446
Cds size1446
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.813883-CDS-M-pyrifera_M_contig1021:9781..101721622815521.813883-CDS-M-pyrifera_M_contig1021:9781..10172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1021 9782..10172 -
1692277448.3045104-CDS-M-pyrifera_M_contig1021:9781..101721692277448.3045104-CDS-M-pyrifera_M_contig1021:9781..10172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1021 9782..10172 -
1622815521.8266132-CDS-M-pyrifera_M_contig1021:10256..113111622815521.8266132-CDS-M-pyrifera_M_contig1021:10256..11311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1021 10257..11311 -
1692277448.314669-CDS-M-pyrifera_M_contig1021:10256..113111692277448.314669-CDS-M-pyrifera_M_contig1021:10256..11311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1021 10257..11311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1021.452.1prot_M-pyrifera_M_contig1021.452.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1021 9782..11311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1021.452.1

>prot_M-pyrifera_M_contig1021.452.1 ID=prot_M-pyrifera_M_contig1021.452.1|Name=mRNA_M-pyrifera_M_contig1021.452.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=482bp
MQGSLILLQKAKLLTSRKWPYLGDARLQARAVTLNNFGCLMKKWGKPRVG
ITYLARALKIQARAPGGADNPAGTHANMSAALSTLGLHRAAAVYAANAVG
IASRAVEKAGAVATAEDAPTDGGGGSKDHEASAENSVTNNNGGGGGGGGG
GGGGGSDDREGSSSVHNDERVDSAAEQDRREGVAPLASNDDTDCAITFQQ
AASTDALSLEANRGGEGEPRGSCAKDDSMAVAASHHEKESTAGGLLAIAY
FNLAVEREHLGQPEAALEAYEKARATAALHLDPEGPVAKGMELALETASD
TALPVFCTPRAVVQSSCLSFPSIGKLYFGPKPQGATPRGIRPSPRRLSPR
RHAKNDARESSGQSPLERAYLSQQPSPPSHRDRRARASRLSRMSPTSVVG
SGSPGPQRAGRWARDAQELVPPRNALTQISASSGGGGGMHGVRSEIQPSD
KRQIRQEDGILWRARACAEWGCSPDDARRAQQ
back to top

mRNA from alignment at M-pyrifera_M_contig1021:9782..11311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1021.452.1 ID=mRNA_M-pyrifera_M_contig1021.452.1|Name=mRNA_M-pyrifera_M_contig1021.452.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig1021:9782..11311- (Macrocystis pyrifera P11B4 male)
ATGCAGGGCTCCCTCATCTTGTTGCAGAAAGCCAAGCTCCTCACCAGCCG
AAAATGGCCGTATCTCGGCGATGCGCGACTGCAGGCGCGCGCGGTTACCT
TAAACAACTTCGGCTGCTTGATGAAAAAGTGGGGCAAACCTCGCGTCGGC
ATCACCTACCTAGCCCGCGCTCTTAAAATACAGGCCAGGGCTCCCGGGGG
CGCCGACAACCCGGCGGGCACGCACGCCAACATGAGCGCCGCGCTGAGCA
CCCTTGGGCTGCACCGTGCGGCGGCCGTCTATGCCGCCAATGCTGTTGGG
ATTGCATCACGGGCGGTGGAGAAAGCGGGTGCAGTTGCTACAGCCGAAGA
TGCCCCCACCGATGGTGGCGGTGGTAGCAAGGACCACGAAGCGTCGGCTG
AAAATTCTGTGACCAACAACAACGGTGGTGGGGGTGGTGGTGGGGGTGGG
GGTGGGGGTGGTGGTAGTGATGATCGTGAGGGGAGCAGCAGCGTACATAA
TGACGAGCGTGTCGACTCAGCGGCTGAACAAGACAGGAGAGAAGGAGTGG
CCCCACTGGCGTCTAATGATGACACCGACTGCGCAATAACCTTTCAACAG
GCAGCTAGTACAGATGCGTTATCCCTAGAAGCTAACCGCGGGGGAGAGGG
AGAACCACGAGGGAGTTGCGCCAAGGATGACAGCATGGCAGTGGCTGCGA
GCCACCACGAAAAAGAGTCTACGGCGGGAGGGTTGCTTGCCATCGCCTAC
TTCAACCTTGCAGTCGAGCGAGAGCACCTGGGGCAGCCGGAAGCCGCGCT
TGAGGCCTACGAGAAAGCGCGCGCTACCGCCGCCCTGCACTTGGACCCCG
AAGGCCCCGTCGCGAAAGGAATGGAGCTCGCGCTCGAAACAGCGTCCGAC
ACCGCTCTCCCCGTCTTCTGCACGCCGCGTGCGGTCGTCCAATCTTCGTG
CTTATCCTTCCCTTCCATCGGAAAACTGTATTTCGGCCCTAAACCCCAGG
GCGCAACTCCACGCGGTATTAGGCCCTCTCCCCGGCGACTTTCTCCGAGG
CGACAGTGGAACCAGAATAGTGAGGAGGAGAAGGAGACCTGCGACGTGGA
AAACGCGAGGCTTGGTGTGAGGCAAAGCCCGAGGCTCAGCGCGAAGAATG
ACGCGAGGGAAAGCTCAGGCCAGTCTCCCCTTGAGCGAGCTTACTTAAGC
CAGCAGCCGAGCCCCCCATCGCACCGCGACAGACGTGCGCGCGCGTCACG
GCTGTCCCGTATGTCGCCGACTTCCGTCGTCGGGTCCGGCTCTCCGGGCC
CTCAGCGAGCCGGGAGGTGGGCCCGCGATGCACAAGAACTGGTACCCCCC
CGAAACGCGCTTACTCAAATATCTGCGAGCAGTGGCGGTGGCGGTGGAAT
GCATGGTGTTAGAAGTGAGATACAACCCAGCGATAAACGGCAAATCAGAC
AAGAAGATGGCATTTTGTGGCGAGCGCGGGCGTGCGCGGAATGGGGCTGC
AGTCCAGACGACGCACGGCGAGCGCAGCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1021:9782..11311-

>mRNA_M-pyrifera_M_contig1021.452.1 ID=mRNA_M-pyrifera_M_contig1021.452.1|Name=mRNA_M-pyrifera_M_contig1021.452.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2892bp|location=Sequence derived from alignment at M-pyrifera_M_contig1021:9782..11311- (Macrocystis pyrifera P11B4 male)
ATGCAGGGCTCCCTCATCTTGTTGCAGAAAGCCAAGCTCCTCACCAGCCG
AAAATGGCCGTATCTCGGCGATGCGCGACTGCAGGCGCGCGCGGTTACCT
TAAACAACTTCGGCTGCTTGATGAAAAAGTGGGGCAAACCTCGCGTCGGC
ATCACCTACCTAGCCCGCGCTCTTAAAATACAGGCCAGGGCTCCCGGGGG
CGCCGACAACCCGGCGGGCACGCACGCCAACATGAGCGCCGCGCTGAGCA
CCCTTGGGCTGCACCGTGCGGCGGCCGTCTATGCCGCCAATGCTGTTGGG
ATTGCATCACGGGCGGTGGAGAAAGCGGGTGCAGTTGCTACAGCCGAAGA
TGCCCCCACCGATGGTGGCGGTGGTAGCAAGGACCACGAAGCGTCGGCTG
AAAATTCTGTGACCAACAACAACGGTGGTGGGGGTGGTGGTGGGGGTGGG
GGTGGGGGTGGTGGTAGTGATGATCGTGAGGGGAGCAGCAGCGTACATAA
TGACGAGCGTGTCGACTCAGCGGCTGAACAAGACAGGAGAGAAGGAGTGG
CCCCACTGGCGTCTAATGATGACACCGACTGCGCAATAACCTTTCAACAG
GCAGCTAGTACAGATGCGTTATCCCTAGAAGCTAACCGCGGGGGAGAGGG
AGAACCACGAGGGAGTTGCGCCAAGGATGACAGCATGGCAGTGGCTGCGA
GCCACCACGAAAAAGAGTCTACGGCGGGAGGGTTGCTTGCCATCGCCTAC
TTCAACCTTGCAGTCGAGCGAGAGCACCTGGGGCAGCCGGAAGCCGCGCT
TGAGGCCTACGAGAAAGCGCGCGCTACCGCCGCCCTGCACTTGGACCCCG
AAGGCCCCGTCGCGAAAGGAATGGAGCTCGCGCTCGAAACAGCGTCCGAC
ACCGCTCTCCCCGTCTTCTGCACGCCGCGTGCGGTCGTCCAATCTTCGTG
CTTATCCTTCCCTTCCATCGGAAAACTGTATTTCGGCCCTAAACCCCAGG
GCGCAACTCCACGCGGTATTAGGCCCTCTCCCCGGCGACTTTCTCCGAGG
CGACAATGCAGGGCTCCCTCATCTTGTTGCAGAAAGCCAAGCTCCTCACC
AGCCGAAAATGGCCGTATCTCGGCGATGCGCGACTGCAGGCGCGCGCGGT
TACCTTAAACAACTTCGGCTGCTTGATGAAAAAGTGGGGCAAACCTCGCG
TCGGCATCACCTACCTAGCCCGCGCTCTTAAAATACAGGCCAGGGCTCCC
GGGGGCGCCGACAACCCGGCGGGCACGCACGCCAACATGAGCGCCGCGCT
GAGCACCCTTGGGCTGCACCGTGCGGCGGCCGTCTATGCCGCCAATGCTG
TTGGGATTGCATCACGGGCGGTGGAGAAAGCGGGTGCAGTTGCTACAGCC
GAAGATGCCCCCACCGATGGTGGCGGTGGTAGCAAGGACCACGAAGCGTC
GGCTGAAAATTCTGTGACCAACAACAACGGTGGTGGGGGTGGTGGTGGGG
GTGGGGGTGGGGGTGGTGGTAGTGATGATCGTGAGGGGAGCAGCAGCGTA
CATAATGACGAGCGTGTCGACTCAGCGGCTGAACAAGACAGGAGAGAAGG
AGTGGCCCCACTGGCGTCTAATGATGACACCGACTGCGCAATAACCTTTC
AACAGGCAGCTAGTACAGATGCGTTATCCCTAGAAGCTAACCGCGGGGGA
GAGGGAGAACCACGAGGGAGTTGCGCCAAGGATGACAGCATGGCAGTGGC
TGCGAGCCACCACGAAAAAGAGTCTACGGCGGGAGGGTTGCTTGCCATCG
CCTACTTCAACCTTGCAGTCGAGCGAGAGCACCTGGGGCAGCCGGAAGCC
GCGCTTGAGGCCTACGAGAAAGCGCGCGCTACCGCCGCCCTGCACTTGGA
CCCCGAAGGCCCCGTCGCGAAAGGAATGGAGCTCGCGCTCGAAACAGCGT
CCGACACCGCTCTCCCCGTCTTCTGCACGCCGCGTGCGGTCGTCCAATCT
TCGTGCTTATCCTTCCCTTCCATCGGAAAACTGTATTTCGGCCCTAAACC
CCAGGGCGCAACTCCACGCGGTATTAGGCCCTCTCCCCGGCGACTTTCTC
CGAGGCGACACGCGAAGAATGACGCGAGGGAAAGCTCAGGCCAGTCTCCC
CTTGAGCGAGCTTACTTAAGCCAGCAGCCGAGCCCCCCATCGCACCGCGA
CAGACGTGCGCGCGCGTCACGGCTGTCCCGTATGTCGCCGACTTCCGTCG
TCGGGTCCGGCTCTCCGGGCCCTCAGCGAGCCGGGAGGTGGGCCCGCGAT
GCACAAGAACTGGTACCCCCCCGAAACGCGCTTACTCAAATATCTGCGAG
CAGTGGCGGTGGCGGTGGAATGCATGGTGTTAGAAGTGAGATACAACCCA
GCGATAAACGGCAAATCAGACAAGAAGATGGCATTTTGTGGCGAGCGCGG
GCGTGCGCGGAATGGGGCTGCAGTCCAGACGACGCACGGCGAGCGCAGCA
GCGCGAAGAATGACGCGAGGGAAAGCTCAGGCCAGTCTCCCCTTGAGCGA
GCTTACTTAAGCCAGCAGCCGAGCCCCCCATCGCACCGCGACAGACGTGC
GCGCGCGTCACGGCTGTCCCGTATGTCGCCGACTTCCGTCGTCGGGTCCG
GCTCTCCGGGCCCTCAGCGAGCCGGGAGGTGGGCCCGCGATGCACAAGAA
CTGGTACCCCCCCGAAACGCGCTTACTCAAATATCTGCGAGCAGTGGCGG
TGGCGGTGGAATGCATGGTGTTAGAAGTGAGATACAACCCAGCGATAAAC
GGCAAATCAGACAAGAAGATGGCATTTTGTGGCGAGCGCGGGCGTGCGCG
GAATGGGGCTGCAGTCCAGACGACGCACGGCGAGCGCAGCAG
back to top