mRNA_M-pyrifera_M_contig100925.202.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100925.202.1
Unique NamemRNA_M-pyrifera_M_contig100925.202.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A7S4NVJ8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NVJ8_9EUKA)

HSP 1 Score: 156 bits (395), Expect = 1.200e-43
Identity = 77/136 (56.62%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   73 LLLCFLAYGVLQERIMTRPYGPDAEMFASSAFVVLCNRAVAVCGAALLLLREGSTLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            L+L FL YGVLQER+MT PYGP+ EMF  SAF+VL NR V V  A L+L   G ++ N AP +K   +  SNTLAT CQ+E+LKY+SFP QTLGKCGK IPV++    L  K+Y A DY A ++I++GC  FLL G
Sbjct:   39 LVLAFLVYGVLQERLMTIPYGPEDEMFTFSAFLVLNNRVVVVFVALLILKFTGESVANVAPLYKYFYISFSNTLATFCQYESLKYISFPTQTLGKCGKMIPVMIISGFLGLKKYQAKDYGAAISISIGCTLFLLGG 174          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A1Y1I7H6_KLENI (UDP-N-acetylglucosamine (UAA) transporter family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I7H6_KLENI)

HSP 1 Score: 146 bits (369), Expect = 9.310e-40
Identity = 76/160 (47.50%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    1 GAKTTAATQLWESRAVGMALSAAGLLLCFLAYGVLQERIMTRPYGPDAEMFASSAFVVLCNRAVAVCGAALLLLREGSTLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            G ++      ++S  V + L+A G+L   + YGVLQERIM  PYG + E F  S F+VLCNRA+       LL  +  +L   AP +  + V LSN +AT CQ+EALKYVSFP QTL KC K +PV+++G ++  KRY   DY   V ITLGC  FLLTG
Sbjct:   11 GLRSYLGPNFFQSETVRLVLAAFGILSSLMLYGVLQERIMKVPYGEEQEYFKFSLFLVLCNRALTCSVCVGLLWAQSKSLNPVAPLYSYAAVSLSNVVATTCQYEALKYVSFPTQTLAKCAKMMPVMIWGTIIMGKRYGPKDYFLAVLITLGCTVFLLTG 170          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A061RWT0_9CHLO (Solute carrier family 35 (Adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RWT0_9CHLO)

HSP 1 Score: 145 bits (365), Expect = 2.540e-39
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   52 MALSAAGLLLCFLAYGVLQERIMTRPYGPDAEMFASSAFVVLCNRAVAVCGAALLLLREGSTLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            +A  A+G++ C L YGVLQERIM  P+G + E F  S F+VLCNR  ++  AAL  L  G  ++  AP W    V +SN +AT CQ+EALKYVSFP QTLGKC K IPV+++G  +  K Y   DY   V +T+GC  F+LTG
Sbjct:   15 VAWCASGIIGCLLLYGVLQERIMIEPFGEEQERFKFSLFLVLCNRMTSMLIAALGCLLYGEGIKPIAPIWNYCAVSVSNVVATFCQYEALKYVSFPVQTLGKCAKMIPVMVWGKFILQKSYKLLDYTVAVVVTVGCTVFILTG 157          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A4S9D7_OSTLU (DMT family transporter: UDP-galactose/UDP-glucose n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9D7_OSTLU)

HSP 1 Score: 142 bits (359), Expect = 1.030e-38
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = 1
Query:   34 ESRAVGMALSAAGLLLCFLAYGVLQERIMTRPYGPDAEMFASSAFVVLCNRAVAVCGAALLLLREGSTLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            +++   +A+   G++   + YG+LQERIMTRPYG ++E F  S F+VL NR ++   AA +L      +Q AAP WK + V  SN LAT CQ+EAL+YVSFP QTLGKC K IPV+++G  +  +RYT +DY     +TLGC  F L G
Sbjct:    4 QTQMTRIAMCVVGVVGSLIVYGILQERIMTRPYGVESEYFKYSVFLVLSNRVLSASLAAAILAYTKGMVQPAAPIWKYAGVSASNVLATTCQYEALRYVSFPVQTLGKCAKMIPVMIWGYFINQRRYTLNDYVIASCVTLGCTIFALYG 152          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A836BYV0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYV0_9CHLO)

HSP 1 Score: 143 bits (361), Expect = 1.580e-38
Identity = 72/141 (51.06%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   70 GLLLCFLAYGVLQERIMTRPYGPDA--EMFASSAFVVLCNRAVAVCGAALLLLREG--STLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            G++ C + YGVLQERIMT PYGP+   E+F  S F+VLCNR      A ++L+ +G  S ++  AP W    V LSN +AT CQ+EALKYVSFP QTLGKC K +PV+++G  +  K+Y A D+   + IT GC  FLLTG
Sbjct:   25 GIVGCLMLYGVLQERIMTMPYGPEGAGEVFKYSLFLVLCNRLTTCAVAIVMLVYDGKYSEIKPVAPIWTYFAVSLSNVVATTCQYEALKYVSFPVQTLGKCAKMLPVMIWGIFMLRKKYKAGDWGLALVITSGCTVFLLTG 165          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A7S1VK03_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VK03_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 2.700e-38
Identity = 80/156 (51.28%), Postives = 100/156 (64.10%), Query Frame = 1
Query:   28 LWESRAVGMALSAAGLLLCFLAYGVLQERIMTRPYGPDAE----MFASSAFVVLCNRAVAVCGAALLLLREGSTLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGAL-LAAKRYTASDYAACVAITLGCAAFLLTG 480
            L + + V + L  +GL L FL YGV+QERIMT+PYG DA+     F ++AF+V  NR V +  A  L LR G +L+N AP        +SN  AT CQ+EALKYVSFP QTLGKCGK IPVL+ G L +  K+Y   DY   V IT GCA FL++G
Sbjct:   17 LRDPKTVRLVLLISGLFLFFLLYGVVQERIMTKPYGMDADGNPIFFKNTAFLVFNNRVVTMTIAVFLALRSGESLRNQAPLSNYFGASISNFAATWCQYEALKYVSFPTQTLGKCGKVIPVLVLGTLGVGIKKYGRQDYFEAVIITFGCAIFLMSG 172          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A2K3DML1_CHLRE (Uncharacterized protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DML1_CHLRE)

HSP 1 Score: 142 bits (357), Expect = 5.450e-38
Identity = 74/149 (49.66%), Postives = 97/149 (65.10%), Query Frame = 1
Query:   46 VGMALSAAGLLLCFLAYGVLQERIMTRPYGPDA--EMFASSAFVVLCNRAVAVCGAALLLLREG--STLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            V +A    G++ C + YGVLQERIMT P+G  A  E+F  S F+VLCNR      A ++L+ +G  S +   AP W    V LSN +AT CQ+EALKYVSFP QTLGKC K +PV+++G L+  K+Y A+D+   + IT GC  FLLTG
Sbjct:   17 VHVAWCVTGIVGCLMLYGVLQERIMTMPFGEGAAAEVFKYSLFLVLCNRLTTCAVAIVMLVHDGKYSEIYPVAPIWTYFAVSLSNVIATTCQYEALKYVSFPVQTLGKCAKMLPVMIWGILMLRKKYKAADWGLALVITSGCTVFLLTG 165          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A5J4YXY6_PORPP (Adenosine 3'-phospho 5'-phosphosulfate transporter 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXY6_PORPP)

HSP 1 Score: 141 bits (356), Expect = 6.500e-38
Identity = 74/144 (51.39%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   70 GLLLCFLAYGVLQERIMTRPYGPDAE-----MFASSAFVVLCNRAVAVCGAALLLL--REGSTLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            G++   + YGVLQE+IMT+PYG D+E     MF +S F+VL NR  A   AA++L+  +E S L+N AP +K   V +SN +AT CQ+EALK+V+FP QTL KCGK +PV+++G  ++AK+YT  DYA  V + LGC AF LTG
Sbjct:   49 GIIGSLMVYGVLQEKIMTKPYGVDSEGNGGEMFKNSFFLVLNNRFAAGFVAAMILIAQKEYSQLKNTAPLYKYFMVSVSNVVATTCQYEALKHVTFPTQTLFKCGKMVPVMIWGTFISAKKYTIVDYAVAVCVALGCTAFTLTG 192          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A7S3VIB7_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VIB7_DUNTE)

HSP 1 Score: 142 bits (357), Expect = 7.510e-38
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = 1
Query:   28 LWE----SRAVGMALSAAGLLLCFLAYGVLQERIMTRPYGP---DAEMFASSAFVVLCNRAVAVCGAALLLLREG--STLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            LWE    +  + +A   +G++ C + YGVLQERIMTRP+G    DAE F  S F+VLCNR  +   A   L+ +G  S ++  AP +  + V LSN +AT CQ+EALKYV+FP QTLGKC K IPV+++G ++  K+YT  D+   VA+T GC  FLLTG
Sbjct:   20 LWERIKANDKLHLAWCVSGVVGCLMLYGVLQERIMTRPFGEPGKDAEHFKYSLFLVLCNRLTSCAVAIFGLVSDGKLSEIKPVAPLYSYAAVSLSNVVATTCQYEALKYVTFPVQTLGKCAKMIPVMIWGIMIMRKKYTLKDFGIAVAVTGGCTLFLLTG 179          
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Match: A0A7S1SX98_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SX98_9CHLO)

HSP 1 Score: 141 bits (355), Expect = 9.140e-38
Identity = 69/143 (48.25%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   52 MALSAAGLLLCFLAYGVLQERIMTRPYGPDAEMFASSAFVVLCNRAVAVCGAALLLLREGSTLQNAAPFWKSSCVGLSNTLATLCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAITLGCAAFLLTG 480
            MA    G++ C L YGVLQERIM  P+G + + F  S F+VLCNR   +  A L  L  G  +   AP W  + V +SN +AT CQ+EALKYVSFP QTL KC K IPV+++G+++  K Y A DY   + +T+GC  F+LTG
Sbjct:   18 MAWCVVGIVGCLLMYGVLQERIMVEPFGDEGDRFKYSLFLVLCNRLTTMTVAILGCLIYGEGISPIAPIWNYAAVSVSNVVATFCQYEALKYVSFPVQTLAKCAKMIPVMIWGSIIMRKVYKAKDYLIALLVTIGCTIFILTG 160          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100925.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4NVJ8_9EUKA1.200e-4356.62Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A1Y1I7H6_KLENI9.310e-4047.50UDP-N-acetylglucosamine (UAA) transporter family n... [more]
A0A061RWT0_9CHLO2.540e-3950.35Solute carrier family 35 (Adenosine 3'-phospho 5'-... [more]
A4S9D7_OSTLU1.030e-3847.65DMT family transporter: UDP-galactose/UDP-glucose ... [more]
A0A836BYV0_9CHLO1.580e-3851.06Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S1VK03_9EUKA2.700e-3851.28Hypothetical protein n=1 Tax=Sexangularia sp. CB-2... [more]
A0A2K3DML1_CHLRE5.450e-3849.66Uncharacterized protein n=4 Tax=Chlamydomonas TaxI... [more]
A0A5J4YXY6_PORPP6.500e-3851.39Adenosine 3'-phospho 5'-phosphosulfate transporter... [more]
A0A7S3VIB7_DUNTE7.510e-3848.13Hypothetical protein n=2 Tax=Dunaliella tertiolect... [more]
A0A7S1SX98_9CHLO9.140e-3848.25Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100925contigM-pyrifera_M_contig100925:128..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score144.1
Seed ortholog evalue5.8e-32
Seed eggNOG ortholog242159.ABP00212
KEGG koko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transporter
EggNOG OGs34HAW@3041,37JV3@33090,COG0697@1,KOG1581@2759
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.6373463-CDS-M-pyrifera_M_contig100925:127..6071622815506.6373463-CDS-M-pyrifera_M_contig100925:127..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100925 128..607 +
1692277442.2806566-CDS-M-pyrifera_M_contig100925:127..6071692277442.2806566-CDS-M-pyrifera_M_contig100925:127..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100925 128..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100925.202.1prot_M-pyrifera_M_contig100925.202.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100925 128..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100925.202.1

>prot_M-pyrifera_M_contig100925.202.1 ID=prot_M-pyrifera_M_contig100925.202.1|Name=mRNA_M-pyrifera_M_contig100925.202.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
GAKTTAATQLWESRAVGMALSAAGLLLCFLAYGVLQERIMTRPYGPDAEM
FASSAFVVLCNRAVAVCGAALLLLREGSTLQNAAPFWKSSCVGLSNTLAT
LCQWEALKYVSFPAQTLGKCGKTIPVLLFGALLAAKRYTASDYAACVAIT
LGCAAFLLTG
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mRNA from alignment at M-pyrifera_M_contig100925:128..607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100925.202.1 ID=mRNA_M-pyrifera_M_contig100925.202.1|Name=mRNA_M-pyrifera_M_contig100925.202.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig100925:128..607+ (Macrocystis pyrifera P11B4 male)
GGCGCGAAAACGACAGCAGCGACACAGCTGTGGGAGTCACGTGCAGTGGG CATGGCCCTGAGTGCTGCGGGGCTGCTGCTGTGCTTCCTGGCGTACGGTG TGCTGCAGGAGCGCATCATGACGCGGCCCTACGGCCCCGACGCGGAGATG TTCGCCTCCTCTGCGTTCGTTGTGCTGTGCAACAGAGCAGTGGCGGTGTG TGGGGCTGCGCTGCTGCTGCTGCGCGAGGGGAGTACCCTGCAAAACGCCG CTCCCTTCTGGAAGAGCTCCTGCGTGGGCCTCTCCAACACTCTCGCAACC CTTTGCCAGTGGGAGGCTCTGAAATATGTCTCTTTTCCTGCACAGACTCT TGGCAAGTGCGGGAAGACCATTCCCGTCCTCCTCTTCGGCGCTCTCCTCG CCGCCAAGCGCTACACTGCCTCCGACTACGCCGCATGCGTCGCCATCACA CTCGGATGCGCCGCATTCCTCCTCACTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100925:128..607+

>mRNA_M-pyrifera_M_contig100925.202.1 ID=mRNA_M-pyrifera_M_contig100925.202.1|Name=mRNA_M-pyrifera_M_contig100925.202.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig100925:128..607+ (Macrocystis pyrifera P11B4 male)
GGCGCGAAAACGACAGCAGCGACACAGCTGTGGGAGTCACGTGCAGTGGG
CATGGCCCTGAGTGCTGCGGGGCTGCTGCTGTGCTTCCTGGCGTACGGTG
TGCTGCAGGAGCGCATCATGACGCGGCCCTACGGCCCCGACGCGGAGATG
TTCGCCTCCTCTGCGTTCGTTGTGCTGTGCAACAGAGCAGTGGCGGTGTG
TGGGGCTGCGCTGCTGCTGCTGCGCGAGGGGAGTACCCTGCAAAACGCCG
CTCCCTTCTGGAAGAGCTCCTGCGTGGGCCTCTCCAACACTCTCGCAACC
CTTTGCCAGTGGGAGGCTCTGAAATATGTCTCTTTTCCTGCACAGACTCT
TGGCAAGTGCGGGAAGACCATTCCCGTCCTCCTCTTCGGCGCTCTCCTCG
CCGCCAAGCGCTACACTGCCTCCGACTACGCCGCATGCGTCGCCATCACA
CTCGGATGCGCCGCATTCCTCCTCACTGGCGGCGCGAAAACGACAGCAGC
GACACAGCTGTGGGAGTCACGTGCAGTGGGCATGGCCCTGAGTGCTGCGG
GGCTGCTGCTGTGCTTCCTGGCGTACGGTGTGCTGCAGGAGCGCATCATG
ACGCGGCCCTACGGCCCCGACGCGGAGATGTTCGCCTCCTCTGCGTTCGT
TGTGCTGTGCAACAGAGCAGTGGCGGTGTGTGGGGCTGCGCTGCTGCTGC
TGCGCGAGGGGAGTACCCTGCAAAACGCCGCTCCCTTCTGGAAGAGCTCC
TGCGTGGGCCTCTCCAACACTCTCGCAACCCTTTGCCAGTGGGAGGCTCT
GAAATATGTCTCTTTTCCTGCACAGACTCTTGGCAAGTGCGGGAAGACCA
TTCCCGTCCTCCTCTTCGGCGCTCTCCTCGCCGCCAAGCGCTACACTGCC
TCCGACTACGCCGCATGCGTCGCCATCACACTCGGATGCGCCGCATTCCT
CCTCACTGGC
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