mRNA_M-pyrifera_M_contig102084.449.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102084.449.1
Unique NamemRNA_M-pyrifera_M_contig102084.449.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A7Y2N917_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N917_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 9.030e-22
Identity = 52/91 (57.14%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 NWGRRRIWRRNKERKLLSSIDLN-DHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEE 270
            NW +RR WR  +E  L         H D Y D DLA AL  LP+K RSVVVLRHLLGYSER+TAE LGIS GT KSR+SR +++LR  L +
Sbjct:   75 NWAQRRRWRTKRESDLHRQTRPQLIHSDYYHDPDLATALVSLPVKQRSVVVLRHLLGYSERETAEILGISTGTVKSRLSRSMDQLRYLLAD 165          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A349BC66_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BC66_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 5.950e-16
Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEE 270
            NW R  + RR  E +L  S  + + +D  V  DL  AL  L +K RSVVVLRH+LGYS  +TA+ LGIS GT KSR+SR L RLR+ LE+
Sbjct:   83 NWARSWLRRRRFEHELPESRPV-EVRDPDVRADLDRALASLDVKHRSVVVLRHVLGYSSLETAKTLGISEGTVKSRLSRALVRLRNELED 171          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A349B172_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B172_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 1.040e-14
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEES 273
            NW R  + RR +E  L    +L D  D  VD D+ +AL +L ++ R+VVV+RHL+G S  +TAE LG++ GT KSR++R L+RLR+ L +S
Sbjct:  105 NWTRNLLRRRRREDLLARLPELAD-TDPTVDIDVGEALDRLDIEHRTVVVMRHLIGCSTAETAEYLGVAEGTVKSRLARALDRLRADLGDS 194          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A7V9QTY9_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9QTY9_9ACTN)

HSP 1 Score: 71.2 bits (173), Expect = 1.840e-13
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   22 WRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLE 267
            WRR +   L++ I  +  +      DL  AL  LP + R VVVLRH L  SERDTA+ALG+S GT KS  SRGL R+R+ ++
Sbjct:   80 WRRRRREVLVNDIPESGQEQESRHLDLVRALQALPARERQVVVLRHYLDQSERDTADALGVSVGTVKSSGSRGLARMRAFMD 161          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A2D8LUA9_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LUA9_9ACTN)

HSP 1 Score: 68.9 bits (167), Expect = 1.680e-12
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   22 WRRNKERKLLSSIDLNDHQDIY------VDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLE 267
            W R++ RK +  +  ++  D        VD  L  AL  LP++ R+VVV R+LL +SE  TAEAL I+PGT KSR+SRGL+RL + +E
Sbjct:   87 WARSRRRKWMREVFRSESPDREAPPTPEVDPSLDRALAALPVEQRAVVVCRYLLDWSEFQTAEALQIAPGTVKSRLSRGLDRLATTME 174          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A8H9KRU1_9MICO (DNA-directed RNA polymerase sigma-70 factor n=1 Tax=Knoellia flava TaxID=913969 RepID=A0A8H9KRU1_9MICO)

HSP 1 Score: 67.8 bits (164), Expect = 3.730e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   13 RRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHL 264
            RR WR N   ++  +   +  + + +  +LA AL  LP++ R  VVLRH +G SER+TA+AL +S GT KS  SRGL RLR+ L
Sbjct:   74 RRRWRENLTDEVPDTGRPDRSEHVALADELASALATLPVRERQCVVLRHHIGLSERETADALDVSTGTVKSSTSRGLTRLRTLL 157          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A2E7T283_9ACTN (RNA polymerase subunit sigma n=3 Tax=Bacteria TaxID=2 RepID=A0A2E7T283_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 6.190e-12
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 NWGR---RRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEESS 276
            NW R   RR  R  ++R L+   ++ +  D  VD DL  A+  L    R+VVV R  +G+S ++TAEALG+ PGT KSR+SR L++L   LE+SS
Sbjct:  107 NWARSWLRRTRREREKRPLIVKEEMAE--DPIVDVDLERAMATLTPGHRTVVVARFFMGWSIQETAEALGLRPGTVKSRLSRALKQLAGELEDSS 199          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A520XZZ6_9ACTN (RNA polymerase sigma factor n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XZZ6_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 NWGRRRIWRRNKERKLL---SSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEE 270
            NW R   W R   R+L      I+L    D+ +D  LAD    L LK+RSVVV R+LL +S  +TAEAL ++PGT KSR+S GL++L   L E
Sbjct:   89 NWAR--SWHRKLARRLPWTDDGIELPRTPDVTLDAALAD----LDLKYRSVVVCRYLLDWSTDETAEALELAPGTVKSRLSTGLDKLHHALAE 175          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A1Q5B9A8_9ACTN (RNA polymerase subunit sigma-24 n=1 Tax=Micromonospora sp. CB01531 TaxID=1718947 RepID=A0A1Q5B9A8_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 1.190e-11
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   10 RRRIWRRNKER-KLLSSIDLNDHQDIYVD-QDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLR 255
            RRR WRR +   ++   +DL   Q   VD Q L + LG+LP + R+V+VLR     S  +TAEALGISPGT KS+ +RGLE LR
Sbjct:   74 RRRPWRREQATDEVPDQVDLALPQTALVDRQALLELLGELPPRRRAVIVLRFYCDLSVEETAEALGISPGTVKSQAARGLEMLR 157          
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: UPI0019430969 (SigE family RNA polymerase sigma factor n=1 Tax=Actinoplanes couchii TaxID=403638 RepID=UPI0019430969)

HSP 1 Score: 66.6 bits (161), Expect = 1.260e-11
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    1 NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLE 267
            +W RRR W    +    ++   + ++ I   Q L  AL KLP K R+V+VLR+    SE DTA+ +G S G+ KS+ SRGL+RLR HL+
Sbjct:   71 SWRRRRSWGEIPQLPADTARADDPYEQIEHRQQLYAALRKLPPKMRAVLVLRYFQDMSEADTADIMGCSVGSVKSQASRGLQRLRDHLD 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N917_9ACTN9.030e-2257.14Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A349BC66_9ACTN5.950e-1652.22RNA polymerase subunit sigma n=1 Tax=Acidimicrobia... [more]
A0A349B172_9ACTN1.040e-1446.15RNA polymerase subunit sigma n=1 Tax=Acidimicrobia... [more]
A0A7V9QTY9_9ACTN1.840e-1347.56Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2D8LUA9_9ACTN1.680e-1245.45RNA polymerase subunit sigma n=1 Tax=Acidimicrobia... [more]
A0A8H9KRU1_9MICO3.730e-1245.24DNA-directed RNA polymerase sigma-70 factor n=1 Ta... [more]
A0A2E7T283_9ACTN6.190e-1244.21RNA polymerase subunit sigma n=3 Tax=Bacteria TaxI... [more]
A0A520XZZ6_9ACTN1.070e-1146.24RNA polymerase sigma factor n=2 Tax=Acidimicrobial... [more]
A0A1Q5B9A8_9ACTN1.190e-1150.00RNA polymerase subunit sigma-24 n=1 Tax=Micromonos... [more]
UPI00194309691.260e-1142.70SigE family RNA polymerase sigma factor n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102084contigM-pyrifera_M_contig102084:385..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.9
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog1313172.YM304_09240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.belongs to the sigma-70 factor family, ECF subfamily
EggNOG OGs2IHVZ@201174,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.686841-CDS-M-pyrifera_M_contig102084:384..6631622815521.686841-CDS-M-pyrifera_M_contig102084:384..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102084 385..663 -
1692277448.2523868-CDS-M-pyrifera_M_contig102084:384..6631692277448.2523868-CDS-M-pyrifera_M_contig102084:384..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102084 385..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102084.449.1prot_M-pyrifera_M_contig102084.449.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102084 385..663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102084.449.1

>prot_M-pyrifera_M_contig102084.449.1 ID=prot_M-pyrifera_M_contig102084.449.1|Name=mRNA_M-pyrifera_M_contig102084.449.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVV
LRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEESS*
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mRNA from alignment at M-pyrifera_M_contig102084:385..663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102084.449.1 ID=mRNA_M-pyrifera_M_contig102084.449.1|Name=mRNA_M-pyrifera_M_contig102084.449.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig102084:385..663- (Macrocystis pyrifera P11B4 male)
AACTGGGGCCGTCGTCGGATCTGGCGACGCAACAAGGAGCGCAAGCTCCT GTCGTCGATCGATCTGAACGACCACCAAGACATCTACGTCGATCAGGATC TTGCCGATGCGCTCGGCAAGCTGCCCCTCAAGTTCCGCTCGGTGGTGGTC CTGCGGCACCTGCTCGGCTACTCCGAACGAGACACTGCCGAAGCCCTCGG CATCTCGCCGGGCACGGCGAAGAGCCGTATGAGCCGGGGCCTGGAACGTT TGCGCTCCCATCTCGAGGAGTCCTCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102084:385..663-

>mRNA_M-pyrifera_M_contig102084.449.1 ID=mRNA_M-pyrifera_M_contig102084.449.1|Name=mRNA_M-pyrifera_M_contig102084.449.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig102084:385..663- (Macrocystis pyrifera P11B4 male)
AACTGGGGCCGTCGTCGGATCTGGCGACGCAACAAGGAGCGCAAGCTCCT
GTCGTCGATCGATCTGAACGACCACCAAGACATCTACGTCGATCAGGATC
TTGCCGATGCGCTCGGCAAGCTGCCCCTCAAGTTCCGCTCGGTGGTGGTC
CTGCGGCACCTGCTCGGCTACTCCGAACGAGACACTGCCGAAGCCCTCGG
CATCTCGCCGGGCACGGCGAAGAGCCGTATGAGCCGGGGCCTGGAACGTT
TGCGCTCCCATCTCGAGGAGTCCTCATGAAACTGGGGCCGTCGTCGGATC
TGGCGACGCAACAAGGAGCGCAAGCTCCTGTCGTCGATCGATCTGAACGA
CCACCAAGACATCTACGTCGATCAGGATCTTGCCGATGCGCTCGGCAAGC
TGCCCCTCAAGTTCCGCTCGGTGGTGGTCCTGCGGCACCTGCTCGGCTAC
TCCGAACGAGACACTGCCGAAGCCCTCGGCATCTCGCCGGGCACGGCGAA
GAGCCGTATGAGCCGGGGCCTGGAACGTTTGCGCTCCCATCTCGAGGAGT
CCTCATGA
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