mRNA_M-pyrifera_M_contig102016.438.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102016.438.1
Unique NamemRNA_M-pyrifera_M_contig102016.438.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A642USZ0_DIURU (NAD(P)H-hydrate epimerase n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642USZ0_DIURU)

HSP 1 Score: 124 bits (310), Expect = 6.780e-33
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVA--KMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKI 333
            +VDALFGFSFK P+REPF  ++   K A  KA + S+DVPSGWDV++GP    +E    P +L+SL+APKPC+  +HG H+LGGRF+ P++A+KYGI+T+ + Y G  Q+ ++
Sbjct:  123 IVDALFGFSFKPPLREPFGEVLTALKAAREKAIICSIDVPSGWDVDNGPI--DEEINFDPQMLVSLSAPKPCSLRYHGYHWLGGRFISPEIAKKYGIETVTSRYRGCDQVVRL 233
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A836CPB5_9STRA (NAD(P)H-hydrate epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPB5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.370e-30
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSK-DEPTLTPTVLISLTAPKPCTTAFHGTH-YLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKI 333
            ++D +FGFSF G +R PF S++A M      + SVD+PSGWDVN+G T+S  D P++ P VLISLTAPKPC+  F G H +LGGRF+ PKLA+KYG+  L   Y G++Q  ++
Sbjct:  160 ILDCIFGFSFSGAVRPPFDSVIAAMVQSGVPIASVDIPSGWDVNEGSTSSTGDTPSIEPDVLISLTAPKPCSRLFKGRHHFLGGRFLTPKLAQKYGLTWLPR-YPGTEQCVEV 271
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A0B1P5V7_UNCNE (NAD(P)H-hydrate epimerase n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1P5V7_UNCNE)

HSP 1 Score: 117 bits (293), Expect = 2.540e-30
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKI 333
            ++DA+FGFSF G +REPFR ++A +   K  V+SVDVPS WD+  GP ++       P VL+SL+APKP  + F G H+LGGRFVPPK  EKYG++     Y G  QI +I
Sbjct:  123 IIDAIFGFSFSGEIREPFRGVIAALEKTKLPVLSVDVPSSWDIEKGPPSTGLGSNFNPAVLVSLSAPKPSASFFRGKHFLGGRFVPPKFQEKYGLEKYE--YPGDSQILEI 231
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A420HL79_9PEZI (NAD(P)H-hydrate epimerase n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420HL79_9PEZI)

HSP 1 Score: 117 bits (292), Expect = 3.670e-30
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKI 333
            V+DA+FGFSF G +REPF++++  +      V+SVDVPS WDV  GP  S       PTVL+SL+APKP  + F G H+LGGRFVPPK  EKYG++     Y G  QI +I
Sbjct:  123 VIDAIFGFSFSGEIREPFQAVITALEKTTLPVISVDVPSSWDVEKGPPLSGPGSNFNPTVLVSLSAPKPLASFFKGRHFLGGRFVPPKFQEKYGLEKYE--YIGGSQILEI 231
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A0D2VTR8_CAPO3 (NAD(P)H-hydrate epimerase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VTR8_CAPO3)

HSP 1 Score: 117 bits (293), Expect = 4.450e-30
Identity = 62/113 (54.87%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGT-HYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKIN 336
            V+DA+FGF FKG  R PF +L+  M    A V SVDVPSGWDV  GP  SK+   L P VL+SLTAPKPC   F G  HYLGGRFVPP +AE+Y ++     Y GS+QI  ++
Sbjct:  149 VIDAVFGFGFKGEPRAPFDALLTSMIRSGARVCSVDVPSGWDVEAGPDESKEYAKLQPDVLVSLTAPKPCAVHFRGRQHYLGGRFVPPGIAERYHLRLPE--YPGSEQIILLD 259
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A0E9NP06_SAICN (NAD(P)H-hydrate epimerase n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NP06_SAICN)

HSP 1 Score: 116 bits (291), Expect = 8.080e-30
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKINATAKEE 354
            +VDA+FGFSF G +REPF ++++ +   K  V+SVD PS W +++GP TS       P  LISLTAPKPC   F G H+LGGRFVPP + EK+G+  +   Y G++Q+ +I     E+
Sbjct:  139 IVDAIFGFSFSGEIREPFPNIISALKSTKTPVLSVDAPSSWTIDNGPPTSGPGEGFMPNALISLTAPKPCVEWFQGRHFLGGRFVPPGIVEKFGL--VLPEYPGAEQVVEITGEKMEK 254
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A0J8QQY8_COCIT (Meiotically up-regulated gene 182 protein n=1 Tax=Coccidioides immitis RMSCC 3703 TaxID=454286 RepID=A0A0J8QQY8_COCIT)

HSP 1 Score: 112 bits (280), Expect = 1.760e-29
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKINATAKEE 354
            +VDA+FGFSF GP+REP+ ++++++   K  VVSVD PS WD+  GP          P VL+SLTAPKPC   F G H++GGRF+    AEKYG+      Y G  Q+ +I+    E+
Sbjct:   22 IVDAIFGFSFGGPLREPYPAIISQIESAKVPVVSVDAPSSWDIETGPPKDGPGARFMPEVLVSLTAPKPCVKFFRGRHFIGGRFLTKATAEKYGLDVPD--YPGIDQVMEIDVEGSEK 137
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A5J5EYL5_9PEZI (NAD(P)H-hydrate epimerase n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EYL5_9PEZI)

HSP 1 Score: 115 bits (289), Expect = 2.900e-29
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKI 333
            VVDA+FGFSF+ P+REPF +++A +   K  V SVD PSGWDV+ GP          P  L+SLTAPKP    F G H+LGGRFV PK+AEKYG +     Y G  Q+ +I
Sbjct:  160 VVDAIFGFSFRPPIREPFPAVIAALVASKVPVTSVDAPSGWDVDAGPPAEGPAKDFHPAALVSLTAPKPLVKFFKGRHFLGGRFVAPKIAEKYGFEVPE--YPGIDQVVEI 268
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: A0A1I8CFN3_9BILA (NAD(P)H-hydrate epimerase n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8CFN3_9BILA)

HSP 1 Score: 114 bits (285), Expect = 3.070e-29
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKI 333
            +VDA+FGFSF+ P+REPF  ++ K++  K  ++S+D+PSGWDV  GP  S    T+ P  L+SLTAPK C   F GTHY+GGRFVP  + +KY +      Y GS+QI K+
Sbjct:  118 IVDAIFGFSFQPPLREPFGDILEKLSKTKTPIMSIDIPSGWDVEKGPENSLS--TIYPDTLVSLTAPKRCAMHFKGTHYVGGRFVPDSIIKKYKLDL--PKYVGSEQIIKL 224
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BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Match: G8YDM7_PICSO (NAD(P)H-hydrate epimerase n=2 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8YDM7_PICSO)

HSP 1 Score: 114 bits (285), Expect = 5.060e-29
Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 VVDALFGFSFKGPMREPFRSLVAKMA---GGKAEVVSVDVPSGWDVNDGPTTSKDEPTLTPTVLISLTAPKPCTTAFH---GTHYLGGRFVPPKLAEKYGIQTLATLYTGSQQIAKI 333
            +VD+LFGFSFK P+R PF  L+  ++   G  A VVSVD+PSGWDV+ GP     E  + P++LISLTAPKPC   F    G HYLGGRF+ PKLAEKY I  + +LY     + K+
Sbjct:  133 IVDSLFGFSFKPPVRAPFDDLLKFLSENHGNIAPVVSVDIPSGWDVDSGPL----EYDIKPSMLISLTAPKPCAAKFASEGGAHYLGGRFISPKLAEKYNISDITSLYKKDNLVVKL 245
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102016.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A642USZ0_DIURU6.780e-3351.33NAD(P)H-hydrate epimerase n=1 Tax=Diutina rugosa T... [more]
A0A836CPB5_9STRA2.370e-3052.21NAD(P)H-hydrate epimerase n=1 Tax=Tribonema minus ... [more]
A0A0B1P5V7_UNCNE2.540e-3050.45NAD(P)H-hydrate epimerase n=1 Tax=Uncinula necator... [more]
A0A420HL79_9PEZI3.670e-3051.35NAD(P)H-hydrate epimerase n=1 Tax=Erysiphe neolyco... [more]
A0A0D2VTR8_CAPO34.450e-3054.87NAD(P)H-hydrate epimerase n=2 Tax=Capsaspora owcza... [more]
A0A0E9NP06_SAICN8.080e-3046.61NAD(P)H-hydrate epimerase n=2 Tax=Saitoella compli... [more]
A0A0J8QQY8_COCIT1.760e-2944.92Meiotically up-regulated gene 182 protein n=1 Tax=... [more]
A0A5J5EYL5_9PEZI2.900e-2951.35NAD(P)H-hydrate epimerase n=1 Tax=Sphaerosporella ... [more]
A0A1I8CFN3_9BILA3.070e-2949.55NAD(P)H-hydrate epimerase n=1 Tax=Rhabditophanes s... [more]
G8YDM7_PICSO5.060e-2952.14NAD(P)H-hydrate epimerase n=2 Tax=Pichia sorbitoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102016contigM-pyrifera_M_contig102016:1..360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score117.1
Seed ortholog evalue5.7e-24
Seed eggNOG ortholog192875.XP_004346980.1
Preferred nameAPOA1BP
KEGG koko:K17759
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016043,GO:0016853,GO:0016854,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0022607,GO:0031974,GO:0031981,GO:0034356,GO:0034641,GO:0034654,GO:0042802,GO:0042803,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044297,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046496,GO:0046983,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0052856,GO:0052857,GO:0055086,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0120025,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX
EggNOG OGs38ZZ7@33154,COG0062@1,KOG2585@2759
EC5.1.99.6
COG Functional cat.E
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.0574293-CDS-M-pyrifera_M_contig102016:0..3601622815521.0574293-CDS-M-pyrifera_M_contig102016:0..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102016 1..360 +
1692277447.963784-CDS-M-pyrifera_M_contig102016:0..3601692277447.963784-CDS-M-pyrifera_M_contig102016:0..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102016 1..360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102016.438.1prot_M-pyrifera_M_contig102016.438.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102016 1..360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102016.438.1

>prot_M-pyrifera_M_contig102016.438.1 ID=prot_M-pyrifera_M_contig102016.438.1|Name=mRNA_M-pyrifera_M_contig102016.438.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
VVDALFGFSFKGPMREPFRSLVAKMAGGKAEVVSVDVPSGWDVNDGPTTS
KDEPTLTPTVLISLTAPKPCTTAFHGTHYLGGRFVPPKLAEKYGIQTLAT
LYTGSQQIAKINATAKEEK*
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mRNA from alignment at M-pyrifera_M_contig102016:1..360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102016.438.1 ID=mRNA_M-pyrifera_M_contig102016.438.1|Name=mRNA_M-pyrifera_M_contig102016.438.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig102016:1..360+ (Macrocystis pyrifera P11B4 male)
GTTGTGGATGCATTGTTTGGGTTTTCGTTCAAAGGTCCAATGCGTGAACC
TTTTCGTTCGTTGGTGGCGAAGATGGCAGGTGGAAAAGCAGAGGTGGTGA
GTGTGGATGTTCCATCGGGTTGGGATGTGAATGATGGTCCCACAACATCA
AAAGACGAACCAACCCTCACCCCGACCGTCCTCATCTCCCTCACTGCCCC
AAAGCCATGCACCACAGCATTCCACGGCACACACTACCTCGGGGGAAGAT
TCGTTCCCCCAAAACTAGCAGAAAAATACGGAATCCAAACCCTCGCCACC
TTGTACACCGGATCCCAACAAATCGCCAAAATCAATGCCACCGCAAAAGA
GGAGAAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102016:1..360+

>mRNA_M-pyrifera_M_contig102016.438.1 ID=mRNA_M-pyrifera_M_contig102016.438.1|Name=mRNA_M-pyrifera_M_contig102016.438.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig102016:1..360+ (Macrocystis pyrifera P11B4 male)
GTTGTGGATGCATTGTTTGGGTTTTCGTTCAAAGGTCCAATGCGTGAACC
TTTTCGTTCGTTGGTGGCGAAGATGGCAGGTGGAAAAGCAGAGGTGGTGA
GTGTGGATGTTCCATCGGGTTGGGATGTGAATGATGGTCCCACAACATCA
AAAGACGAACCAACCCTCACCCCGACCGTCCTCATCTCCCTCACTGCCCC
AAAGCCATGCACCACAGCATTCCACGGCACACACTACCTCGGGGGAAGAT
TCGTTCCCCCAAAACTAGCAGAAAAATACGGAATCCAAACCCTCGCCACC
TTGTACACCGGATCCCAACAAATCGCCAAAATCAATGCCACCGCAAAAGA
GGAGAAATGAGTTGTGGATGCATTGTTTGGGTTTTCGTTCAAAGGTCCAA
TGCGTGAACCTTTTCGTTCGTTGGTGGCGAAGATGGCAGGTGGAAAAGCA
GAGGTGGTGAGTGTGGATGTTCCATCGGGTTGGGATGTGAATGATGGTCC
CACAACATCAAAAGACGAACCAACCCTCACCCCGACCGTCCTCATCTCCC
TCACTGCCCCAAAGCCATGCACCACAGCATTCCACGGCACACACTACCTC
GGGGGAAGATTCGTTCCCCCAAAACTAGCAGAAAAATACGGAATCCAAAC
CCTCGCCACCTTGTACACCGGATCCCAACAAATCGCCAAAATCAATGCCA
CCGCAAAAGAGGAGAAATGA
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