mRNA_M-pyrifera_M_contig102034.443.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102034.443.1
Unique NamemRNA_M-pyrifera_M_contig102034.443.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A3B9CZK5_9PLAN (DLH domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B9CZK5_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 2.140e-23
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKGRDL 162
            GQWHLGKSEPAGLAGN MHHTG ALA+EGYVV+CPDA GFEDRE+G + KG +L
Sbjct:   79 GQWHLGKSEPAGLAGNEMHHTGVALAKEGYVVICPDAWGFEDREKGYRQKGGNL 132
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A2D9ZBY0_9BACT (Uncharacterized protein n=2 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D9ZBY0_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 2.910e-23
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKG 153
            GQWHLGKSEPAGLAGN MHHTG AL REGYVVLCPDALGFEDR +G +L+G
Sbjct:   79 GQWHLGKSEPAGLAGNEMHHTGVALVREGYVVLCPDALGFEDRAKGFQLQG 129
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A2E3DJ09_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3DJ09_9PLAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-21
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKGRDL 162
            GQWHLGKSEPAGLAGN MHHTG AL + GYVVLCPDA+GFE+R +G KL G +L
Sbjct:   79 GQWHLGKSEPAGLAGNPMHHTGLALVKLGYVVLCPDAIGFEERAKGYKLSGANL 132
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A2D6SX39_9PLAN (DLH domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SX39_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 2.400e-21
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDK-LKG 153
            GQWHLGKSEPAGLAGN MHHTGAALAREGYVVLCPDAL FE+R+   K LKG
Sbjct:   79 GQWHLGKSEPAGLAGNPMHHTGAALAREGYVVLCPDALCFEERQDPTKKLKG 130
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A3D2Z4S9_9BACT (DLH domain-containing protein (Fragment) n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z4S9_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 3.270e-21
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKG 153
            GQWHLGKSEPAGLAG+ MHHTG ALA+EGYVVLCPDALGFE RE+G +  G
Sbjct:   80 GQWHLGKSEPAGLAGDPMHHTGVALAKEGYVVLCPDALGFEAREKGYQHTG 130
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A7C7V1B9_9PLAN (DLH domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V1B9_9PLAN)

HSP 1 Score: 92.4 bits (228), Expect = 3.690e-21
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKGRD 159
            GQWHLGKSEPAGLAG+ MHHTGAALAREGYVVLCPDAL FE+R Q  +LKG D
Sbjct:   79 GQWHLGKSEPAGLAGDPMHHTGAALAREGYVVLCPDALCFEER-QSARLKGGD 130
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A2E5KEX9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5KEX9_9PLAN)

HSP 1 Score: 92.0 bits (227), Expect = 4.510e-21
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKGRDL 162
            GQWHLGKSEPAGLAGN MHHTG ALA+ G++VLCPD LGFEDR +G  L G +L
Sbjct:   78 GQWHLGKSEPAGLAGNPMHHTGVALAKLGFIVLCPDTLGFEDRAKGFSLSGGNL 131
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A847Y8X8_9BACT (DLH domain-containing protein n=1 Tax=Thermogutta sp. TaxID=1962930 RepID=A0A847Y8X8_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 4.570e-21
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKGRD 159
            G+WHLGKSEPAGLAGN MHHTGAALAREGYVVLCPDAL FE+R Q   LKG D
Sbjct:   80 GEWHLGKSEPAGLAGNPMHHTGAALAREGYVVLCPDALCFEER-QSPYLKGGD 131
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BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A0S8KJI9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerae bacterium SM1_79 TaxID=1703410 RepID=A0A0S8KJI9_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 1.160e-20
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLKG 153
            G+WHLGKSEPAGLAGN MHHTG AL +EGYVVLCPDAL FE+R Q  +L+G
Sbjct:   79 GEWHLGKSEPAGLAGNPMHHTGVALVKEGYVVLCPDALCFEER-QSKRLRG 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Match: A0A3B8L0V2_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8L0V2_9PLAN)

HSP 1 Score: 86.7 bits (213), Expect = 3.090e-20
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDR-EQGDKLK 150
            GQ+HLGKSEPAGLAGN MHHTG ALAREGYVVLCPDAL FEDR +   KLK
Sbjct:   79 GQYHLGKSEPAGLAGNKMHHTGVALAREGYVVLCPDALCFEDRRDPTGKLK 129
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102034.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B9CZK5_9PLAN2.140e-2379.63DLH domain-containing protein n=1 Tax=Planctomycet... [more]
A0A2D9ZBY0_9BACT2.910e-2384.31Uncharacterized protein n=2 Tax=Rhodopirellula sp.... [more]
A0A2E3DJ09_9PLAN1.200e-2175.93Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2D6SX39_9PLAN2.400e-2184.62DLH domain-containing protein n=1 Tax=Planctomycet... [more]
A0A3D2Z4S9_9BACT3.270e-2180.39DLH domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7C7V1B9_9PLAN3.690e-2183.02DLH domain-containing protein n=1 Tax=Planctomycet... [more]
A0A2E5KEX9_9PLAN4.510e-2174.07Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A847Y8X8_9BACT4.570e-2183.02DLH domain-containing protein n=1 Tax=Thermogutta ... [more]
A0A0S8KJI9_9BACT1.160e-2076.47Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
A0A3B8L0V2_9PLAN3.090e-2082.35Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102034contigM-pyrifera_M_contig102034:503..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue9.2e-14
Seed eggNOG ortholog1123242.JH636434_gene4322
Preferred nameytaP
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Abhydrolase family
EggNOG OGs2J2QA@203682,COG1073@1,COG1073@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.2696345-CDS-M-pyrifera_M_contig102034:502..6641622815521.2696345-CDS-M-pyrifera_M_contig102034:502..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102034 503..664 -
1692277448.0233345-CDS-M-pyrifera_M_contig102034:502..6641692277448.0233345-CDS-M-pyrifera_M_contig102034:502..664Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102034 503..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102034.443.1prot_M-pyrifera_M_contig102034.443.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102034 503..664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102034.443.1

>prot_M-pyrifera_M_contig102034.443.1 ID=prot_M-pyrifera_M_contig102034.443.1|Name=mRNA_M-pyrifera_M_contig102034.443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
GQWHLGKSEPAGLAGNAMHHTGAALAREGYVVLCPDALGFEDREQGDKLK
GRDL
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mRNA from alignment at M-pyrifera_M_contig102034:503..664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102034.443.1 ID=mRNA_M-pyrifera_M_contig102034.443.1|Name=mRNA_M-pyrifera_M_contig102034.443.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig102034:503..664- (Macrocystis pyrifera P11B4 male)
GGGCAGTGGCATTTGGGGAAGAGTGAGCCGGCGGGGCTCGCGGGTAATGC
GATGCATCACACGGGGGCGGCGTTGGCTCGTGAGGGGTATGTCGTGCTCT
GTCCGGATGCACTTGGTTTCGAGGACCGGGAGCAAGGAGACAAGCTCAAG
GGGCGGGATCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102034:503..664-

>mRNA_M-pyrifera_M_contig102034.443.1 ID=mRNA_M-pyrifera_M_contig102034.443.1|Name=mRNA_M-pyrifera_M_contig102034.443.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig102034:503..664- (Macrocystis pyrifera P11B4 male)
GGGCAGTGGCATTTGGGGAAGAGTGAGCCGGCGGGGCTCGCGGGTAATGC
GATGCATCACACGGGGGCGGCGTTGGCTCGTGAGGGGTATGTCGTGCTCT
GTCCGGATGCACTTGGTTTCGAGGACCGGGAGCAAGGAGACAAGCTCAAG
GGGCGGGATCTGGGGCAGTGGCATTTGGGGAAGAGTGAGCCGGCGGGGCT
CGCGGGTAATGCGATGCATCACACGGGGGCGGCGTTGGCTCGTGAGGGGT
ATGTCGTGCTCTGTCCGGATGCACTTGGTTTCGAGGACCGGGAGCAAGGA
GACAAGCTCAAGGGGCGGGATCTG
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