mRNA_M-pyrifera_M_contig102075.446.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102075.446.1
Unique NamemRNA_M-pyrifera_M_contig102075.446.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: UPI001CE04870 (alpha-glucosidase n=2 Tax=Pseudomonas sp. PDM16 TaxID=2769292 RepID=UPI001CE04870)

HSP 1 Score: 102 bits (255), Expect = 1.310e-22
Identity = 61/147 (41.50%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    4 GGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSVEAAVEQ 444
            G GEQF+   L G  LP+L +E+G GRGLQPI++  N  TA  GG W  SYA +P  LS+ GR    E  A+   D     +   V++ V++  +A R+  A      +   TA  GRM PLPAW+QRGAI+GL+ G+  V   ++Q
Sbjct:  185 GFGEQFSAFDLTGRRLPILVQEQGVGRGLQPITFAANL-TARAGGDWWTSYAPVPHYLSSKGRSFFSESGAYQVFDLRDKRR---VQLEVHAGQLAARIYTAADSAGQIAQHTAVVGRMPPLPAWTQRGAIVGLQGGTARVRGILDQ 327          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: A0A2D4SL37_9DELT (Alpha-glucosidase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D4SL37_9DELT)

HSP 1 Score: 101 bits (251), Expect = 4.440e-22
Identity = 54/142 (38.03%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    1 FGGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSV 426
            FG G Q ++L L GSALP+LTRE G GRG+QP+++++ ++  G GG W  + A   W LS  G G+ +E +  V LD     +     + ++S+ V +R+    +P   L+  T + GR   LP W   GAI+GL+ GS  V
Sbjct:  111 FGCGTQLSKLNLKGSALPILTREPGIGRGVQPLTFFM-ERMFGAGGEWHCTSAPSAWFLSTQGFGICIENEELVQLDFENPTEH---RLTIHSAHVQLRIFYGNTPKEILKEYTKHIGRFPVLPDWFHNGAIIGLQGGSAKV 248          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: A0A4D9CX93_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX93_9STRA)

HSP 1 Score: 100 bits (249), Expect = 8.490e-22
Identity = 59/143 (41.26%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    1 FGGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSVE 429
            FG G+ ++R  L G  +PV+  E+G GRGLQP ++ LN    G G +W  +Y A P  L++ GR + + G      D T    D V     +  S+   L +A SPL  +  L+  TGRMQPLPAW+QRG ++GLE GS  VE
Sbjct:  229 FGFGQHYSRWDLKGRRVPVIISEQGVGRGLQPTTFALNTFLHGVGSAWHTTYVAKPMYLTSRGRALSLVGPKVSFFDLT--LPDIVTAEYWSCRSMRGILYSAASPLETVALLSTETGRMQPLPAWTQRGVVVGLEGGSEEVE 369          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: A0A7C9LSG3_9DEIO (Alpha-glucosidase n=2 Tax=unclassified Deinococcus TaxID=2623546 RepID=A0A7C9LSG3_9DEIO)

HSP 1 Score: 100 bits (248), Expect = 1.150e-21
Identity = 62/144 (43.06%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    4 GGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQD---GVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSV 426
            GGGEQF+ L L G  LPVL  E+G GRG QP++W  N    G GG+W  SYA +P L     +G    G +   LD      D   G   + +  +S+ +RL AA +     RALTA TGRM PLPAW+ +GA+LG++ G+  V
Sbjct:  179 GGGEQFSTLNLRGRRLPVLVSEQGVGRGQQPLTWLANLTNNGAGGAWHSSYAPMPHLRLLDDQG---SGQSIWSLDTVPGALDTRGGRWRLEMTGASLHLRL-AAGNTRTLTRALTADTGRMAPLPAWTSQGALLGVQGGTARV 318          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: UPI0011EDF2D4 (alpha-glucosidase n=1 Tax=Actinomadura sp. K4S16 TaxID=1316147 RepID=UPI0011EDF2D4)

HSP 1 Score: 99.0 bits (245), Expect = 2.910e-21
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    4 GGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSVEAAVEQ 444
            G GEQFT   L G  +PV+ RE+G GRG QP++  ++   +G+GGSW+ +YA +P+  ++S RG  + G  +  LD +R    G+             L A  SP   L A TA TGRM  LPAW++ GA+LGL+ G+  V   V++
Sbjct:  188 GFGEQFTSFDLAGRRIPVIVREQGIGRGRQPLTAMVDL-VSGQGGSWDTTYAPIPFYATSSNRGFALTGGRYSVLDLSRP---GLAVAQTWGPRQGAELYAGASPAEVLAAHTASTGRMGALPAWTRDGAVLGLQGGTARVRRIVDE 330          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: UPI001658EAD5 (alpha-glucosidase n=1 Tax=Pseudomonas alcaligenes TaxID=43263 RepID=UPI001658EAD5)

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-20
Identity = 60/147 (40.82%), Postives = 82/147 (55.78%), Query Frame = 1
Query:    4 GGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSVEAAVEQ 444
            G GEQF+   L G  LP+L +E+G GRGLQPI+   N  TA  GG W  SYA +P  LS+ GR    E  A+   D     +   V++ V++  +A R+  A      +   TA  GRM PLPAW+Q+GAI+GL+ G+  V   + Q
Sbjct:  180 GFGEQFSAFDLAGRRLPILVQEQGVGRGLQPITLAANL-TARAGGDWWTSYAPVPHYLSSKGRSFFSESTAYQVFDLRDEHR---VQLEVHAGQLAARIYTAADAPGQIAQHTAVVGRMPPLPAWTQQGAIVGLQGGTQRVREILRQ 322          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: UPI00083585A5 (alpha-glucosidase n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00083585A5)

HSP 1 Score: 97.1 bits (240), Expect = 1.370e-20
Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    4 GGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSVEAAVE 441
            G GEQF    L G  +P+L RE+G GRG QP++  +N   +G+GGSW+ +YA +P+ L+++ RG  + G  +   D +   Q G+V     ++     L    SP + L A TA TG M+PLPAW+  GA+LGL+ G+  V   V+
Sbjct:  188 GFGEQFAPFDLAGRRVPILVREQGIGRGRQPLTAMVNL-ASGQGGSWDTTYAPMPFYLTSARRGFELTGGRYSVFDLS---QPGLVVAQTWAARQDAELYTGASPAQVLAAHTASTGAMRPLPAWTGDGAVLGLQGGTARVRKIVD 329          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: UPI001F4D73D3 (alpha-glucosidase n=1 Tax=Pseudomonas sp. A3.4 TaxID=2919919 RepID=UPI001F4D73D3)

HSP 1 Score: 96.7 bits (239), Expect = 1.860e-20
Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    1 FGGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSV 426
            +G GEQFT   L    LP+L +E+G GRGL+PI+   N   A  GG W  SYA +P  LS+  R    E  A+   D  RA  D  V++ V++S++A R+     P   + A T+  GRM PLP W+QRGAILG++ G+  V
Sbjct:  179 YGFGEQFTEFNLKRWRLPILVQEQGIGRGLEPITTGANLN-ARAGGDWWTSYAPVPHYLSSYMRSFFSESSAYQVFD-LRA--DDKVQLEVHASTLAARIYQGADPAALIEAHTSVVGRMPPLPDWTQRGAILGMQGGTAQV 316          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: A0A385Z5U4_9PSED (Alpha-glucosidase n=1 Tax=Pseudomonas cavernae TaxID=2320867 RepID=A0A385Z5U4_9PSED)

HSP 1 Score: 96.7 bits (239), Expect = 1.860e-20
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    1 FGGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSV 426
            FG GEQFT   L G  LP+L +E+G GRGLQP++   N  +A  GG W  SYA +P  L++  R    E  A+   D     +   V++ V+   +A R+ A  SP   + A T+  GRM PLP W+QRGAI+GL+ G+  V
Sbjct:  179 FGFGEQFTHFDLAGRRLPILVQEQGIGRGLQPLTLGANL-SARAGGDWWTSYAPVPHYLTSKLRSFFSESAAYQVFDLRDERR---VQLEVHEGQLAARIYAGDSPSALVEAHTSVVGRMPPLPDWTQRGAIVGLQGGTQRV 316          
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Match: UPI000A5422ED (alpha-glucosidase n=1 Tax=Pseudomonas sp. ML96 TaxID=1523503 RepID=UPI000A5422ED)

HSP 1 Score: 96.3 bits (238), Expect = 2.540e-20
Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    4 GGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEYSYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRLIAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSVEAAVEQ 444
            G GEQF+   L G  LP+L +E+G GRGL+PI+   N  TA  GG W  SYA +P  LS+ GR    E  A+   D     +   V++ V+   +A R+  A +    +   TA  GRM PLP W+QRGAI+GL+ GS  V   + Q
Sbjct:  177 GFGEQFSAFDLAGRRLPILVQEQGVGRGLEPITTAANL-TARAGGDWWTSYAPVPHYLSSKGRSFFSESAAYQVFDLRDEHR---VQLEVHEGRLAARIYTAANAPGQIAQHTAVVGRMPPLPDWTQRGAIVGLQGGSERVRGILHQ 319          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102075.446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CE048701.310e-2241.50alpha-glucosidase n=2 Tax=Pseudomonas sp. PDM16 Ta... [more]
A0A2D4SL37_9DELT4.440e-2238.03Alpha-glucosidase n=1 Tax=Deltaproteobacteria bact... [more]
A0A4D9CX93_9STRA8.490e-2241.26Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7C9LSG3_9DEIO1.150e-2143.06Alpha-glucosidase n=2 Tax=unclassified Deinococcus... [more]
UPI0011EDF2D42.910e-2139.46alpha-glucosidase n=1 Tax=Actinomadura sp. K4S16 T... [more]
UPI001658EAD51.000e-2040.82alpha-glucosidase n=1 Tax=Pseudomonas alcaligenes ... [more]
UPI00083585A51.370e-2039.04alpha-glucosidase n=1 Tax=Actinomadura hibisca Tax... [more]
UPI001F4D73D31.860e-2042.25alpha-glucosidase n=1 Tax=Pseudomonas sp. A3.4 Tax... [more]
A0A385Z5U4_9PSED1.860e-2041.55Alpha-glucosidase n=1 Tax=Pseudomonas cavernae Tax... [more]
UPI000A5422ED2.540e-2040.82alpha-glucosidase n=1 Tax=Pseudomonas sp. ML96 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102075contigM-pyrifera_M_contig102075:14..457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score106.3
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog266117.Rxyl_2586
Preferred nameyihQ
KEGG rclassRC00028,RC00059,RC00077,RC00451
KEGG koko:K01811,ko:K15922
KEGG ReactionR00802,R11543
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006790,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016787,GO:0016798,GO:0019637,GO:0034308,GO:0042180,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0061720,GO:0071704,GO:1901135,GO:1901136,GO:1901575,GO:1901615,GO:1902776,GO:1902777,GO:1990929
EggNOG free text desc.Belongs to the glycosyl hydrolase 31 family
EggNOG OGs2GP4V@201174,4CT44@84995,COG1501@1,COG1501@2
EC3.2.1.177,3.2.1.199
COG Functional cat.G
CAZyGH31
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.5601335-CDS-M-pyrifera_M_contig102075:13..4571622815521.5601335-CDS-M-pyrifera_M_contig102075:13..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102075 14..457 -
1692277448.201754-CDS-M-pyrifera_M_contig102075:13..4571692277448.201754-CDS-M-pyrifera_M_contig102075:13..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102075 14..457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102075.446.1prot_M-pyrifera_M_contig102075.446.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102075 14..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102075.446.1

>prot_M-pyrifera_M_contig102075.446.1 ID=prot_M-pyrifera_M_contig102075.446.1|Name=mRNA_M-pyrifera_M_contig102075.446.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
FGGGEQFTRLQLDGSALPVLTREKGTGRGLQPISWYLNQQTAGKGGSWEY
SYAALPWLLSASGRGVLVEGDAFVHLDATRAWQDGVVEVAVNSSSVAVRL
IAATSPLRALRALTAYTGRMQPLPAWSQRGAILGLEFGSGSVEAAVEQ
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mRNA from alignment at M-pyrifera_M_contig102075:14..457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102075.446.1 ID=mRNA_M-pyrifera_M_contig102075.446.1|Name=mRNA_M-pyrifera_M_contig102075.446.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig102075:14..457- (Macrocystis pyrifera P11B4 male)
TTTGGCGGAGGTGAGCAGTTCACCCGATTGCAGCTGGACGGTTCGGCGCT GCCAGTGCTGACCAGAGAGAAGGGGACTGGCCGTGGGCTGCAGCCCATCA GCTGGTACTTGAACCAGCAGACTGCGGGCAAGGGAGGGTCGTGGGAGTAC TCGTACGCTGCTCTGCCGTGGCTGCTGTCTGCGTCCGGCCGCGGTGTGTT GGTGGAGGGTGATGCGTTCGTGCACCTGGATGCGACACGTGCGTGGCAGG ATGGGGTGGTGGAGGTGGCTGTCAACTCCTCCTCCGTAGCTGTCCGTCTG ATCGCCGCGACTTCACCACTGCGCGCCCTGCGCGCACTGACTGCGTACAC GGGGCGCATGCAGCCGCTTCCCGCGTGGTCGCAGCGTGGAGCCATCCTGG GCCTGGAGTTTGGCAGCGGGTCTGTGGAGGCTGCGGTGGAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102075:14..457-

>mRNA_M-pyrifera_M_contig102075.446.1 ID=mRNA_M-pyrifera_M_contig102075.446.1|Name=mRNA_M-pyrifera_M_contig102075.446.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig102075:14..457- (Macrocystis pyrifera P11B4 male)
TTTGGCGGAGGTGAGCAGTTCACCCGATTGCAGCTGGACGGTTCGGCGCT
GCCAGTGCTGACCAGAGAGAAGGGGACTGGCCGTGGGCTGCAGCCCATCA
GCTGGTACTTGAACCAGCAGACTGCGGGCAAGGGAGGGTCGTGGGAGTAC
TCGTACGCTGCTCTGCCGTGGCTGCTGTCTGCGTCCGGCCGCGGTGTGTT
GGTGGAGGGTGATGCGTTCGTGCACCTGGATGCGACACGTGCGTGGCAGG
ATGGGGTGGTGGAGGTGGCTGTCAACTCCTCCTCCGTAGCTGTCCGTCTG
ATCGCCGCGACTTCACCACTGCGCGCCCTGCGCGCACTGACTGCGTACAC
GGGGCGCATGCAGCCGCTTCCCGCGTGGTCGCAGCGTGGAGCCATCCTGG
GCCTGGAGTTTGGCAGCGGGTCTGTGGAGGCTGCGGTGGAGCAGTTTGGC
GGAGGTGAGCAGTTCACCCGATTGCAGCTGGACGGTTCGGCGCTGCCAGT
GCTGACCAGAGAGAAGGGGACTGGCCGTGGGCTGCAGCCCATCAGCTGGT
ACTTGAACCAGCAGACTGCGGGCAAGGGAGGGTCGTGGGAGTACTCGTAC
GCTGCTCTGCCGTGGCTGCTGTCTGCGTCCGGCCGCGGTGTGTTGGTGGA
GGGTGATGCGTTCGTGCACCTGGATGCGACACGTGCGTGGCAGGATGGGG
TGGTGGAGGTGGCTGTCAACTCCTCCTCCGTAGCTGTCCGTCTGATCGCC
GCGACTTCACCACTGCGCGCCCTGCGCGCACTGACTGCGTACACGGGGCG
CATGCAGCCGCTTCCCGCGTGGTCGCAGCGTGGAGCCATCCTGGGCCTGG
AGTTTGGCAGCGGGTCTGTGGAGGCTGCGGTGGAGCAG
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