mRNA_M-pyrifera_M_contig100916.200.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100916.200.1
Unique NamemRNA_M-pyrifera_M_contig100916.200.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100916.200.1 vs. uniprot
Match: A0A2D4TBN1_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D4TBN1_9GAMM)

HSP 1 Score: 193 bits (490), Expect = 3.150e-62
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:    4 MFFDYEIVLLAQTGLVYSIGTSRAYADLDSCNTDMDLAVDTVRSRIPGLKGESPQFESDSFIVDLYCGYSEGGRFVELELAIFHKPTKGKIVVPDYSEY 300
            MFFDYEIVLLAQTGL YSI TSRAYADLDSCNTDM+LAVDTVRSRIPGLKGESPQFESDSFIVDLYCGYSEGGRFVELE AIFHKPTK KIVVPDYSEY
Sbjct:    1 MFFDYEIVLLAQTGLAYSIRTSRAYADLDSCNTDMNLAVDTVRSRIPGLKGESPQFESDSFIVDLYCGYSEGGRFVELEFAIFHKPTKEKIVVPDYSEY 99
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BLAST of mRNA_M-pyrifera_M_contig100916.200.1 vs. uniprot
Match: UPI00123997A9 (hypothetical protein n=1 Tax=Halopseudomonas salina TaxID=1323744 RepID=UPI00123997A9)

HSP 1 Score: 159 bits (402), Expect = 1.830e-47
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    4 MFFDYEIVLLAQTGLVYSIGTSRAYADLDSCNTDMDLAVDTVRSRIPGLKGESPQFESDSFIVDLYCGYSEGGRFVELELAIFHKPTKGKIVVPDYSEYGKGS 312
            MFFD EIVLLA+T L+YS+ TSRAYADL++CN D DLA   V +RIPGL GE+PQFES+SF+VDLYCGYS+GGRFVEL LAIFHKPT+ KI VPDYS++ K +
Sbjct:   97 MFFDQEIVLLAETSLIYSVQTSRAYADLEACNFDRDLAQKVVLARIPGLAGETPQFESESFVVDLYCGYSKGGRFVELHLAIFHKPTQEKIAVPDYSDFRKNN 199
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100916.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D4TBN1_9GAMM3.150e-6294.95Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1... [more]
UPI00123997A91.830e-4771.84hypothetical protein n=1 Tax=Halopseudomonas salin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100916contigM-pyrifera_M_contig100916:1..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.552289-UTR-M-pyrifera_M_contig100916:0..31622815506.552289-UTR-M-pyrifera_M_contig100916:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100916 1..3 +
1692277442.2405484-UTR-M-pyrifera_M_contig100916:0..31692277442.2405484-UTR-M-pyrifera_M_contig100916:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100916 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.5700781-CDS-M-pyrifera_M_contig100916:3..3151622815506.5700781-CDS-M-pyrifera_M_contig100916:3..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100916 4..315 +
1692277442.2519565-CDS-M-pyrifera_M_contig100916:3..3151692277442.2519565-CDS-M-pyrifera_M_contig100916:3..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100916 4..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100916.200.1prot_M-pyrifera_M_contig100916.200.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100916 4..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100916.200.1

>prot_M-pyrifera_M_contig100916.200.1 ID=prot_M-pyrifera_M_contig100916.200.1|Name=mRNA_M-pyrifera_M_contig100916.200.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MFFDYEIVLLAQTGLVYSIGTSRAYADLDSCNTDMDLAVDTVRSRIPGLK
GESPQFESDSFIVDLYCGYSEGGRFVELELAIFHKPTKGKIVVPDYSEYG
KGS*
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mRNA from alignment at M-pyrifera_M_contig100916:1..315+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100916.200.1 ID=mRNA_M-pyrifera_M_contig100916.200.1|Name=mRNA_M-pyrifera_M_contig100916.200.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig100916:1..315+ (Macrocystis pyrifera P11B4 male)
CCGATGTTCTTTGACTACGAGATAGTCTTGTTGGCACAAACGGGCTTGGT
TTACTCGATAGGAACGTCTCGTGCGTATGCAGACTTGGATTCCTGCAACA
CTGACATGGACTTGGCCGTCGATACTGTTCGATCTCGAATTCCTGGTCTG
AAAGGTGAATCTCCTCAATTCGAGTCTGATAGTTTCATTGTCGATCTGTA
TTGCGGTTACTCTGAGGGTGGCAGGTTTGTAGAGCTGGAGCTCGCTATCT
TCCACAAACCTACGAAAGGAAAAATTGTCGTGCCAGACTATTCTGAGTAC
GGGAAGGGCTCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100916:1..315+

>mRNA_M-pyrifera_M_contig100916.200.1 ID=mRNA_M-pyrifera_M_contig100916.200.1|Name=mRNA_M-pyrifera_M_contig100916.200.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig100916:1..315+ (Macrocystis pyrifera P11B4 male)
ATGTTCTTTGACTACGAGATAGTCTTGTTGGCACAAACGGGCTTGGTTTA
CTCGATAGGAACGTCTCGTGCGTATGCAGACTTGGATTCCTGCAACACTG
ACATGGACTTGGCCGTCGATACTGTTCGATCTCGAATTCCTGGTCTGAAA
GGTGAATCTCCTCAATTCGAGTCTGATAGTTTCATTGTCGATCTGTATTG
CGGTTACTCTGAGGGTGGCAGGTTTGTAGAGCTGGAGCTCGCTATCTTCC
ACAAACCTACGAAAGGAAAAATTGTCGTGCCAGACTATTCTGAGTACGGG
AAGGGCTCGTAGATGTTCTTTGACTACGAGATAGTCTTGTTGGCACAAAC
GGGCTTGGTTTACTCGATAGGAACGTCTCGTGCGTATGCAGACTTGGATT
CCTGCAACACTGACATGGACTTGGCCGTCGATACTGTTCGATCTCGAATT
CCTGGTCTGAAAGGTGAATCTCCTCAATTCGAGTCTGATAGTTTCATTGT
CGATCTGTATTGCGGTTACTCTGAGGGTGGCAGGTTTGTAGAGCTGGAGC
TCGCTATCTTCCACAAACCTACGAAAGGAAAAATTGTCGTGCCAGACTAT
TCTGAGTACGGGAAGGGCTCGTAG
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