mRNA_M-pyrifera_M_contig101012.218.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101012.218.1
Unique NamemRNA_M-pyrifera_M_contig101012.218.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: D3BHQ3_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BHQ3_POLPP)

HSP 1 Score: 79.0 bits (193), Expect = 2.660e-15
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 TVDLLQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHWQSVHRTA 246
            T+ +L+Y  LKNL  I E   ++ +A+ FF  A+ +D +D++VWYH+G+ +  +Q  + +R AFE+ALQ  P+HW S+ R A
Sbjct:  102 TMSVLKYSTLKNLATISELVDDRERALNFFTRAIDIDASDLLVWYHIGRLAGELQRWNVSRLAFERALQLSPTHWMSLERLA 183          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: A0A2D4BY13_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY13_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 8.660e-15
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHWQSVH 237
            L+YLC KNLG +  ++     A+Q+F  AL +DDTDV+VW+H+GKA+ A   +  AR A E+ L+ D + W  +H
Sbjct:   75 LRYLCFKNLGQLEAERSAPDDAVQYFSEALALDDTDVLVWFHMGKAAVATGRLWLARRALEEGLRLDATFWPLLH 149          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: A0A087U984_STEMI (Calcineurin-binding protein cabin-1 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087U984_STEMI)

HSP 1 Score: 75.5 bits (184), Expect = 1.270e-14
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHW 225
            L+YL  KNL  I  +K +   A+ FFL AL++D TDV +WY +GKAS  + N S AR  FE+ L+ +P+HW
Sbjct:   83 LKYLVYKNLATISNEKQDYLAAVTFFLEALEIDATDVSMWYRMGKASLNISNYSLARLCFEEGLKCNPNHW 153          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: UPI0015ACA17B (calcineurin-binding protein cabin-1-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ACA17B)

HSP 1 Score: 73.6 bits (179), Expect = 2.230e-14
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHW 225
            L+YL  KNL  I   K +   A+ FFL AL++D TDV +WY +GKAS  + N S AR  FE+ L+ +P+HW
Sbjct:   83 LKYLVYKNLATISNGKQDYHAAVTFFLEALEIDATDVSMWYRMGKASINISNYSLARLCFEEGLKCNPNHW 153          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: L8GEZ4_ACACA (Tetratricopeptide repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEZ4_ACACA)

HSP 1 Score: 74.7 bits (182), Expect = 8.190e-14
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHWQSV 234
            L+YLCLKNL  + + +G    A+++++ AL V+ TDV VWYH+G  +    + + AR AFE+AL  +P HW S+
Sbjct:   75 LRYLCLKNLADVNDAQGNANAALKYYVQALDVESTDVAVWYHVGSLARRTHHTALARHAFERALSCNPKHWLSL 148          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: UPI00077FA040 (calcineurin-binding protein cabin-1 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FA040)

HSP 1 Score: 71.6 bits (174), Expect = 9.980e-13
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHWQSV 234
            L+YL  KNL  I   K +   A+++FL AL++D TDV++W+ +G A+  + N   AR  FE+ L+ +P+HW S+
Sbjct:   83 LKYLLYKNLATISNDKKDFKSAVEYFLEALEIDGTDVIMWFRMGNAAINISNFPLARLCFEEGLKSNPNHWPSM 156          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: A0A6P8HYG3_ACTTE (calcineurin-binding protein cabin-1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HYG3_ACTTE)

HSP 1 Score: 70.9 bits (172), Expect = 1.840e-12
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   10 LLQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHW 225
            +L+Y   KNL  + E KGE  KA   +L A+ +DD+DV VWYH+GK      N+S AR AFE+ L+ +  HW
Sbjct:   82 VLKYSAYKNLAVLAENKGEYEKATDAYLEAVLLDDSDVTVWYHIGKVFMKSFNLSLARQAFEEGLRCNSKHW 153          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: A0A7R8UTM9_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UTM9_HERIL)

HSP 1 Score: 70.5 bits (171), Expect = 2.520e-12
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHW 225
            ++Y C KNL  IYE KGE+ KA++ F+ A+ +DD+DV     LG+ +  ++ ++ A +AFE+ L ++P+HW
Sbjct:   81 IRYNCHKNLALIYEDKGEEEKALEHFMEAMHLDDSDVYTMNRLGQLALKLKQVNLAEYAFEKCLAKNPNHW 151          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: UPI0018CC1866 (calcineurin-binding protein cabin-1-like n=1 Tax=Hermetia illucens TaxID=343691 RepID=UPI0018CC1866)

HSP 1 Score: 70.5 bits (171), Expect = 2.540e-12
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHW 225
            ++Y C KNL  IYE KGE+ KA++ F+ A+ +DD+DV     LG+ +  ++ ++ A +AFE+ L ++P+HW
Sbjct:   81 IRYNCHKNLALIYEDKGEEEKALEHFMEAMHLDDSDVYTMNRLGQLALKLKQVNLAEYAFEKCLAKNPNHW 151          
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Match: A0A4Y2KEF1_ARAVE (Calcineurin-binding protein cabin-1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KEF1_ARAVE)

HSP 1 Score: 69.7 bits (169), Expect = 4.760e-12
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   13 LQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKASAAVQNMSAARWAFEQALQRDPSHW 225
            L+YL  KNL  +   K +   A+++FL AL++D TDV +WY +GKA+  + N + AR  FE+ L+ +P+HW
Sbjct:   83 LKYLLYKNLANVSNAKKDFRAAVEYFLEALEIDGTDVFMWYQMGKAALNIHNYALARLCFEEGLKCNPNHW 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101012.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D3BHQ3_POLPP2.660e-1541.46Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A2D4BY13_PYTIN8.660e-1544.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A087U984_STEMI1.270e-1447.89Calcineurin-binding protein cabin-1 (Fragment) n=1... [more]
UPI0015ACA17B2.230e-1447.89calcineurin-binding protein cabin-1-like n=1 Tax=S... [more]
L8GEZ4_ACACA8.190e-1443.24Tetratricopeptide repeat-containing protein n=1 Ta... [more]
UPI00077FA0409.980e-1340.54calcineurin-binding protein cabin-1 n=1 Tax=Parast... [more]
A0A6P8HYG3_ACTTE1.840e-1245.83calcineurin-binding protein cabin-1-like n=1 Tax=A... [more]
A0A7R8UTM9_HERIL2.520e-1240.85Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
UPI0018CC18662.540e-1240.85calcineurin-binding protein cabin-1-like n=1 Tax=H... [more]
A0A4Y2KEF1_ARAVE4.760e-1242.25Calcineurin-binding protein cabin-1 n=1 Tax=Araneu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101012contigM-pyrifera_M_contig101012:129..481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score73.2
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog6669.EFX75493
KEGG koko:K17613
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA replication-independent nucleosome assembly
EggNOG OGs2BW70@1,2QPUI@2759,38DSW@33154,3BC6W@33208,3CWQV@33213,41VYW@6656
COG Functional cat.S
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons3
Model size246
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101012.218.1prot_M-pyrifera_M_contig101012.218.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101012 129..481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.4471185-CDS-M-pyrifera_M_contig101012:128..1821622815507.4471185-CDS-M-pyrifera_M_contig101012:128..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101012 129..182 +
1692277442.6312416-CDS-M-pyrifera_M_contig101012:128..1821692277442.6312416-CDS-M-pyrifera_M_contig101012:128..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101012 129..182 +
1622815507.4639716-CDS-M-pyrifera_M_contig101012:230..2991622815507.4639716-CDS-M-pyrifera_M_contig101012:230..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101012 231..299 +
1692277442.643352-CDS-M-pyrifera_M_contig101012:230..2991692277442.643352-CDS-M-pyrifera_M_contig101012:230..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101012 231..299 +
1622815507.480444-CDS-M-pyrifera_M_contig101012:358..4811622815507.480444-CDS-M-pyrifera_M_contig101012:358..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101012 359..481 +
1692277442.660567-CDS-M-pyrifera_M_contig101012:358..4811692277442.660567-CDS-M-pyrifera_M_contig101012:358..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101012 359..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101012.218.1

>prot_M-pyrifera_M_contig101012.218.1 ID=prot_M-pyrifera_M_contig101012.218.1|Name=mRNA_M-pyrifera_M_contig101012.218.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
TVDLLQYLCLKNLGAIYEQKGEQFKAMQFFLAALQVDDTDVVVWYHLGKA
SAAVQNMSAARWAFEQALQRDPSHWQSVHRTA
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mRNA from alignment at M-pyrifera_M_contig101012:129..481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101012.218.1 ID=mRNA_M-pyrifera_M_contig101012.218.1|Name=mRNA_M-pyrifera_M_contig101012.218.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=353bp|location=Sequence derived from alignment at M-pyrifera_M_contig101012:129..481+ (Macrocystis pyrifera P11B4 male)
ACTGTGGATCTGCTTCAGTACCTCTGTCTTAAGAACCTCGGAGCCATCTA CGAGGTCAGTCTGTCTTCCCTCCCTATTCTGGACACGCCTGACGCTGTGC AGCAAAAGGGCGAGCAGTTCAAGGCCATGCAGTTCTTTCTTGCTGCCCTC CAAGTCGATGACACCGACGTCGTACGTTTCCCTCTTCTAATTGTTCCGTA TCCCTTGCTCAAGCGTCTGATACCTTACAGGTGGTTTGGTACCACCTCGG CAAGGCCAGCGCCGCCGTTCAGAACATGTCAGCTGCCAGGTGGGCGTTTG AACAAGCTCTCCAACGTGATCCCAGCCACTGGCAATCTGTCCATCGTACG GCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101012:129..481+

>mRNA_M-pyrifera_M_contig101012.218.1 ID=mRNA_M-pyrifera_M_contig101012.218.1|Name=mRNA_M-pyrifera_M_contig101012.218.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig101012:129..481+ (Macrocystis pyrifera P11B4 male)
ACTGTGGATCTGCTTCAGTACCTCTGTCTTAAGAACCTCGGAGCCATCTA
CGAGACTGTGGATCTGCTTCAGTACCTCTGTCTTAAGAACCTCGGAGCCA
TCTACGAGCAAAAGGGCGAGCAGTTCAAGGCCATGCAGTTCTTTCTTGCT
GCCCTCCAAGTCGATGACACCGACGTCCAAAAGGGCGAGCAGTTCAAGGC
CATGCAGTTCTTTCTTGCTGCCCTCCAAGTCGATGACACCGACGTCGTGG
TTTGGTACCACCTCGGCAAGGCCAGCGCCGCCGTTCAGAACATGTCAGCT
GCCAGGTGGGCGTTTGAACAAGCTCTCCAACGTGATCCCAGCCACTGGCA
ATCTGTCCATCGTACGGCCGTGGTTTGGTACCACCTCGGCAAGGCCAGCG
CCGCCGTTCAGAACATGTCAGCTGCCAGGTGGGCGTTTGAACAAGCTCTC
CAACGTGATCCCAGCCACTGGCAATCTGTCCATCGTACGGCC
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