mRNA_M-pyrifera_M_contig101992.431.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101992.431.1
Unique NamemRNA_M-pyrifera_M_contig101992.431.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: A0A7S4MED3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MED3_9EUKA)

HSP 1 Score: 150 bits (378), Expect = 2.360e-39
Identity = 70/135 (51.85%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    1 MNFEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPELSAYPNNHPVIQADALKFVTTFRNQV 405
            +NFEE+  EYIR D+E ++ LTRR SAC+LV+GL +HN  AVT  F  ++   L +Y  +   NW++KDVA +L+ AL+ +GG    G T TN L+P++DF K  ++PEL  YP+NHPVIQAD LKF+ TFRNQ+
Sbjct:  361 INFEEEHLEYIRTDLEESNQLTRRSSACELVQGLRKHNEAAVTKAFAEHVMKQLAEYNQNKKENWKKKDVAFFLISALTISGGTRVQGVTSTNELVPVIDFLKDQVVPELQQYPDNHPVIQADTLKFLITFRNQI 495          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: C3Y1D2_BRAFL (Exportin-2 n=3 Tax=Branchiostoma TaxID=7737 RepID=C3Y1D2_BRAFL)

HSP 1 Score: 141 bits (355), Expect = 2.970e-36
Identity = 71/134 (52.99%), Postives = 97/134 (72.39%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPEL-SAYPNNHPVIQADALKFVTTFRNQV 405
            FE+D +EYIRRD+EG+DI TRRR+ACDLVRGLC+     VT  F AY+  +L ++A +PA NWR+KD AIYLV +L++    A LG+T+ + L+ + DF  S I  EL +A  N HPV++ADA+K+VTTFR  +
Sbjct:  363 FEDDPEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEAPVTQIFSAYVVAMLAEHAKNPAQNWRKKDAAIYLVTSLASKAQTAKLGSTQASELVNLTDFFTSHIATELQAANVNEHPVLRADAIKYVTTFRTHL 496          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: A0A553PRH1_TIGCA (Exportin-2 n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRH1_TIGCA)

HSP 1 Score: 140 bits (354), Expect = 4.050e-36
Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPEL-SAYPNNHPVIQADALKFVTTFRNQV 405
            FE++A+EYIRRD+EG+D+ TRRR+ACDLV+GL  +    +T  FGAY+  +L+ YA +PA  WR KD AIYLV +L+     A  G T+TN L+ + DFC   I+P+L S   N  PVI+ADA+K+V TFR+Q+
Sbjct:  351 FEDNAEEYIRRDLEGSDVDTRRRAACDLVKGLSRYFESQITEIFGAYVKTMLEMYATNPAQKWRSKDAAIYLVTSLATRAKTAKHGITQTNQLVDLSDFCLKYIIPDLQSQNVNELPVIKADAIKYVMTFRSQL 484          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: F2U796_SALR5 (Cellular apoptosis susceptibility protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U796_SALR5)

HSP 1 Score: 139 bits (350), Expect = 1.400e-35
Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPELSAYPNNHPVIQADALKFVTTFRNQV 405
            FE++A+EYIRRDIEG+D+ TRRR+ACDLVRGLC+     VT  F A+++ L++ Y ADP NNW+ KDVAI+LV +L+     A  G T+TN  I + DF  + I+  L     +HPV+ ADA+K+V TFR  +
Sbjct:  358 FEDNAEEYIRRDIEGSDVDTRRRAACDLVRGLCKFFESQVTDIFSAHVSTLIETYQADPVNNWKSKDVAIFLVTSLAVRSKTASAGTTETNQFINVEDFFHNVIVAHLKPDAGSHPVLVADAIKYVLTFRGHL 490          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: L7MEW5_RHIPC (Exportin-2 (Fragment) n=10 Tax=Ixodidae TaxID=6939 RepID=L7MEW5_RHIPC)

HSP 1 Score: 138 bits (348), Expect = 2.610e-35
Identity = 66/134 (49.25%), Postives = 97/134 (72.39%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPEL-SAYPNNHPVIQADALKFVTTFRNQV 405
            FE++ +EY+R+DIEG+DI TRRR+ACDLVR L +H  + +T  F  YIT +LQQ+A DPA NW+ KDVAIYLV +++     A LG T+T++L+ ++DF +  I P+L +      PV++ADA+K++  FRNQ+
Sbjct:  365 FEDNPEEYVRKDIEGSDIDTRRRAACDLVRALSKHFEQKITETFSQYITAMLQQFAKDPAQNWKNKDVAIYLVTSMAVKAQTAKLGTTQTSSLVNVVDFYREFIAPDLHNENLTEFPVLKADAIKYLMVFRNQL 498          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: A0A7S0Q041_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q041_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 3.050e-35
Identity = 72/133 (54.14%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPELSAYPNNHPVIQADALKFVTTFRNQV 405
            FE++  EY+RRDIEG+D  TRRR +CDLVRGLC++    VT  F +YI +LLQ +AA   + ++ KDVAIYLVIAL+  GGNA LGAT+TN L+ ++ F    +L EL  +P  +PV+ ADA+KFVT FR Q+
Sbjct:  385 FEDNPMEYVRRDIEGSDSDTRRRVSCDLVRGLCKNYEAEVTRLFSSYIGSLLQTFAAGGPDGFKAKDVAIYLVIALTIKGGNARLGATQTNQLVELLPFFNGHVLAEL--HPERNPVLVADAIKFVTVFRAQL 515          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: A0A6F9DAN2_9ASCI (Exportin-2 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DAN2_9ASCI)

HSP 1 Score: 137 bits (345), Expect = 6.620e-35
Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPELS-AYPNNHPVIQADALKFVTTFRNQV 405
            FE++ +EYIRRD+EG+D+ TRRR+ACDLVRGL +     VT  F  Y+  +LQQY++ P  +W+ KD AIYLV +L+  G  A LG T++N L+ + DF  S ILPEL+ A  N H V++AD++K+V TFR Q+
Sbjct:  364 FEDNPEEYIRRDLEGSDVDTRRRAACDLVRGLTKQFQAPVTQIFSQYVGIMLQQYSSSPTQHWKSKDAAIYLVTSLAQKGSTAKLGTTQSNELVNLQDFFSSHILPELNQAKINEHSVLKADSIKYVVTFRTQL 497          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: A0A336M2M8_CULSO (Exportin-2 n=2 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336M2M8_CULSO)

HSP 1 Score: 137 bits (345), Expect = 6.620e-35
Identity = 70/132 (53.03%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPELSAYPNNH-PVIQADALKFVTTFRN 399
            FEE+ +EYIRRDIEG+DI TRRR+ACDLV+ L +     +   FG Y+  LL +YA +P  NWR KD AIYLV+AL++ G    +G T+T+ L+P+ DFCK  I+PEL     N  PV++ADALKF+ TFR+
Sbjct:  365 FEENPEEYIRRDIEGSDIDTRRRAACDLVKILSQKFEAQIMEIFGRYLQVLLAKYAENPTTNWRAKDTAIYLVMALASRGSTQKMGVTQTSQLVPLPDFCKQQIIPELERPNINELPVLKADALKFLMTFRS 496          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: A0A1Y1UYM5_9FUNG (Cse1-domain-containing protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1UYM5_9FUNG)

HSP 1 Score: 137 bits (345), Expect = 6.620e-35
Identity = 71/136 (52.21%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPELSAYPNN--HPVIQADALKFVTTFRNQVL 408
            FE+D  EYIRRD+EG+D  TRRRS+ DL+RGL EH  + VT  F  Y+T  LQ Y ++P  NW+ KD A+YL+I+LSA    +  GATK N  IP+M+     ILP+L A  N   HP+I+ DALK++ TFRNQ L
Sbjct:  359 FEDDPIEYIRRDLEGSDSETRRRSSSDLIRGLLEHFEKEVTEIFSNYVTMCLQNYNSNPEQNWKAKDTALYLIISLSAKNLASQFGATKVNEYIPLMNVFNENILPDLRAPVNGNIHPIIKVDALKYLITFRNQFL 494          
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Match: A0A7M5XE06_9CNID (Exportin-2 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XE06_9CNID)

HSP 1 Score: 137 bits (344), Expect = 9.020e-35
Identity = 68/132 (51.52%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    7 FEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYITNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMDFCKSAILPELSAYP-NNHPVIQADALKFVTTFRN 399
            FE++ +EYIR+DIEG+DI TRRRSACDLVRGLC+   + VT  F AY+  LL QY ++P +NW+ KD  IY+V +L+     A  G T+TN L+ + DF K+ I P+LSA   + +PV++ADA+K+V TFR+
Sbjct:  362 FEDNPEEYIRKDIEGSDIDTRRRSACDLVRGLCKFYEQEVTNIFSAYVNQLLSQYQSNPQSNWKAKDACIYIVTSLATKKSTAKHGTTETNQLVNLEDFYKTQIEPDLSASDVDQYPVLKADAIKYVITFRS 493          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101992.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MED3_9EUKA2.360e-3951.85Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
C3Y1D2_BRAFL2.970e-3652.99Exportin-2 n=3 Tax=Branchiostoma TaxID=7737 RepID=... [more]
A0A553PRH1_TIGCA4.050e-3651.49Exportin-2 n=1 Tax=Tigriopus californicus TaxID=68... [more]
F2U796_SALR51.400e-3550.38Cellular apoptosis susceptibility protein n=1 Tax=... [more]
L7MEW5_RHIPC2.610e-3549.25Exportin-2 (Fragment) n=10 Tax=Ixodidae TaxID=6939... [more]
A0A7S0Q041_9EUKA3.050e-3554.14Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A6F9DAN2_9ASCI6.620e-3550.75Exportin-2 n=1 Tax=Phallusia mammillata TaxID=5956... [more]
A0A336M2M8_CULSO6.620e-3553.03Exportin-2 n=2 Tax=Culicoides sonorensis TaxID=179... [more]
A0A1Y1UYM5_9FUNG6.620e-3552.21Cse1-domain-containing protein n=4 Tax=Neocallimas... [more]
A0A7M5XE06_9CNID9.020e-3551.52Exportin-2 n=1 Tax=Clytia hemisphaerica TaxID=2526... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101992contigM-pyrifera_M_contig101992:21..428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score143.3
Seed ortholog evalue8.5e-32
Seed eggNOG ortholog72019.SARC_03180T0
Preferred nameCSE1L
KEGG koko:K18423
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0007589,GO:0008104,GO:0008150,GO:0008219,GO:0008283,GO:0009987,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0017076,GO:0019001,GO:0031224,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0050878,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.Ran GTPase binding
EggNOG OGs38C02@33154,COG5657@1,KOG1992@2759
COG Functional cat.UY
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.6428645-CDS-M-pyrifera_M_contig101992:20..4281622815520.6428645-CDS-M-pyrifera_M_contig101992:20..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101992 21..428 -
1692277447.7629132-CDS-M-pyrifera_M_contig101992:20..4281692277447.7629132-CDS-M-pyrifera_M_contig101992:20..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101992 21..428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101992.431.1prot_M-pyrifera_M_contig101992.431.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101992 21..428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101992.431.1

>prot_M-pyrifera_M_contig101992.431.1 ID=prot_M-pyrifera_M_contig101992.431.1|Name=mRNA_M-pyrifera_M_contig101992.431.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MNFEEDADEYIRRDIEGNDILTRRRSACDLVRGLCEHNNEAVTANFGAYI
TNLLQQYAADPANNWRQKDVAIYLVIALSATGGNAYLGATKTNALIPIMD
FCKSAILPELSAYPNNHPVIQADALKFVTTFRNQVL
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mRNA from alignment at M-pyrifera_M_contig101992:21..428-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101992.431.1 ID=mRNA_M-pyrifera_M_contig101992.431.1|Name=mRNA_M-pyrifera_M_contig101992.431.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig101992:21..428- (Macrocystis pyrifera P11B4 male)
ATGAACTTCGAAGAGGATGCAGATGAGTACATCCGCCGCGACATCGAAGG CAACGACATCCTGACGAGACGCCGCTCTGCGTGTGACCTTGTTCGGGGCC TGTGTGAGCATAACAACGAGGCAGTCACGGCGAACTTTGGGGCCTACATC ACGAACCTCCTCCAGCAGTACGCCGCCGACCCCGCCAACAACTGGCGCCA GAAGGACGTCGCCATCTATCTTGTTATTGCGCTCTCTGCCACTGGAGGAA ATGCCTACCTCGGCGCCACCAAGACCAATGCTCTCATCCCCATCATGGAC TTCTGCAAGAGTGCCATTCTGCCCGAGCTCAGCGCTTACCCCAACAACCA TCCTGTCATTCAGGCAGATGCGCTGAAGTTCGTCACCACTTTCCGCAACC AGGTACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101992:21..428-

>mRNA_M-pyrifera_M_contig101992.431.1 ID=mRNA_M-pyrifera_M_contig101992.431.1|Name=mRNA_M-pyrifera_M_contig101992.431.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig101992:21..428- (Macrocystis pyrifera P11B4 male)
ATGAACTTCGAAGAGGATGCAGATGAGTACATCCGCCGCGACATCGAAGG
CAACGACATCCTGACGAGACGCCGCTCTGCGTGTGACCTTGTTCGGGGCC
TGTGTGAGCATAACAACGAGGCAGTCACGGCGAACTTTGGGGCCTACATC
ACGAACCTCCTCCAGCAGTACGCCGCCGACCCCGCCAACAACTGGCGCCA
GAAGGACGTCGCCATCTATCTTGTTATTGCGCTCTCTGCCACTGGAGGAA
ATGCCTACCTCGGCGCCACCAAGACCAATGCTCTCATCCCCATCATGGAC
TTCTGCAAGAGTGCCATTCTGCCCGAGCTCAGCGCTTACCCCAACAACCA
TCCTGTCATTCAGGCAGATGCGCTGAAGTTCGTCACCACTTTCCGCAACC
AGGTACTTATGAACTTCGAAGAGGATGCAGATGAGTACATCCGCCGCGAC
ATCGAAGGCAACGACATCCTGACGAGACGCCGCTCTGCGTGTGACCTTGT
TCGGGGCCTGTGTGAGCATAACAACGAGGCAGTCACGGCGAACTTTGGGG
CCTACATCACGAACCTCCTCCAGCAGTACGCCGCCGACCCCGCCAACAAC
TGGCGCCAGAAGGACGTCGCCATCTATCTTGTTATTGCGCTCTCTGCCAC
TGGAGGAAATGCCTACCTCGGCGCCACCAAGACCAATGCTCTCATCCCCA
TCATGGACTTCTGCAAGAGTGCCATTCTGCCCGAGCTCAGCGCTTACCCC
AACAACCATCCTGTCATTCAGGCAGATGCGCTGAAGTTCGTCACCACTTT
CCGCAACCAGGTACTT
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