mRNA_M-pyrifera_M_contig101016.219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101016.219.1
Unique NamemRNA_M-pyrifera_M_contig101016.219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: A0A7S4K473_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4K473_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 2.960e-8
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   58 TTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQS-LAPQLLQFDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            T  +  L+  R++LLVFLRH GCRFC +    ++  + P L +     +LV++G  AQI AFR +T     I+VD
Sbjct:    3 TVMIPSLFSHRKILLVFLRHFGCRFCRQQVHAIRECVQPVLRRNGCEVVLVALGVPAQIPAFREETGFDGEIYVD 77          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: A0A0M0JMS1_9EUKA (Protein phosphatase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JMS1_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 4.410e-8
Identity = 28/86 (32.56%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   28 SVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLLQFDVHPILVSMGTQAQISAFRSKTSVT--MPIFVD 279
            S+ +++  G   ++  L+++RR+LLVFLRH GCRFC +    ++ +  +L +     +LVS+GT  QI  +R +  +   + ++VD
Sbjct:  592 SLVVLNAEGEAISVPTLWQKRRILLVFLRHFGCRFCKQQVRTMKVVQLRLKEAGTEVVLVSLGTPDQIERYRKELDIPACIEVYVD 677          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: A0A7S3C0S9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C0S9_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 2.070e-7
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   43 DERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLLQFDVHPILVSMGTQAQISAFRSKTSVT--MPIFVD 279
            D  G    +  L+R RR+LLV LRH GCRFC +    ++    +L +     +L+S+G   QIS FR+K  +   + ++VD
Sbjct:   23 DTDGNMVEVPTLWRSRRILLVMLRHFGCRFCKQQVHSIKMAHSRLHEGGTEVVLISIGRPDQISRFRAKMGLPDEIEVYVD 103          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: A0A518E2Y1_9BACT (Peroxiredoxin n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518E2Y1_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.810e-7
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   22 AASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLLQFDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            A SV L D  G    + DL+ ER + L+F+RHLGC  C +   D++     + +     I V+MGT  Q +AF++  S+  P F D
Sbjct:   14 APSVTLPDTTGADVALADLWAERPLALLFMRHLGCALCREQVDDLRRDYADIQKVGGAAI-VTMGTVEQTAAFKANRSLPFPCFSD 98          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: D3ZAK1_RAT (Peroxiredoxin-like 2C n=2 Tax=Rattus norvegicus TaxID=10116 RepID=D3ZAK1_RAT)

HSP 1 Score: 53.1 bits (126), Expect = 1.150e-6
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   10 PLPAA-ASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLLQ-FDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            PL AA A + ++D  GR  T   L+RERR ++VF+RH  C  C +   D+  +   +LQ  DV  I++   +   I  F   T  +  I+VD
Sbjct:   29 PLAAAVAELPVLDASGRRVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLQEADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVD 120          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: UPI0000606E90 (Uncharacterized protein n=3 Tax=Murinae TaxID=39107 RepID=UPI0000606E90)

HSP 1 Score: 52.0 bits (123), Expect = 2.870e-6
Identity = 31/92 (33.70%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   10 PLPAA-ASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLL-QFDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            PL AA A + ++D  GR  T   L+RERR ++VF+RH  C  C +   D+  +   +L + DV  I++   +   I  F   T  +  I+VD
Sbjct:   29 PLAAAVAELPVLDASGRRVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLREADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVD 120          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: UPI001B3468EA (peroxiredoxin-like 2C n=2 Tax=Ochotona TaxID=9977 RepID=UPI001B3468EA)

HSP 1 Score: 53.1 bits (126), Expect = 2.950e-6
Identity = 32/92 (34.78%), Postives = 47/92 (51.09%), Query Frame = 1
Query:   10 PLPAA-ASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLLQ-FDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            PL AA A + ++D RGR      L+RERR ++VF+RH  C  C +   D+  +    LQ  DV  I++   +   I  F   T  +  I+VD
Sbjct:   29 PLAAAVAELPVLDARGRRVPFGALFRERRAVVVFVRHFLCYICKEYVEDLAKIPKSFLQEADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVD 120          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: UPI001917A232 (peroxiredoxin-like 2C isoform X1 n=4 Tax=Muroidea TaxID=337687 RepID=UPI001917A232)

HSP 1 Score: 53.1 bits (126), Expect = 3.100e-6
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   10 PLPAA-ASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLLQ-FDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            PL AA A + ++D  GR  T   L+RERR ++VF+RH  C  C +   D+  +   +LQ  DV  I++   +   I  F   T  +  I+VD
Sbjct:   29 PLAAAVAELPVLDASGRRVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLQEADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVD 120          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: A0A1Y7VJW5_MOUSE (Peroxiredoxin-like 2C (Fragment) n=2 Tax=Mus musculus TaxID=10090 RepID=A0A1Y7VJW5_MOUSE)

HSP 1 Score: 51.2 bits (121), Expect = 3.230e-6
Identity = 28/88 (31.82%), Postives = 45/88 (51.14%), Query Frame = 1
Query:   19 AAASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLL-QFDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            A A + ++D  GR  T   L+RERR ++VF+RH  C  C +   D+  +   +L + DV  I++   +   I  F   T  +  I+VD
Sbjct:    3 AVAELPVLDASGRRVTFGALFRERRAVVVFVRHFLCYVCKEYVEDLAKIPKSVLREADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVD 90          
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Match: UPI001875BD15 (peroxiredoxin-like 2C isoform X6 n=1 Tax=Manis pentadactyla TaxID=143292 RepID=UPI001875BD15)

HSP 1 Score: 52.4 bits (124), Expect = 3.770e-6
Identity = 31/92 (33.70%), Postives = 46/92 (50.00%), Query Frame = 1
Query:   10 PLPAA-ASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAADVQSLAPQLLQ-FDVHPILVSMGTQAQISAFRSKTSVTMPIFVD 279
            PL AA A + ++D  GR      L+RERR ++VF+RH  C  C +   D+  + P  LQ   V  I++   +   I  F   T  +  I+VD
Sbjct:   31 PLAAAVAELPVLDASGRRVPFGALFRERRAVVVFVRHFLCYICKEYVEDLAQIPPSFLQEASVSLIVIGQSSYHHIEPFCKLTGYSYEIYVD 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101016.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4K473_9EUKA2.960e-840.00Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A0M0JMS1_9EUKA4.410e-832.56Protein phosphatase n=1 Tax=Chrysochromulina tobin... [more]
A0A7S3C0S9_9EUKA2.070e-735.80Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A518E2Y1_9BACT2.810e-736.05Peroxiredoxin n=1 Tax=Lignipirellula cremea TaxID=... [more]
D3ZAK1_RAT1.150e-634.78Peroxiredoxin-like 2C n=2 Tax=Rattus norvegicus Ta... [more]
UPI0000606E902.870e-633.70Uncharacterized protein n=3 Tax=Murinae TaxID=3910... [more]
UPI001B3468EA2.950e-634.78peroxiredoxin-like 2C n=2 Tax=Ochotona TaxID=9977 ... [more]
UPI001917A2323.100e-634.78peroxiredoxin-like 2C isoform X1 n=4 Tax=Muroidea ... [more]
A0A1Y7VJW5_MOUSE3.230e-631.82Peroxiredoxin-like 2C (Fragment) n=2 Tax=Mus muscu... [more]
UPI001875BD153.770e-633.70peroxiredoxin-like 2C isoform X6 n=1 Tax=Manis pen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101016contigM-pyrifera_M_contig101016:122..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.5227396-CDS-M-pyrifera_M_contig101016:121..4001622815507.5227396-CDS-M-pyrifera_M_contig101016:121..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101016 122..400 +
1692277442.671627-CDS-M-pyrifera_M_contig101016:121..4001692277442.671627-CDS-M-pyrifera_M_contig101016:121..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101016 122..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101016.219.1prot_M-pyrifera_M_contig101016.219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101016 122..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101016.219.1

>prot_M-pyrifera_M_contig101016.219.1 ID=prot_M-pyrifera_M_contig101016.219.1|Name=mRNA_M-pyrifera_M_contig101016.219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MSTPLPAAASVQLVDERGRTTTMFDLYRERRVLLVFLRHLGCRFCWKMAA
DVQSLAPQLLQFDVHPILVSMGTQAQISAFRSKTSVTMPIFVD
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mRNA from alignment at M-pyrifera_M_contig101016:122..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101016.219.1 ID=mRNA_M-pyrifera_M_contig101016.219.1|Name=mRNA_M-pyrifera_M_contig101016.219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig101016:122..400+ (Macrocystis pyrifera P11B4 male)
ATGTCTACACCGTTGCCAGCAGCGGCTTCTGTGCAGTTGGTGGACGAGCG CGGACGCACAACCACCATGTTCGACCTGTATCGCGAGCGGCGCGTCTTGT TGGTGTTCCTGCGCCATCTGGGCTGTCGTTTCTGCTGGAAAATGGCGGCG GATGTGCAGTCGTTGGCTCCCCAACTGCTTCAGTTTGATGTGCACCCGAT TCTGGTGTCCATGGGCACGCAAGCTCAGATCTCAGCATTCCGCAGCAAGA CCAGCGTCACCATGCCCATCTTCGTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101016:122..400+

>mRNA_M-pyrifera_M_contig101016.219.1 ID=mRNA_M-pyrifera_M_contig101016.219.1|Name=mRNA_M-pyrifera_M_contig101016.219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig101016:122..400+ (Macrocystis pyrifera P11B4 male)
ATGTCTACACCGTTGCCAGCAGCGGCTTCTGTGCAGTTGGTGGACGAGCG
CGGACGCACAACCACCATGTTCGACCTGTATCGCGAGCGGCGCGTCTTGT
TGGTGTTCCTGCGCCATCTGGGCTGTCGTTTCTGCTGGAAAATGGCGGCG
GATGTGCAGTCGTTGGCTCCCCAACTGCTTCAGTTTGATGTGCACCCGAT
TCTGGTGTCCATGGGCACGCAAGCTCAGATCTCAGCATTCCGCAGCAAGA
CCAGCGTCACCATGCCCATCTTCGTCGACATGTCTACACCGTTGCCAGCA
GCGGCTTCTGTGCAGTTGGTGGACGAGCGCGGACGCACAACCACCATGTT
CGACCTGTATCGCGAGCGGCGCGTCTTGTTGGTGTTCCTGCGCCATCTGG
GCTGTCGTTTCTGCTGGAAAATGGCGGCGGATGTGCAGTCGTTGGCTCCC
CAACTGCTTCAGTTTGATGTGCACCCGATTCTGGTGTCCATGGGCACGCA
AGCTCAGATCTCAGCATTCCGCAGCAAGACCAGCGTCACCATGCCCATCT
TCGTCGAC
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