mRNA_M-pyrifera_M_contig102080.448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102080.448.1
Unique NamemRNA_M-pyrifera_M_contig102080.448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: UPI001C898EA1 (peroxisomal membrane protein 11C isoform X1 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C898EA1)

HSP 1 Score: 62.8 bits (151), Expect = 4.320e-9
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREI----------RRRDLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGLLH 408
            D+L + +S    V+  LYYP EH+AWA DA +I++K   S   WVLS  LW + +I  I   + ++  L R++          R R+ ++ Q+   R Q+R     ++   +DLC A +W     L +     + +GL G   S  GLL 
Sbjct:   86 DALVRWMSIVNNVADQLYYPCEHIAWAADAELIKTK---SDKWWVLSTGLWGISLILNILRSIRSVLILKRKVQTCQRSGSAQRSREEAFSQEAALRRQIRGEVFGILSGLADLCNAIHWMPPGFLWAGRFPPWLVGLMGTTSSLIGLLQ 232          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A2R8QCF7_DANRE (Peroxisomal biogenesis factor 11 gamma n=2 Tax=Danio rerio TaxID=7955 RepID=A0A2R8QCF7_DANRE)

HSP 1 Score: 60.1 bits (144), Expect = 4.130e-8
Identity = 45/150 (30.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIRR---------RDLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGLLHS 411
            D+  + +S    V+  LYYP EH+AWA DA +I++K   S   WVLS  LW   ++  I   + ++  L R+ ++         R+  + QK   + Q+RA    ++ +++DLC A +W     L +     + +GL G   S  GLL +
Sbjct:   86 DARVRWMSVLSNVADQLYYPCEHIAWAADAELIKTK---SDRWWVLSTGLWGASLVLGILRSIRSILILKRKAQKCHRSGSAESREEVFSQKAALKRQIRAELFSILSSSADLCNAVHWMPPGFLWAGRFPPWLVGLMGTASSLIGLLQT 232          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A498MMV5_LABRO (FYN-binding-like isoform X1 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498MMV5_LABRO)

HSP 1 Score: 60.5 bits (145), Expect = 6.260e-8
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIR--RRDLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGLLHS 411
            D+L + +S    V+  LYYP EH+AWA DA ++++K   S   WVLS  LW   +I  I   +  +  L R+ +  +R+ ++ QK   R Q+R     ++ + +DL  A +W     L +     + +GL G   S  GLL +
Sbjct:  531 DALVRWMSVLSNVADQLYYPCEHIAWAADAQLVKTK---SDRWWVLSTGLWGASLILSILRSVRNILILKRKAQTCQREEAFSQKAALRRQIRGEAFSILSSLADLGNAVHWMPPGFLWAGRFPPWLVGLMGTTSSLIGLLQT 670          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A498LJU2_LABRO (Solute carrier family 35 member E1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LJU2_LABRO)

HSP 1 Score: 60.5 bits (145), Expect = 6.560e-8
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIR--RRDLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGLLHS 411
            D+L + +S    V+  LYYP EH+AWA DA ++++K   S   WVLS  LW   +I  I   +  +  L R+ +  +R+ ++ QK   R Q+R     ++ + +DL  A +W     L +     + +GL G   S  GLL +
Sbjct:  907 DALVRWMSVLSNVADQLYYPCEHIAWAADAQLVKTK---SDRWWVLSTGLWGASLILSILRSVRNILILKRKAQTCQREEAFSQKAALRRQIRGEAFSILSSLADLGNAVHWMPPGFLWAGRFPPWLVGLMGTTSSLIGLLQT 1046          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A261XUH5_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XUH5_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 7.250e-8
Identity = 42/142 (29.58%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   31 RTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITS-----RLLTLN--TLSREIRRRDLSYDQ---KRDCRAQLRANRLQL----VCNASDLCLAGNWSLRSSPLGDFSIGLCGAVGSAAGLLHSF 414
            + +SMLLYYP+EH+ W     +I      S  + + SCR W  YV+ +        RLL +   T+ ++I+R  L  D+   K     +L A +++     + NA+ L L  +WSL  S   D ++G+CG + +   L+ ++
Sbjct:  126 QNLSMLLYYPMEHIYWLGAHRIIPLSEQKSNKIAMWSCRFWAAYVVLEFARLAEEWRLLKVKEVTIQKKIKRDLLQTDKGETKEKVLGELEAAKMRTKIGTIVNAAYLPLTVHWSLEQSSFPDVAVGVCGTLAAIGQLMTAW 267          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: UPI002013CF65 (peroxisomal membrane protein 11C n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013CF65)

HSP 1 Score: 58.2 bits (139), Expect = 2.100e-7
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIRR---------RDLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGLLHSFTS 420
            D+L + +S    V+  LYYP EH+AWA DA +I++K   S   WVLS   W + +I  I   + ++  L  ++++         R+ ++ Q+   R Q+R     ++ + +DL  A +W     L +     + +GL G V S  GLL   +S
Sbjct:   86 DALVRWMSILTNVADQLYYPCEHIAWAADAELIKTK---SDRWWVLSTGFWGMSLILSILRSIRSILILKGKVQKCQRSGSADSREEAFSQRAALRRQIRGEVFSILSSMADLSNAIHWMPPGFLWAGRFPPWLVGLMGTVSSLIGLLQMSSS 235          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A672M6N4_SINGR (Peroxisomal biogenesis factor 11 gamma n=11 Tax=Cyprinidae TaxID=7953 RepID=A0A672M6N4_SINGR)

HSP 1 Score: 57.8 bits (138), Expect = 3.040e-7
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIRR---------RDLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGLLH 408
            D+L + +S    V+  LYYP EH+AWA DA +I++K   S   WVLS  LW + +I  I   + ++  L R+ +          R+ ++ QK   + Q+R     ++ + +DL  A +W     L +     + +GL G   S  GLL 
Sbjct:   92 DALVRWMSILNNVADQLYYPCEHIAWAADAELIKTK---SDRWWVLSTGLWGISLILSILRSIRSIQILKRKSQTCQRSASAESREEAFSQKAVLQRQIRGEVFSILSSLADLSNAIHWMPPGFLWAGRFPPWLVGLMGTTSSLIGLLQ 237          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A6P8S8L8_GEOSA (peroxisomal membrane protein 11C isoform X2 n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8S8L8_GEOSA)

HSP 1 Score: 57.4 bits (137), Expect = 3.940e-7
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1
Query:   49 LYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIRRR------DLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGL 402
            LYYP EH+AWA DA VIR+K   S   W  S  LW L ++  I   L  L  L+R +R+       +LS+ ++      +++  L ++ N +DL  A NW     L +     + +GL G + S  G+
Sbjct:  103 LYYPCEHIAWAADAKVIRTK---SDKWWTFSTALWGLSLLLGILRSLRILCMLTRRLRKEKRHSFGELSHLKRVQLNTLVQSEALTIMSNLADLANAVNWMPPGFLWAGQFPPWLVGLMGTISSLIGI 227          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A8B9F651_9PSIT (Uncharacterized protein n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9F651_9PSIT)

HSP 1 Score: 56.2 bits (134), Expect = 9.620e-7
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIRRRDLSYD--QKRDCRAQLRANRLQLVCNASDLCLAGNW 330
            D L + LS    ++  LYYP EH+AWA DAG+IR++   +   W LS  LW L ++  I   L  L  L R++R+   S     +++ +AQ++A  L ++   +DL  A +W
Sbjct:   88 DGLVRALSVLCNMANQLYYPCEHIAWAADAGIIRTR---AQKWWTLSTGLWALSLLLGILRSLRILCQL-RKLRQHKWSSSPQSQKEAKAQVKAEVLSILAQMADLSNAIHW 195          
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Match: A0A3N0YPU9_ANAGA (Peroxisomal membrane protein 11C n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YPU9_ANAGA)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6
Identity = 45/144 (31.25%), Postives = 68/144 (47.22%), Query Frame = 1
Query:    1 DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRLWLLYVIAQITSRLLTLNTLSREIRRRDLSYDQKRDCRAQLRANRLQLVCNASDLCLAGNWS----LRSSPLGDFSIGLCGAVGSAAGLLHSFTS 420
            D+L + +S    V+  LYYP EH+AWA DA +I++K   S   WVLS   W + +I  I                R+ ++ QK   R Q+R     ++ + +DL  A +W     L +     + +GL G V S  GLL   +S
Sbjct:  551 DALVRWMSILTNVADQLYYPCEHIAWAADAELIKTK---SDRWWVLSTGFWGMSLILSIF---------------REEAFSQKAALRRQIRGEVFSILSSLADLSNAVHWMPPGFLWAGRFPPWLVGLMGTVSSLIGLLQMSSS 676          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102080.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C898EA14.320e-931.33peroxisomal membrane protein 11C isoform X1 n=1 Ta... [more]
A0A2R8QCF7_DANRE4.130e-830.00Peroxisomal biogenesis factor 11 gamma n=2 Tax=Dan... [more]
A0A498MMV5_LABRO6.260e-831.47FYN-binding-like isoform X1 n=1 Tax=Labeo rohita T... [more]
A0A498LJU2_LABRO6.560e-831.47Solute carrier family 35 member E1-like protein n=... [more]
A0A261XUH5_9FUNG7.250e-829.58Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
UPI002013CF652.100e-729.41peroxisomal membrane protein 11C n=1 Tax=Megalobra... [more]
A0A672M6N4_SINGR3.040e-730.20Peroxisomal biogenesis factor 11 gamma n=11 Tax=Cy... [more]
A0A6P8S8L8_GEOSA3.940e-732.81peroxisomal membrane protein 11C isoform X2 n=1 Ta... [more]
A0A8B9F651_9PSIT9.620e-734.82Uncharacterized protein n=1 Tax=Amazona collaria T... [more]
A0A3N0YPU9_ANAGA1.010e-631.25Peroxisomal membrane protein 11C n=1 Tax=Anabarili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102080contigM-pyrifera_M_contig102080:19..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog9986.ENSOCUP00000009338
Preferred namePEX11G
KEGG koko:K13353
KEGG TC1.A.101.1,3.A.20.1.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0006996,GO:0007031,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0016559,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031903,GO:0032535,GO:0032991,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044375,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098588,GO:0098805
EggNOG free text desc.regulation of peroxisome size
EggNOG OGs35IY7@314146,39UQT@33154,3BB6V@33208,3D4CB@33213,3J4PU@40674,4808R@7711,48VRB@7742,KOG4186@1,KOG4186@2759
COG Functional cat.U
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.641815-CDS-M-pyrifera_M_contig102080:18..4411622815521.641815-CDS-M-pyrifera_M_contig102080:18..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102080 19..441 +
1692277448.2387745-CDS-M-pyrifera_M_contig102080:18..4411692277448.2387745-CDS-M-pyrifera_M_contig102080:18..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102080 19..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102080.448.1prot_M-pyrifera_M_contig102080.448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102080 19..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102080.448.1

>prot_M-pyrifera_M_contig102080.448.1 ID=prot_M-pyrifera_M_contig102080.448.1|Name=mRNA_M-pyrifera_M_contig102080.448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
DSLQQLLSWTRTVSMLLYYPLEHLAWAKDAGVIRSKRVDSATLWVLSCRL
WLLYVIAQITSRLLTLNTLSREIRRRDLSYDQKRDCRAQLRANRLQLVCN
ASDLCLAGNWSLRSSPLGDFSIGLCGAVGSAAGLLHSFTS*
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mRNA from alignment at M-pyrifera_M_contig102080:19..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102080.448.1 ID=mRNA_M-pyrifera_M_contig102080.448.1|Name=mRNA_M-pyrifera_M_contig102080.448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig102080:19..441+ (Macrocystis pyrifera P11B4 male)
GACTCCCTCCAGCAGCTGCTGTCGTGGACTCGCACCGTTTCAATGCTCCT CTATTACCCACTGGAGCATTTGGCATGGGCGAAAGACGCAGGCGTGATCA GGAGCAAGAGAGTGGACTCTGCCACACTGTGGGTTCTCTCCTGTCGCCTG TGGTTGCTCTATGTCATCGCTCAGATCACCTCCAGACTCCTCACTCTCAA CACTCTCTCACGCGAGATTCGCAGACGTGACCTCAGCTACGACCAGAAGA GAGACTGCAGAGCCCAACTGAGGGCCAATCGCCTGCAGCTCGTGTGCAAC GCCAGTGATCTATGCCTCGCTGGCAACTGGTCCCTCAGAAGCTCTCCCCT GGGCGACTTCAGCATTGGCCTCTGTGGCGCCGTTGGCTCTGCTGCTGGAC TCCTCCACTCTTTCACCTCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102080:19..441+

>mRNA_M-pyrifera_M_contig102080.448.1 ID=mRNA_M-pyrifera_M_contig102080.448.1|Name=mRNA_M-pyrifera_M_contig102080.448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig102080:19..441+ (Macrocystis pyrifera P11B4 male)
GACTCCCTCCAGCAGCTGCTGTCGTGGACTCGCACCGTTTCAATGCTCCT
CTATTACCCACTGGAGCATTTGGCATGGGCGAAAGACGCAGGCGTGATCA
GGAGCAAGAGAGTGGACTCTGCCACACTGTGGGTTCTCTCCTGTCGCCTG
TGGTTGCTCTATGTCATCGCTCAGATCACCTCCAGACTCCTCACTCTCAA
CACTCTCTCACGCGAGATTCGCAGACGTGACCTCAGCTACGACCAGAAGA
GAGACTGCAGAGCCCAACTGAGGGCCAATCGCCTGCAGCTCGTGTGCAAC
GCCAGTGATCTATGCCTCGCTGGCAACTGGTCCCTCAGAAGCTCTCCCCT
GGGCGACTTCAGCATTGGCCTCTGTGGCGCCGTTGGCTCTGCTGCTGGAC
TCCTCCACTCTTTCACCTCGTAGGACTCCCTCCAGCAGCTGCTGTCGTGG
ACTCGCACCGTTTCAATGCTCCTCTATTACCCACTGGAGCATTTGGCATG
GGCGAAAGACGCAGGCGTGATCAGGAGCAAGAGAGTGGACTCTGCCACAC
TGTGGGTTCTCTCCTGTCGCCTGTGGTTGCTCTATGTCATCGCTCAGATC
ACCTCCAGACTCCTCACTCTCAACACTCTCTCACGCGAGATTCGCAGACG
TGACCTCAGCTACGACCAGAAGAGAGACTGCAGAGCCCAACTGAGGGCCA
ATCGCCTGCAGCTCGTGTGCAACGCCAGTGATCTATGCCTCGCTGGCAAC
TGGTCCCTCAGAAGCTCTCCCCTGGGCGACTTCAGCATTGGCCTCTGTGG
CGCCGTTGGCTCTGCTGCTGGACTCCTCCACTCTTTCACCTCGTAG
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