mRNA_M-pyrifera_M_contig101002.214.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101002.214.1
Unique NamemRNA_M-pyrifera_M_contig101002.214.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101002.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101002contigM-pyrifera_M_contig101002:24..593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.2767026-CDS-M-pyrifera_M_contig101002:23..5931622815507.2767026-CDS-M-pyrifera_M_contig101002:23..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101002 24..593 -
1692277442.567338-CDS-M-pyrifera_M_contig101002:23..5931692277442.567338-CDS-M-pyrifera_M_contig101002:23..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101002 24..593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101002.214.1prot_M-pyrifera_M_contig101002.214.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101002 24..593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101002.214.1

>prot_M-pyrifera_M_contig101002.214.1 ID=prot_M-pyrifera_M_contig101002.214.1|Name=mRNA_M-pyrifera_M_contig101002.214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
CAPDTAISYRWSVPGSIVKLPSAFASGQVLFVQPNTLTAGSTYTVRVDVS
YRKFPTVSAYATAVVQVERSPVQMIIDGSESAVSRVSSSYDIFSLLNDPD
DPEETGRAAYTWVCKKLDTSGAVVSGSCSSSVAFQRALSTATSDFTVPAN
ALAADTTYQFTVSVVKQPGSRTASATMKLGVVSDTLPAVE
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mRNA from alignment at M-pyrifera_M_contig101002:24..593-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101002.214.1 ID=mRNA_M-pyrifera_M_contig101002.214.1|Name=mRNA_M-pyrifera_M_contig101002.214.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig101002:24..593- (Macrocystis pyrifera P11B4 male)
TGCGCCCCGGACACGGCCATCTCGTACCGCTGGAGCGTGCCCGGGTCGAT
CGTGAAGCTGCCTTCGGCGTTCGCGAGCGGCCAGGTGCTGTTCGTGCAGC
CCAACACCCTGACTGCGGGTTCTACGTACACCGTGCGTGTGGACGTGTCG
TACCGCAAGTTCCCGACCGTGTCTGCGTACGCCACCGCCGTTGTGCAGGT
GGAGCGCTCCCCGGTGCAGATGATCATCGACGGCTCCGAGTCTGCGGTGT
CCCGTGTGTCGTCCAGCTACGACATCTTCTCGCTGCTGAACGACCCTGAT
GATCCGGAGGAGACGGGCCGCGCTGCGTACACGTGGGTGTGCAAGAAGCT
GGACACGAGCGGTGCGGTTGTGTCCGGGTCGTGCAGCAGCTCTGTTGCCT
TCCAGCGTGCGCTGAGCACGGCGACGAGCGACTTCACCGTGCCCGCCAAC
GCTCTGGCGGCGGACACCACGTACCAGTTCACCGTGTCTGTGGTGAAGCA
GCCGGGCAGCCGCACGGCTTCGGCCACCATGAAGCTGGGCGTCGTGTCGG
ACACGCTTCCTGCGGTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101002:24..593-

>mRNA_M-pyrifera_M_contig101002.214.1 ID=mRNA_M-pyrifera_M_contig101002.214.1|Name=mRNA_M-pyrifera_M_contig101002.214.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig101002:24..593- (Macrocystis pyrifera P11B4 male)
TGCGCCCCGGACACGGCCATCTCGTACCGCTGGAGCGTGCCCGGGTCGAT
CGTGAAGCTGCCTTCGGCGTTCGCGAGCGGCCAGGTGCTGTTCGTGCAGC
CCAACACCCTGACTGCGGGTTCTACGTACACCGTGCGTGTGGACGTGTCG
TACCGCAAGTTCCCGACCGTGTCTGCGTACGCCACCGCCGTTGTGCAGGT
GGAGCGCTCCCCGGTGCAGATGATCATCGACGGCTCCGAGTCTGCGGTGT
CCCGTGTGTCGTCCAGCTACGACATCTTCTCGCTGCTGAACGACCCTGAT
GATCCGGAGGAGACGGGCCGCGCTGCGTACACGTGGGTGTGCAAGAAGCT
GGACACGAGCGGTGCGGTTGTGTCCGGGTCGTGCAGCAGCTCTGTTGCCT
TCCAGCGTGCGCTGAGCACGGCGACGAGCGACTTCACCGTGCCCGCCAAC
GCTCTGGCGGCGGACACCACGTACCAGTTCACCGTGTCTGTGGTGAAGCA
GCCGGGCAGCCGCACGGCTTCGGCCACCATGAAGCTGGGCGTCGTGTCGG
ACACGCTTCCTGCGGTGGAGTGCGCCCCGGACACGGCCATCTCGTACCGC
TGGAGCGTGCCCGGGTCGATCGTGAAGCTGCCTTCGGCGTTCGCGAGCGG
CCAGGTGCTGTTCGTGCAGCCCAACACCCTGACTGCGGGTTCTACGTACA
CCGTGCGTGTGGACGTGTCGTACCGCAAGTTCCCGACCGTGTCTGCGTAC
GCCACCGCCGTTGTGCAGGTGGAGCGCTCCCCGGTGCAGATGATCATCGA
CGGCTCCGAGTCTGCGGTGTCCCGTGTGTCGTCCAGCTACGACATCTTCT
CGCTGCTGAACGACCCTGATGATCCGGAGGAGACGGGCCGCGCTGCGTAC
ACGTGGGTGTGCAAGAAGCTGGACACGAGCGGTGCGGTTGTGTCCGGGTC
GTGCAGCAGCTCTGTTGCCTTCCAGCGTGCGCTGAGCACGGCGACGAGCG
ACTTCACCGTGCCCGCCAACGCTCTGGCGGCGGACACCACGTACCAGTTC
ACCGTGTCTGTGGTGAAGCAGCCGGGCAGCCGCACGGCTTCGGCCACCAT
GAAGCTGGGCGTCGTGTCGGACACGCTTCCTGCGGTGGAG
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