mRNA_M-pyrifera_M_contig102032.442.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102032.442.1
Unique NamemRNA_M-pyrifera_M_contig102032.442.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: F0Y298_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y298_AURAN)

HSP 1 Score: 188 bits (477), Expect = 1.120e-55
Identity = 92/141 (65.25%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 AKHRNRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDA--PADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFAKGIVEEKKG 417
            A+H+NRLGVLLGNA TE  TKTLTHTLW+LLN + P++ Q  HRHNS+ALDLA+ A  PA G VYT+MG  ID +G+IIDPIKC W +GA+FVTPPGWWHSH NE D  A+VLP+QDAGL+T  RTLDIRF    +   +G
Sbjct:  234 AEHKNRLGVLLGNAKTEETTKTLTHTLWSLLNSIGPKSVQRPHRHNSVALDLAVHAEWPA-GRVYTLMGKEIDGNGDIIDPIKCVWATGAVFVTPPGWWHSHHNESDSTAWVLPMQDAGLYTHQRTLDIRFVDDELALHRG 373          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A6S8DNF9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8DNF9_9STRA)

HSP 1 Score: 185 bits (469), Expect = 9.670e-55
Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 1
Query:    1 AKHRNRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAP-ADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFAKGIVE-EKKG 417
            A+H+NRLGVLLGNAATE +T TLTHTLW+LLN + P T Q  HRHNS+ALDLA+ AP   G+VYT+MG  ID  G II PI+C W  G +FVTPPGWWHSH NE +  A+VLP+QDAGL+T  RTLDIRF    +E  KKG
Sbjct:  212 AQHKNRLGVLLGNAATENSTLTLTHTLWSLLNSIAPNTVQRPHRHNSVALDLAVSAPWPPGSVYTLMGKEIDSEGNIIHPIRCDWIPGGVFVTPPGWWHSHHNESNSIAWVLPMQDAGLYTFQRTLDIRFVDDELELHKKG 352          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A1Y1IBX7_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBX7_KLENI)

HSP 1 Score: 179 bits (455), Expect = 1.260e-52
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    1 AKHRNRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFAKGIVEEKK 414
            A HRNRLG+LLGNA T  +TKTLTHTLW+LLNVLP    Q  HRHNS+ALDLA+ A A G  YT+MGP +D++G+I++P++C W +G+MFVTPPGWWHSH NE   EA+VLP+QDAGL+T  RTLDIRF +  V   K
Sbjct:  248 AAHRNRLGILLGNAKT-ADTKTLTHTLWSLLNVLPAGDWQRPHRHNSVALDLAVHA-APGA-YTLMGPELDETGKIVNPVRCEWVTGSMFVTPPGWWHSHHNESPEEAWVLPMQDAGLYTHQRTLDIRFVEDEVRRLK 382          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A5A8DAT5_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DAT5_CAFRO)

HSP 1 Score: 178 bits (452), Expect = 1.660e-52
Identity = 86/137 (62.77%), Postives = 100/137 (72.99%), Query Frame = 1
Query:    1 AKHRNRLGVLLG-NAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFAKGIVEE 408
            A HRNRLG+LL   A     TKTLT TLWALLNVLP RT QP H+HNS+A+DLA+ AP  G  YT+M P +   GE++DP++  W SGA FVTPPGWWHSH NE D EA+VLP+QDAGLHT M+TLDI FA     E
Sbjct:  219 AAHRNRLGILLSCKAGWAERTKTLTPTLWALLNVLPGRTVQPPHKHNSVAIDLAVQAPEGGGAYTLMSPKLGPDGELVDPVRMEWRSGAAFVTPPGWWHSHHNETDEEAWVLPVQDAGLHTHMQTLDITFAARSAPE 355          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A7S0C7C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7C2_9STRA)

HSP 1 Score: 172 bits (436), Expect = 3.440e-52
Identity = 82/131 (62.60%), Postives = 97/131 (74.05%), Query Frame = 1
Query:   13 NRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFAKGIVE 405
            NRLGVLLGNA  E  TKTLTH LW+LLN +P +T Q  HRHNS+ALDLA+       VYT+MG  ID  G I+DPI+C W  G++FVTPPGWWHSH NE D+ A+VLP+QDAGL+T  RTLDIRF    +E
Sbjct:   43 NRLGVLLGNARCE-QTKTLTHVLWSLLNSIPAQTVQRPHRHNSVALDLAVSVQPGAMVYTLMGKEIDSMGFIVDPIRCDWEEGSVFVTPPGWWHSHHNESDFVAWVLPMQDAGLYTHQRTLDIRFVDDELE 172          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A7S1U2L0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2L0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.090e-51
Identity = 84/131 (64.12%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    1 AKHRNRLGVLLGNAATEGN-TKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFA 390
            A+HRNR+G+LLGN  TE   T TLTHTLW+LLNVLP    Q  HRHNS+ALDL +DA  +G VYT+MGP +++ G + DPI+C WT G +FVTPPGWWHSH NE D  A+VLP+QDAGL+T  RTLDIRF+
Sbjct:  236 AEHRNRMGILLGNDVTEAEGTLTLTHTLWSLLNVLPAGDAQRPHRHNSVALDLCVDASVEG-VYTLMGPELNEDGWVKDPIRCDWTPGGVFVTPPGWWHSHHNESDKPAWVLPIQDAGLYTHQRTLDIRFS 365          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: W7TWJ4_9STRA (Cupin, RmlC-type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWJ4_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.190e-51
Identity = 84/129 (65.12%), Postives = 98/129 (75.97%), Query Frame = 1
Query:    4 KHRNRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFA 390
            +HRNRLG+LLGN  TE NT TLTHTLW+LLN+LP    Q  HRHNS+ALDL + A   GT YT+MGP +D  G + DPI+  W SGA FVTPPGWWHSH N+ D +A+VLPLQDAGLHT MRTL I F+
Sbjct:  196 EHRNRLGILLGNRMTEANTLTLTHTLWSLLNLLPAGQKQRPHRHNSVALDLCVSAAPQGT-YTLMGPELDADGWVKDPIRLEWASGACFVTPPGWWHSHHNDTDQDAWVLPLQDAGLHTHMRTLKIEFS 323          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A7S4D8C1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8C1_HETAK)

HSP 1 Score: 174 bits (441), Expect = 6.200e-51
Identity = 78/129 (60.47%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    4 KHRNRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFA 390
            +HRNRLG+LLGN ATE  TKTLTH LW+LLN +PP T Q  HRHNS+ALD  + APA G VYT+MGP +D+ G + DP++  W +G  F TPPGWWHSH NE    A+VLP+QDAGL T    LDI+F+
Sbjct:  218 EHRNRLGILLGNKATEDGTKTLTHVLWSLLNTIPPNTDQRPHRHNSVALDFCVSAPAGGKVYTLMGPELDEEGWVKDPVRMDWVTGGAFTTPPGWWHSHHNESSEAAWVLPVQDAGLLTHQGVLDIQFS 346          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A7R9UEK6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEK6_9STRA)

HSP 1 Score: 175 bits (443), Expect = 8.160e-51
Identity = 83/139 (59.71%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    1 AKHRNRLGVLLGNAATEGN-TKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFAKGIVEEKK 414
            A+HRNR+G+LLG+  TE   TKTLTHTLW+LLNVLP    Q  HRHNS+ALDL ++A   G VYT+MG  +D+ G + +PI+C WT+G +FVTPPGWWHSH N+ D  A+VLP+QDAGL+T  RTLDIRF+  + +EK+
Sbjct:  244 AEHRNRMGILLGSDVTEQEGTKTLTHTLWSLLNVLPAGDAQRPHRHNSVALDLCVNA-VPGKVYTLMGKELDEDGWVKNPIRCDWTTGGVFVTPPGWWHSHHNDSDEPAWVLPMQDAGLYTHQRTLDIRFSPPLKKEKE 381          
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Match: A0A7S4EBK0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBK0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.200e-50
Identity = 82/130 (63.08%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    4 KHRNRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIALDLAIDAP-ADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSHVNEGDYEAFVLPLQDAGLHTAMRTLDIRFA 390
            +H NRLGVLLGNA+TE  TKTLTH +W+LLN + P T Q  HRHNS+ALD+A+ AP   G VYT+MG  +D +G ++DPI+  W  G++FVTPPGWWHSH NE D  A+VLP+QDAGL+T  RTLDIRFA
Sbjct:  310 EHANRLGVLLGNASTEKTTKTLTHVMWSLLNSIGPHTVQKPHRHNSVALDMAVAAPWPHGKVYTLMGRELDANGNVVDPIRVDWADGSVFVTPPGWWHSHHNESDATAWVLPIQDAGLYTHQRTLDIRFA 439          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102032.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0Y298_AURAN1.120e-5565.25Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6S8DNF9_9STRA9.670e-5564.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Y1IBX7_KLENI1.260e-5263.77Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A5A8DAT5_CAFRO1.660e-5262.77Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S0C7C2_9STRA3.440e-5262.60Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1U2L0_9STRA1.090e-5164.12Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7TWJ4_9STRA1.190e-5165.12Cupin, RmlC-type n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A7S4D8C1_HETAK6.200e-5160.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9UEK6_9STRA8.160e-5159.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4EBK0_9STRA1.200e-5063.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102032contigM-pyrifera_M_contig102032:7..429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue4.8e-46
Seed eggNOG ortholog44056.XP_009034659.1
Hectar predicted targeting categoryother localisation
EggNOG OGs29JDT@1,2RSN5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.2240875-CDS-M-pyrifera_M_contig102032:6..4291622815521.2240875-CDS-M-pyrifera_M_contig102032:6..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102032 7..429 +
1692277448.0139556-CDS-M-pyrifera_M_contig102032:6..4291692277448.0139556-CDS-M-pyrifera_M_contig102032:6..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102032 7..429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102032.442.1prot_M-pyrifera_M_contig102032.442.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102032 7..429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102032.442.1

>prot_M-pyrifera_M_contig102032.442.1 ID=prot_M-pyrifera_M_contig102032.442.1|Name=mRNA_M-pyrifera_M_contig102032.442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
AKHRNRLGVLLGNAATEGNTKTLTHTLWALLNVLPPRTTQPAHRHNSIAL
DLAIDAPADGTVYTIMGPGIDDSGEIIDPIKCTWTSGAMFVTPPGWWHSH
VNEGDYEAFVLPLQDAGLHTAMRTLDIRFAKGIVEEKKGD*
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mRNA from alignment at M-pyrifera_M_contig102032:7..429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102032.442.1 ID=mRNA_M-pyrifera_M_contig102032.442.1|Name=mRNA_M-pyrifera_M_contig102032.442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig102032:7..429+ (Macrocystis pyrifera P11B4 male)
GCAAAGCATCGAAATCGACTTGGAGTCTTGTTGGGGAATGCTGCAACAGA AGGGAACACAAAAACTCTCACACATACTCTATGGGCGTTGCTCAACGTAC TCCCACCTCGCACCACACAGCCTGCACATCGCCACAATTCCATTGCCCTT GATTTAGCGATCGATGCCCCTGCTGATGGTACTGTGTACACCATCATGGG ACCCGGGATAGATGACAGTGGTGAAATCATTGACCCCATCAAATGCACTT GGACATCAGGTGCTATGTTTGTCACACCACCAGGATGGTGGCATTCCCAC GTCAATGAAGGGGACTATGAAGCGTTCGTCCTCCCTCTGCAAGATGCTGG GCTGCACACTGCCATGAGAACGCTAGATATCAGGTTTGCGAAAGGAATTG TGGAGGAGAAGAAGGGGGATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102032:7..429+

>mRNA_M-pyrifera_M_contig102032.442.1 ID=mRNA_M-pyrifera_M_contig102032.442.1|Name=mRNA_M-pyrifera_M_contig102032.442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig102032:7..429+ (Macrocystis pyrifera P11B4 male)
GCAAAGCATCGAAATCGACTTGGAGTCTTGTTGGGGAATGCTGCAACAGA
AGGGAACACAAAAACTCTCACACATACTCTATGGGCGTTGCTCAACGTAC
TCCCACCTCGCACCACACAGCCTGCACATCGCCACAATTCCATTGCCCTT
GATTTAGCGATCGATGCCCCTGCTGATGGTACTGTGTACACCATCATGGG
ACCCGGGATAGATGACAGTGGTGAAATCATTGACCCCATCAAATGCACTT
GGACATCAGGTGCTATGTTTGTCACACCACCAGGATGGTGGCATTCCCAC
GTCAATGAAGGGGACTATGAAGCGTTCGTCCTCCCTCTGCAAGATGCTGG
GCTGCACACTGCCATGAGAACGCTAGATATCAGGTTTGCGAAAGGAATTG
TGGAGGAGAAGAAGGGGGATTGAGCAAAGCATCGAAATCGACTTGGAGTC
TTGTTGGGGAATGCTGCAACAGAAGGGAACACAAAAACTCTCACACATAC
TCTATGGGCGTTGCTCAACGTACTCCCACCTCGCACCACACAGCCTGCAC
ATCGCCACAATTCCATTGCCCTTGATTTAGCGATCGATGCCCCTGCTGAT
GGTACTGTGTACACCATCATGGGACCCGGGATAGATGACAGTGGTGAAAT
CATTGACCCCATCAAATGCACTTGGACATCAGGTGCTATGTTTGTCACAC
CACCAGGATGGTGGCATTCCCACGTCAATGAAGGGGACTATGAAGCGTTC
GTCCTCCCTCTGCAAGATGCTGGGCTGCACACTGCCATGAGAACGCTAGA
TATCAGGTTTGCGAAAGGAATTGTGGAGGAGAAGAAGGGGGATTGA
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