mRNA_M-pyrifera_M_contig101999.432.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101999.432.1
Unique NamemRNA_M-pyrifera_M_contig101999.432.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101999.432.1 vs. uniprot
Match: A0A7S1PI02_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1PI02_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 5.140e-16
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1 
Query:    4 ALEAAKELQLTTGGWAPAGYHTTAGPDLALKA-FGLREVHGGSLARRYVTRSIRNVDDTDGTLVVRLRPGRGTDKTLGYCWTGKW---QLPPKALPAIPFRPVLAVKALDDD--ALGQVEDFLLRFGIKRLNVAGHRDLDPARAWQKQVQAFLQSAFA 459
            ALEAA +L++ TGG+APA + T  G +  L+  + L  ++       Y  R+  NVD++DGT+  R    RGTDKT+GY  T KW   ++         ++PV  V  + D+  A   + +F+    +K LNVAGHR+   ++    +V+  L+SA A
Sbjct:   56 ALEAAYDLKIATGGFAPANFRTEKGSNSELQTKYNLVAINSSD----YTKRTRMNVDNSDGTIAFRFHKSRGTDKTIGYAQTKKWTDGKIKSMNRTETQYKPVCVVTQVQDEKEAAQCIREFIQTNRLKVLNVAGHRE-SQSKDLSGRVKRILKSALA 208
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BLAST of mRNA_M-pyrifera_M_contig101999.432.1 vs. uniprot
Match: UPI0005911BB3 (putative molybdenum carrier protein n=1 Tax=Halomonas salina TaxID=42565 RepID=UPI0005911BB3)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-6
Identity = 53/150 (35.33%), Postives = 70/150 (46.67%), Query Frame = 1 
Query:    4 ALEAAKELQLTTGGWAPAGYHTTAGPDLALKAFGLREVHGGSLARRYVTRSIRNVDDTDGTLVVRLRPGRG-TDKTLGYCWTGKWQLPPKALPAIPFRPVLAVKALDDDALGQVEDFLLRFGIKRLNVAG------HRDLDPARAWQKQV 432
            AL+AA E     GGW P G    AG  +    + L E+  G     Y  R I+NV D+DGTL++     +G T+ TL  C   K Q P + + A+   P  A +         ++DFL R+ I RLNVAG      HR  D  R   K V
Sbjct:   18 ALDAALEAGFPCGGWCPPGRE--AGDGVIPDGYPLTEMAQGG----YRQRMIQNVLDSDGTLILYFGELKGGTEATLVQCI--KRQRPYRLIDAVEVPPSRAARL--------IQDFLGRYAIARLNVAGPSHRREHRGADYTRQVIKDV 151
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BLAST of mRNA_M-pyrifera_M_contig101999.432.1 vs. uniprot
Match: A0A6N4E0F3_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Sedimenticola endophacoides TaxID=2548426 RepID=A0A6N4E0F3_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-5
Identity = 48/144 (33.33%), Postives = 68/144 (47.22%), Query Frame = 1 
Query:    1 AALEAAKELQLTTGGWAPAGYHTTAGPDLALKAFGLREVHGGSLARRYVTRSIRNVDDTDGTLVVRLRP-GRGTDKTLGYCWTGKWQLPPKALPAIPFRPVLAV---KALDDDALGQVEDFLLRFGIKRLNVAGHRDLDPARAW 420
            AAL+AA  L L  GGW P G     GP      + LRE+ G      Y  R++RNV D+DGTL+V       GT+  L +C   K             RP + +   +  ++ A  ++  F+ + GI+ LNVAG R     RA+
Sbjct:   17 AALDAALTLGLEAGGWCPRGRLAEDGP--IPDHYPLREMPGPG----YRQRTLRNVIDSDGTLIVYFGYLSGGTELALSFCVQRK-------------RPYVLIDGDELSEERAAQKIGRFIRQRGIRVLNVAGPRASGEPRAY 141
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BLAST of mRNA_M-pyrifera_M_contig101999.432.1 vs. uniprot
Match: A0A420FCK7_9BURK (Uncharacterized protein n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A420FCK7_9BURK)

HSP 1 Score: 51.2 bits (121), Expect = 4.730e-5
Identity = 47/147 (31.97%), Postives = 68/147 (46.26%), Query Frame = 1 
Query:    4 ALEAAKELQLTTGGWAPAGYHTTAGPDLALKAFGLREVHGGSLARRYVTRSIRNVDDTDGTLVVRLRP-GRGTDKTLGYCWT-GKWQLPPKALPAIPFRPVLAVKALDDDALGQVEDFLLRFGIKRLNVAGHRDLDPARAWQKQVQA 438
            AL+AA E+Q   GGW PAG     GP      + L E+        Y  R+++N+ DTDGT+V+       GT +T  +C   GK           P + + A   L   A  ++  F+ R+ I+ LNVAG R     +A Q   +A
Sbjct:   20 ALDAALEMQFPCGGWCPAGRLAEDGP--IPDRYPLTELPNAG----YEERTLQNLLDTDGTVVIHFGSLSGGTLETCEWCVARGK-----------PVKIIDAATTLQAAAAEEIGRFVERYNIETLNVAGPRASKAPQAQQYAREA 149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101999.432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1PI02_9EUKA5.140e-1634.81Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
UPI0005911BB31.190e-635.33putative molybdenum carrier protein n=1 Tax=Halomo... [more]
A0A6N4E0F3_9GAMM2.140e-533.33Uncharacterized protein n=1 Tax=Candidatus Sedimen... [more]
A0A420FCK7_9BURK4.730e-531.97Uncharacterized protein n=2 Tax=Paraburkholderia T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101999contigM-pyrifera_M_contig101999:3..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.6875265-CDS-M-pyrifera_M_contig101999:2..4791622815520.6875265-CDS-M-pyrifera_M_contig101999:2..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101999 3..479 +
1692277447.7724884-CDS-M-pyrifera_M_contig101999:2..4791692277447.7724884-CDS-M-pyrifera_M_contig101999:2..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101999 3..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101999.432.1prot_M-pyrifera_M_contig101999.432.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101999 3..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101999.432.1

>prot_M-pyrifera_M_contig101999.432.1 ID=prot_M-pyrifera_M_contig101999.432.1|Name=mRNA_M-pyrifera_M_contig101999.432.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
AALEAAKELQLTTGGWAPAGYHTTAGPDLALKAFGLREVHGGSLARRYVT
RSIRNVDDTDGTLVVRLRPGRGTDKTLGYCWTGKWQLPPKALPAIPFRPV
LAVKALDDDALGQVEDFLLRFGIKRLNVAGHRDLDPARAWQKQVQAFLQS
AFAQALHK*
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mRNA from alignment at M-pyrifera_M_contig101999:3..479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101999.432.1 ID=mRNA_M-pyrifera_M_contig101999.432.1|Name=mRNA_M-pyrifera_M_contig101999.432.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig101999:3..479+ (Macrocystis pyrifera P11B4 male)
GCAGCGCTGGAGGCGGCCAAAGAGCTGCAGCTCACGACGGGCGGGTGGGC
GCCAGCCGGCTACCACACCACCGCCGGCCCTGACCTGGCCCTCAAGGCGT
TTGGCCTGCGCGAGGTGCACGGCGGTAGCCTGGCAAGGAGGTACGTCACG
CGCTCCATCCGTAACGTCGACGACACCGACGGCACGCTCGTCGTGCGCCT
GCGGCCCGGCCGCGGCACCGACAAGACCCTCGGCTATTGCTGGACTGGCA
AGTGGCAGCTGCCACCCAAGGCCCTGCCTGCAATCCCTTTCCGGCCGGTG
CTGGCCGTGAAGGCGCTGGACGACGACGCCTTGGGGCAGGTGGAGGACTT
CCTCCTCCGGTTTGGCATCAAGCGCCTGAATGTGGCCGGGCATCGCGACC
TCGACCCCGCCCGTGCCTGGCAGAAGCAGGTGCAGGCTTTCTTGCAGTCT
GCTTTTGCCCAAGCCCTCCACAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101999:3..479+

>mRNA_M-pyrifera_M_contig101999.432.1 ID=mRNA_M-pyrifera_M_contig101999.432.1|Name=mRNA_M-pyrifera_M_contig101999.432.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig101999:3..479+ (Macrocystis pyrifera P11B4 male)
GCAGCGCTGGAGGCGGCCAAAGAGCTGCAGCTCACGACGGGCGGGTGGGC
GCCAGCCGGCTACCACACCACCGCCGGCCCTGACCTGGCCCTCAAGGCGT
TTGGCCTGCGCGAGGTGCACGGCGGTAGCCTGGCAAGGAGGTACGTCACG
CGCTCCATCCGTAACGTCGACGACACCGACGGCACGCTCGTCGTGCGCCT
GCGGCCCGGCCGCGGCACCGACAAGACCCTCGGCTATTGCTGGACTGGCA
AGTGGCAGCTGCCACCCAAGGCCCTGCCTGCAATCCCTTTCCGGCCGGTG
CTGGCCGTGAAGGCGCTGGACGACGACGCCTTGGGGCAGGTGGAGGACTT
CCTCCTCCGGTTTGGCATCAAGCGCCTGAATGTGGCCGGGCATCGCGACC
TCGACCCCGCCCGTGCCTGGCAGAAGCAGGTGCAGGCTTTCTTGCAGTCT
GCTTTTGCCCAAGCCCTCCACAAATAAGCAGCGCTGGAGGCGGCCAAAGA
GCTGCAGCTCACGACGGGCGGGTGGGCGCCAGCCGGCTACCACACCACCG
CCGGCCCTGACCTGGCCCTCAAGGCGTTTGGCCTGCGCGAGGTGCACGGC
GGTAGCCTGGCAAGGAGGTACGTCACGCGCTCCATCCGTAACGTCGACGA
CACCGACGGCACGCTCGTCGTGCGCCTGCGGCCCGGCCGCGGCACCGACA
AGACCCTCGGCTATTGCTGGACTGGCAAGTGGCAGCTGCCACCCAAGGCC
CTGCCTGCAATCCCTTTCCGGCCGGTGCTGGCCGTGAAGGCGCTGGACGA
CGACGCCTTGGGGCAGGTGGAGGACTTCCTCCTCCGGTTTGGCATCAAGC
GCCTGAATGTGGCCGGGCATCGCGACCTCGACCCCGCCCGTGCCTGGCAG
AAGCAGGTGCAGGCTTTCTTGCAGTCTGCTTTTGCCCAAGCCCTCCACAA
ATAA
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