mRNA_M-pyrifera_M_contig102096.450.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102096.450.1
Unique NamemRNA_M-pyrifera_M_contig102096.450.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102096.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102096contigM-pyrifera_M_contig102096:37..655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.7240005-CDS-M-pyrifera_M_contig102096:36..5191622815521.7240005-CDS-M-pyrifera_M_contig102096:36..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102096 37..519 -
1692277448.2670844-CDS-M-pyrifera_M_contig102096:36..5191692277448.2670844-CDS-M-pyrifera_M_contig102096:36..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102096 37..519 -
1622815521.7369547-CDS-M-pyrifera_M_contig102096:574..6551622815521.7369547-CDS-M-pyrifera_M_contig102096:574..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102096 575..655 -
1692277448.276636-CDS-M-pyrifera_M_contig102096:574..6551692277448.276636-CDS-M-pyrifera_M_contig102096:574..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102096 575..655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102096.450.1prot_M-pyrifera_M_contig102096.450.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102096 37..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102096.450.1

>prot_M-pyrifera_M_contig102096.450.1 ID=prot_M-pyrifera_M_contig102096.450.1|Name=mRNA_M-pyrifera_M_contig102096.450.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
LYLVEETIDKSKKGKSSRANPLLPFKLLITKPKVLAVGTMVSLSLGQTLL
MNYVITTATQDAFGLSGFQVGLMMVPVGLGNVIASFVGGRMADWGRRKKG
TGGRLIYSLSVSAGVCLIFPLFGFTCELHWIFPVIFSFIGGFCRTSSSPG
AMTYCIEQHQQSPGTVTAGLSAYMFLMVFLIQSIAPLI
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mRNA from alignment at M-pyrifera_M_contig102096:37..655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102096.450.1 ID=mRNA_M-pyrifera_M_contig102096.450.1|Name=mRNA_M-pyrifera_M_contig102096.450.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=619bp|location=Sequence derived from alignment at M-pyrifera_M_contig102096:37..655- (Macrocystis pyrifera P11B4 male)
CTCTACCTTGTGGAGGAGACCATCGACAAGTCGAAGAAGGGCAAGAGTTC
GCGCGCCAATCCGTTGCTGCCCTTCAAGCTGGTACGTTGCACCCGCATTG
GCAACCAGCCTTCACGTGAGCGCTGACGCCTTGCAGCTCATCACTAAGCC
GAAGGTGCTTGCGGTTGGCACGATGGTCAGCCTCTCCCTGGGGCAGACGT
TGTTGATGAACTACGTGATCACCACTGCCACCCAAGACGCATTTGGCCTG
TCTGGCTTCCAAGTGGGCCTGATGATGGTGCCTGTAGGCCTCGGCAACGT
CATTGCCTCGTTCGTGGGAGGAAGAATGGCCGACTGGGGCCGGCGCAAGA
AGGGCACCGGTGGCCGCCTGATCTACTCTCTCAGCGTGTCTGCTGGAGTT
TGCCTCATTTTCCCGCTCTTTGGCTTCACTTGCGAGCTGCACTGGATCTT
CCCTGTGATCTTCTCTTTCATTGGCGGCTTCTGCAGGACGTCTTCGTCGC
CGGGTGCGATGACCTACTGCATTGAGCAGCACCAACAGAGCCCTGGCACT
GTGACGGCAGGCCTCAGTGCATACATGTTCCTCATGGTGTTCCTCATCCA
GTCAATTGCGCCCCTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102096:37..655-

>mRNA_M-pyrifera_M_contig102096.450.1 ID=mRNA_M-pyrifera_M_contig102096.450.1|Name=mRNA_M-pyrifera_M_contig102096.450.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig102096:37..655- (Macrocystis pyrifera P11B4 male)
CTCTACCTTGTGGAGGAGACCATCGACAAGTCGAAGAAGGGCAAGAGTTC
GCGCGCCAATCCGTTGCTGCCCTTCAAGCTGCTCTACCTTGTGGAGGAGA
CCATCGACAAGTCGAAGAAGGGCAAGAGTTCGCGCGCCAATCCGTTGCTG
CCCTTCAAGCTGCTCATCACTAAGCCGAAGGTGCTTGCGGTTGGCACGAT
GGTCAGCCTCTCCCTGGGGCAGACGTTGTTGATGAACTACGTGATCACCA
CTGCCACCCAAGACGCATTTGGCCTGTCTGGCTTCCAAGTGGGCCTGATG
ATGGTGCCTGTAGGCCTCGGCAACGTCATTGCCTCGTTCGTGGGAGGAAG
AATGGCCGACTGGGGCCGGCGCAAGAAGGGCACCGGTGGCCGCCTGATCT
ACTCTCTCAGCGTGTCTGCTGGAGTTTGCCTCATTTTCCCGCTCTTTGGC
TTCACTTGCGAGCTGCACTGGATCTTCCCTGTGATCTTCTCTTTCATTGG
CGGCTTCTGCAGGACGTCTTCGTCGCCGGGTGCGATGACCTACTGCATTG
AGCAGCACCAACAGAGCCCTGGCACTGTGACGGCAGGCCTCAGTGCATAC
ATGTTCCTCATGGTGTTCCTCATCCAGTCAATTGCGCCCCTGATCCTCAT
CACTAAGCCGAAGGTGCTTGCGGTTGGCACGATGGTCAGCCTCTCCCTGG
GGCAGACGTTGTTGATGAACTACGTGATCACCACTGCCACCCAAGACGCA
TTTGGCCTGTCTGGCTTCCAAGTGGGCCTGATGATGGTGCCTGTAGGCCT
CGGCAACGTCATTGCCTCGTTCGTGGGAGGAAGAATGGCCGACTGGGGCC
GGCGCAAGAAGGGCACCGGTGGCCGCCTGATCTACTCTCTCAGCGTGTCT
GCTGGAGTTTGCCTCATTTTCCCGCTCTTTGGCTTCACTTGCGAGCTGCA
CTGGATCTTCCCTGTGATCTTCTCTTTCATTGGCGGCTTCTGCAGGACGT
CTTCGTCGCCGGGTGCGATGACCTACTGCATTGAGCAGCACCAACAGAGC
CCTGGCACTGTGACGGCAGGCCTCAGTGCATACATGTTCCTCATGGTGTT
CCTCATCCAGTCAATTGCGCCCCTGATC
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