mRNA_M-pyrifera_M_contig102084.449.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A7Y2N917_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N917_9ACTN) HSP 1 Score: 92.8 bits (229), Expect = 9.030e-22 Identity = 52/91 (57.14%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 NWGRRRIWRRNKERKLLSSIDLN-DHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEE 270 NW +RR WR +E L H D Y D DLA AL LP+K RSVVVLRHLLGYSER+TAE LGIS GT KSR+SR +++LR L + Sbjct: 75 NWAQRRRWRTKRESDLHRQTRPQLIHSDYYHDPDLATALVSLPVKQRSVVVLRHLLGYSERETAEILGISTGTVKSRLSRSMDQLRYLLAD 165
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A349BC66_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BC66_9ACTN) HSP 1 Score: 77.8 bits (190), Expect = 5.950e-16 Identity = 47/90 (52.22%), Postives = 59/90 (65.56%), Query Frame = 1 Query: 1 NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEE 270 NW R + RR E +L S + + +D V DL AL L +K RSVVVLRH+LGYS +TA+ LGIS GT KSR+SR L RLR+ LE+ Sbjct: 83 NWARSWLRRRRFEHELPESRPV-EVRDPDVRADLDRALASLDVKHRSVVVLRHVLGYSSLETAKTLGISEGTVKSRLSRALVRLRNELED 171
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A349B172_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B172_9ACTN) HSP 1 Score: 75.1 bits (183), Expect = 1.040e-14 Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEES 273 NW R + RR +E L +L D D VD D+ +AL +L ++ R+VVV+RHL+G S +TAE LG++ GT KSR++R L+RLR+ L +S Sbjct: 105 NWTRNLLRRRRREDLLARLPELAD-TDPTVDIDVGEALDRLDIEHRTVVVMRHLIGCSTAETAEYLGVAEGTVKSRLARALDRLRADLGDS 194
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A7V9QTY9_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9QTY9_9ACTN) HSP 1 Score: 71.2 bits (173), Expect = 1.840e-13 Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 22 WRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLE 267 WRR + L++ I + + DL AL LP + R VVVLRH L SERDTA+ALG+S GT KS SRGL R+R+ ++ Sbjct: 80 WRRRRREVLVNDIPESGQEQESRHLDLVRALQALPARERQVVVLRHYLDQSERDTADALGVSVGTVKSSGSRGLARMRAFMD 161
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A2D8LUA9_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LUA9_9ACTN) HSP 1 Score: 68.9 bits (167), Expect = 1.680e-12 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1 Query: 22 WRRNKERKLLSSIDLNDHQDIY------VDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLE 267 W R++ RK + + ++ D VD L AL LP++ R+VVV R+LL +SE TAEAL I+PGT KSR+SRGL+RL + +E Sbjct: 87 WARSRRRKWMREVFRSESPDREAPPTPEVDPSLDRALAALPVEQRAVVVCRYLLDWSEFQTAEALQIAPGTVKSRLSRGLDRLATTME 174
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A8H9KRU1_9MICO (DNA-directed RNA polymerase sigma-70 factor n=1 Tax=Knoellia flava TaxID=913969 RepID=A0A8H9KRU1_9MICO) HSP 1 Score: 67.8 bits (164), Expect = 3.730e-12 Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 13 RRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHL 264 RR WR N ++ + + + + + +LA AL LP++ R VVLRH +G SER+TA+AL +S GT KS SRGL RLR+ L Sbjct: 74 RRRWRENLTDEVPDTGRPDRSEHVALADELASALATLPVRERQCVVLRHHIGLSERETADALDVSTGTVKSSTSRGLTRLRTLL 157
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A2E7T283_9ACTN (RNA polymerase subunit sigma n=3 Tax=Bacteria TaxID=2 RepID=A0A2E7T283_9ACTN) HSP 1 Score: 68.2 bits (165), Expect = 6.190e-12 Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1 Query: 1 NWGR---RRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEESS 276 NW R RR R ++R L+ ++ + D VD DL A+ L R+VVV R +G+S ++TAEALG+ PGT KSR+SR L++L LE+SS Sbjct: 107 NWARSWLRRTRREREKRPLIVKEEMAE--DPIVDVDLERAMATLTPGHRTVVVARFFMGWSIQETAEALGLRPGTVKSRLSRALKQLAGELEDSS 199
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A520XZZ6_9ACTN (RNA polymerase sigma factor n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XZZ6_9ACTN) HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11 Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 1 Query: 1 NWGRRRIWRRNKERKLL---SSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLEE 270 NW R W R R+L I+L D+ +D LAD L LK+RSVVV R+LL +S +TAEAL ++PGT KSR+S GL++L L E Sbjct: 89 NWAR--SWHRKLARRLPWTDDGIELPRTPDVTLDAALAD----LDLKYRSVVVCRYLLDWSTDETAEALELAPGTVKSRLSTGLDKLHHALAE 175
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: A0A1Q5B9A8_9ACTN (RNA polymerase subunit sigma-24 n=1 Tax=Micromonospora sp. CB01531 TaxID=1718947 RepID=A0A1Q5B9A8_9ACTN) HSP 1 Score: 66.6 bits (161), Expect = 1.190e-11 Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 10 RRRIWRRNKER-KLLSSIDLNDHQDIYVD-QDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLR 255 RRR WRR + ++ +DL Q VD Q L + LG+LP + R+V+VLR S +TAEALGISPGT KS+ +RGLE LR Sbjct: 74 RRRPWRREQATDEVPDQVDLALPQTALVDRQALLELLGELPPRRRAVIVLRFYCDLSVEETAEALGISPGTVKSQAARGLEMLR 157
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Match: UPI0019430969 (SigE family RNA polymerase sigma factor n=1 Tax=Actinoplanes couchii TaxID=403638 RepID=UPI0019430969) HSP 1 Score: 66.6 bits (161), Expect = 1.260e-11 Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 1 NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVLRHLLGYSERDTAEALGISPGTAKSRMSRGLERLRSHLE 267 +W RRR W + ++ + ++ I Q L AL KLP K R+V+VLR+ SE DTA+ +G S G+ KS+ SRGL+RLR HL+ Sbjct: 71 SWRRRRSWGEIPQLPADTARADDPYEQIEHRQQLYAALRKLPPKMRAVLVLRYFQDMSEADTADIMGCSVGSVKSQASRGLQRLRDHLD 159 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102084.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig102084.449.1 >prot_M-pyrifera_M_contig102084.449.1 ID=prot_M-pyrifera_M_contig102084.449.1|Name=mRNA_M-pyrifera_M_contig102084.449.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp NWGRRRIWRRNKERKLLSSIDLNDHQDIYVDQDLADALGKLPLKFRSVVVback to top mRNA from alignment at M-pyrifera_M_contig102084:385..663- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig102084.449.1 ID=mRNA_M-pyrifera_M_contig102084.449.1|Name=mRNA_M-pyrifera_M_contig102084.449.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig102084:385..663- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig102084:385..663- >mRNA_M-pyrifera_M_contig102084.449.1 ID=mRNA_M-pyrifera_M_contig102084.449.1|Name=mRNA_M-pyrifera_M_contig102084.449.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig102084:385..663- (Macrocystis pyrifera P11B4 male)back to top |