mRNA_M-pyrifera_M_contig102012.437.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102012.437.1
Unique NamemRNA_M-pyrifera_M_contig102012.437.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A7K2AVK2_9ACTN (DUF4202 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2AVK2_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 1.970e-18
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   22 RATQIVQKKELGSDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIA--LDERS 243
            RATQIV K+ LGSDPEVQ FEDAV LTF+ET+ R   D+L DD K  D+VAKTL KMS  G + A  +A  L ERS
Sbjct:   70 RATQIVTKRGLGSDPEVQTFEDAVSLTFLETELRPVLDRLDDDTKAADIVAKTLAKMSAAGREQAAQVAATLGERS 145          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A7K2D985_9ACTN (DUF4202 domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2D985_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 3.370e-18
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   22 RATQIVQKKELGSDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIA--LDERS 243
            RATQIV K+ LGSDPEVQ FEDAV LTF+ET+ R   D+L DD K  D+VAKTL KMS  G + A  +A  LDE S
Sbjct:  110 RATQIVTKRGLGSDPEVQTFEDAVSLTFLETELRPVLDRLDDDTKAADIVAKTLAKMSAAGREQAAGVAARLDEHS 185          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A6B1AWL3_9ACTN (DUF4202 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AWL3_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 3.320e-17
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   22 RATQIVQKKELGSDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIA--LDERSAGIVGRA 264
            RA ++V KK LGSDPEVQ FEDAV L F+ET+     D+L DD K+ D+VAKTL KMS  G + A  +A  LDERS  IV  A
Sbjct:  125 RAAEVVTKKGLGSDPEVQTFEDAVSLAFLETELLPVVDRLEDDSKVTDIVAKTLAKMSAAGREQAQELAAVLDERSRMIVAEA 207          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A6L7WCI4_9CHLR (DUF4202 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7WCI4_9CHLR)

HSP 1 Score: 81.3 bits (199), Expect = 6.450e-17
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   16 LQRATQIVQKKELG-----SDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIALDERSAGIVGRAA 267
            + R  QIV K+ L      +DP+VQ FEDA+ L F+ETQF   T++L DDEKM  +VA+TLRKMS RG +AA  +A DER+  I+ RAA
Sbjct:  122 IDRVRQIVLKQGLTRDRETTDPDVQAFEDALSLVFLETQFAELTERLDDDEKMARIVARTLRKMSTRGREAARDLAYDERARAILDRAA 210          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A6B0W9L2_9CHLR (DUF4202 domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0W9L2_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 9.010e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   58 SDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIALDERSAGIVGRAA 267
            +DP+VQ FEDA+ L F+ETQF   T++L DDEKM   VA+TLRKMS RG +AA  +A DER+  I+ RAA
Sbjct:    8 TDPDVQAFEDALSLVFLETQFAELTERLDDDEKMARSVARTLRKMSTRGREAARDLAYDERARAILDRAA 77          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A6B1EFV0_9ACTN (DUF4202 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EFV0_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 2.110e-15
Identity = 48/89 (53.93%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   22 RATQIVQKKELGSDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIALD----ERSAGIVGRAAATL 276
            RA  IV KK LGSDPEVQ FEDAV LTF+ETQ      +LADD K   +VAKTL KMS+ G   A  +A      +RS  I+  A ATL
Sbjct:  111 RAAAIVSKKGLGSDPEVQTFEDAVSLTFLETQLEPVIARLADDAKAASIVAKTLAKMSDAGRGQAQALAASGQFGDRSRRILTEAMATL 199          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A523K273_9DELT (DUF4202 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523K273_9DELT)

HSP 1 Score: 76.6 bits (187), Expect = 2.450e-15
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   22 RATQIVQKKELGSDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIALDERSAGIVGRAAATL 276
            R   I++K+ LG D EVQ  EDA+CL F+ETQ      K   DEK+VD++ K+L+KMSERG +AAG IAL     G++ RA A L
Sbjct:  104 RVGDIIRKRGLGRDAEVQTLEDALCLVFVETQLGDFATK-HPDEKVVDILMKSLKKMSERGREAAGAIALSAAERGLLARAVAAL 187          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A6L7PF52_9CHLR (DUF4202 domain-containing protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7PF52_9CHLR)

HSP 1 Score: 76.6 bits (187), Expect = 3.830e-15
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   22 RATQIVQKKELG-----SDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIALDERSAGIVGRAA 267
            R  QIV K+ L      +DPEVQ FED + L F+ETQF   + +L DDEKM  ++A+TLRKMS RG +AA  +A DERS  I+ +AA
Sbjct:  124 RVRQIVLKQGLTRDPETTDPEVQTFEDGLSLVFLETQFAELSARLDDDEKMARIIARTLRKMSARGREAARDLAYDERSGAILEQAA 210          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A6I3C7X5_9ACTN (DUF4202 family protein n=2 Tax=root TaxID=1 RepID=A0A6I3C7X5_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 3.230e-13
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 VSPDDLQRATQIVQKKELGSDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIALDERSAGIVGRAAA 270
            +  D ++RA Q+V K+     PE Q FED VCL F++TQF A  D+L D++K +DV+ KTL KMS   +  AG+  L  R   ++GRAAA
Sbjct:  122 IGADVVERAQQLVAKRGDQRAPEAQAFEDVVCLVFLDTQFEALIDRL-DEQKTIDVLRKTLPKMSAAAVALAGSAELHPRGRELLGRAAA 210          
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Match: A0A534Q6U5_9DELT (DUF4202 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Q6U5_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 3.310e-13
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   16 LQRATQIVQKKELG-SDPEVQLFEDAVCLTFIETQFRATTDKLADDEKMVDVVAKTLRKMSERGIDAAGTIALDERSAGIVGRAAA 270
            ++R + ++ K+ L   D EVQ+ EDA+CL F+ETQ+R   ++LA+D K++DV AKTLRKMSER    A  + LD R   ++ RAAA
Sbjct:  111 IRRVSDLLHKRGLARGDAEVQVLEDALCLVFLETQYREIAERLAED-KLLDVTAKTLRKMSERAKMLALELPLDARDLALIRRAAA 195          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102012.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K2AVK2_9ACTN1.970e-1861.84DUF4202 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7K2D985_9ACTN3.370e-1861.84DUF4202 domain-containing protein n=5 Tax=Acidimic... [more]
A0A6B1AWL3_9ACTN3.320e-1756.63DUF4202 domain-containing protein n=1 Tax=Acidimic... [more]
A0A6L7WCI4_9CHLR6.450e-1752.81DUF4202 domain-containing protein n=1 Tax=Chlorofl... [more]
A0A6B0W9L2_9CHLR9.010e-1758.57DUF4202 domain-containing protein (Fragment) n=1 T... [more]
A0A6B1EFV0_9ACTN2.110e-1553.93DUF4202 domain-containing protein n=2 Tax=Acidimic... [more]
A0A523K273_9DELT2.450e-1550.59DUF4202 domain-containing protein n=1 Tax=Deltapro... [more]
A0A6L7PF52_9CHLR3.830e-1551.72DUF4202 domain-containing protein n=2 Tax=Chlorofl... [more]
A0A6I3C7X5_9ACTN3.230e-1345.56DUF4202 family protein n=2 Tax=root TaxID=1 RepID=... [more]
A0A534Q6U5_9DELT3.310e-1347.67DUF4202 domain-containing protein n=1 Tax=Deltapro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102012contigM-pyrifera_M_contig102012:382..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.2
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog101852.XP_008082833.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutamyl-tRNA synthetase
EggNOG OGs2B68M@1,2S0KS@2759,3A1AB@33154,3P1YV@4751,3QUIB@4890
COG Functional cat.J
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.0169163-CDS-M-pyrifera_M_contig102012:381..6631622815521.0169163-CDS-M-pyrifera_M_contig102012:381..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102012 382..663 -
1692277447.9516692-CDS-M-pyrifera_M_contig102012:381..6631692277447.9516692-CDS-M-pyrifera_M_contig102012:381..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102012 382..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102012.437.1prot_M-pyrifera_M_contig102012.437.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102012 382..663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102012.437.1

>prot_M-pyrifera_M_contig102012.437.1 ID=prot_M-pyrifera_M_contig102012.437.1|Name=mRNA_M-pyrifera_M_contig102012.437.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
VSPDDLQRATQIVQKKELGSDPEVQLFEDAVCLTFIETQFRATTDKLADD
EKMVDVVAKTLRKMSERGIDAAGTIALDERSAGIVGRAAATLA*
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mRNA from alignment at M-pyrifera_M_contig102012:382..663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102012.437.1 ID=mRNA_M-pyrifera_M_contig102012.437.1|Name=mRNA_M-pyrifera_M_contig102012.437.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig102012:382..663- (Macrocystis pyrifera P11B4 male)
GTGTCGCCCGACGACCTGCAGCGGGCGACCCAGATCGTGCAGAAGAAGGA GCTCGGATCCGACCCCGAGGTCCAACTTTTCGAGGACGCGGTGTGCCTCA CCTTCATCGAGACCCAGTTCCGCGCCACGACCGACAAGCTGGCCGACGAC GAGAAGATGGTCGACGTCGTGGCGAAGACCCTGCGCAAGATGAGCGAGCG CGGAATCGACGCCGCGGGCACGATCGCACTCGACGAACGGTCGGCCGGCA TCGTCGGCCGAGCCGCAGCAACGCTGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102012:382..663-

>mRNA_M-pyrifera_M_contig102012.437.1 ID=mRNA_M-pyrifera_M_contig102012.437.1|Name=mRNA_M-pyrifera_M_contig102012.437.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig102012:382..663- (Macrocystis pyrifera P11B4 male)
GTGTCGCCCGACGACCTGCAGCGGGCGACCCAGATCGTGCAGAAGAAGGA
GCTCGGATCCGACCCCGAGGTCCAACTTTTCGAGGACGCGGTGTGCCTCA
CCTTCATCGAGACCCAGTTCCGCGCCACGACCGACAAGCTGGCCGACGAC
GAGAAGATGGTCGACGTCGTGGCGAAGACCCTGCGCAAGATGAGCGAGCG
CGGAATCGACGCCGCGGGCACGATCGCACTCGACGAACGGTCGGCCGGCA
TCGTCGGCCGAGCCGCAGCAACGCTGGCCTGAGTGTCGCCCGACGACCTG
CAGCGGGCGACCCAGATCGTGCAGAAGAAGGAGCTCGGATCCGACCCCGA
GGTCCAACTTTTCGAGGACGCGGTGTGCCTCACCTTCATCGAGACCCAGT
TCCGCGCCACGACCGACAAGCTGGCCGACGACGAGAAGATGGTCGACGTC
GTGGCGAAGACCCTGCGCAAGATGAGCGAGCGCGGAATCGACGCCGCGGG
CACGATCGCACTCGACGAACGGTCGGCCGGCATCGTCGGCCGAGCCGCAG
CAACGCTGGCCTGA
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