mRNA_M-pyrifera_M_contig100904.197.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100904.197.1
Unique NamemRNA_M-pyrifera_M_contig100904.197.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Match: A0A3D1GAN7_9BACT (Omp85 domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GAN7_9BACT)

HSP 1 Score: 286 bits (732), Expect = 4.790e-93
Identity = 134/221 (60.63%), Postives = 172/221 (77.83%), Query Frame = 1
Query:    1 YYLGDTDKLGYDEARFDSSSYYDFKTFRVDIGGFTRLPIIRNGATNRFDLKIGLRFIYESPWGTPENRFIYAQNIEGREGAFLSLVDLGLIIERRDSEFRAESGYLFNLNTQYAPPGISTHHTVENSVLALGFLPLTKKVP-VTLATRVRFQNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPFKNIELGANVFADGGKVFSNE 660
            Y+LGDT+K   D  RFDS+SYY+FK F+V++GG TR PI       R DL  GLRF+YE PWGTPENR++Y Q++ G +GAFL+ ++LG ++ERR++EFRA+ GY  N  T+ APP ISTH T E     LG+LP+ K  P +TLA  VR ++T+G TPYWF P+LG G++LRGYMYRRF+SDN+LSYS+ELRSWL+KIPFKNIELG N+FADGG+VF+NE
Sbjct:  114 YHLGDTEKNPVDRPRFDSTSYYNFKAFKVNVGGSTRFPISLGEGIERMDLLTGLRFVYEKPWGTPENRYLYEQDLTGADGAFLTFLELGWVLERRNNEFRAQQGYYVNAGTKIAPPLISTHTTAEFYTTMLGYLPIFKDDPSLTLAGIVRLRSTVGDTPYWFMPYLGDGSTLRGYMYRRFSSDNSLSYSVELRSWLLKIPFKNIELGVNLFADGGRVFTNE 334          
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Match: A0A3M8FNC4_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8FNC4_9BACT)

HSP 1 Score: 275 bits (703), Expect = 9.680e-89
Identity = 132/220 (60.00%), Postives = 168/220 (76.36%), Query Frame = 1
Query:    1 YYLGDTDKLGYDEARFDSSSYYDFKTFRVDIGGFTRLPIIRNGATNRFDLKIGLRFIYESPWGTPENRFIYAQNIEGREGAFLSLVDLGLIIERRDSEFRAESGYLFNLNTQYAPPGISTHHTVENSVLALGFLPLTKKVP-VTLATRVRFQNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPFKNIELGANVFADGGKVFSN 657
            Y+ GDTD+  YDEARFDS+ +Y+F   RVDIGG  R PI       R +LK GL  IYE P+ T    FI  + IEGR+GAFLSL +LGLII++R+SEFRA  GYL ++ T+Y+P G+STHH ++N + ALGFLPLTK+ P VT+ATR  F N+ G+ PYWFTP LGG  +LRG++YRRFTSDNALSY++ELR+WLI +PFK+I+LG +VF DGG+VFSN
Sbjct:  108 YFFGDTDRQDYDEARFDSTDFYNFDMVRVDIGGVVRTPIEAWDPDKRIELKTGLSLIYERPFDTSATDFINTERIEGRDGAFLSLFELGLIIDQRNSEFRAGQGYLIDVGTRYSPIGLSTHHGIQNYLTALGFLPLTKRFPEVTMATRFSFVNSAGEKPYWFTPALGGSENLRGFIYRRFTSDNALSYTVELRTWLISLPFKSIDLGGHVFMDGGRVFSN 327          
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Match: A0A3D2IFB7_9BACT (Uncharacterized protein n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D2IFB7_9BACT)

HSP 1 Score: 148 bits (374), Expect = 1.910e-39
Identity = 81/220 (36.82%), Postives = 123/220 (55.91%), Query Frame = 1
Query:    1 YYLGDTDKLGYDEARFDSSSYYDFKTFRVDIGGFTRLPIIRNGATNRFDLKIGLRFIYESPWGTPENRFIYAQNIEGREGAFLSLVDLGLIIERRDSEFRAESGYLFNLNTQYAPPGISTHHTVENSVLALGFLPLTK--KVP-VTLATRVRFQNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPFKNIELGANVFADGGKVF 651
            Y+ G T   G+ + RFD++S+Y F +F ++IG  TR+P+       R D+KIGLR ++E P+      F+     +G EG+  S +++G + E RD EF ++SG LF+L  + + PGIS+    +       F   T   K+P +  A R    +T+G  PYWF P LGG  S RGY+YRRF     +  + E+R+WL K+P+    LG + F D G V+
Sbjct:  110 YFPGYTVDGGFSKERFDTTSFYHFNSFLLNIGVETRIPLSAIIDIRRTDIKIGLRVVHERPFDLISGSFMETNRPKGWEGSTYSFLEIGYLKENRDDEFSSKSGSLFSLGLKTSVPGISSSWIGQIFSEFRAFKQFTNPGKIPEIVFAQRFLVNHTIGDIPYWFAPSLGGAGSARGYIYRRFVGKGLVQSNTEIRTWLFKLPWLEARLGVSGFIDNGIVY 329          
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Match: A0A6C1P3K4_9BACT (Omp85 domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P3K4_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 4.750e-20
Identity = 68/212 (32.08%), Postives = 103/212 (48.58%), Query Frame = 1
Query:   40 ARFDS----SSYYDFKTFRVDIGGFTRLPIIRNGATNRFDLKIGLRFIYESPWGTPENRFIYAQNIEGREGAFLSLVDLGLIIERRDSEFRAESGYLFNL--NTQYAPPGISTHHTVENSVLA--LGFLPLTKKVPVTLATRVRFQNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPFKNIELGANVFADGGKVF 651
            + FDS    S +Y F +         R+P+ R+    R D+  GL   YE    T +   +      G  G + + V +GL  E RDSEF    G   +L  +  +   G     +V  + L+  +GF  L  +V   LA ++ +   +G  PYW  P LGG T+LRGY +RRF  + +++YS E+R+W        I+LG  +F DGG+VF
Sbjct:  168 SAFDSDLWNSDHYFFTSLSASGNLRARIPVSRSAGQRRLDVVPGLGVSYERAV-TNDLTLMETDPPVGVGGGWFNTVGIGLNWENRDSEFLPTRGNRADLRIDASHRLLGSDFSGSVIRTSLSQYIGFRLLLDQV---LAMQISYNQAIGTVPYWKLPSLGGETTLRGYAFRRFLDNASVNYSAEIRNWFFHHEATGIQLGGQIFMDGGRVF 375          
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Match: A0A371QP24_9BACT (Omp85 domain-containing protein n=1 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QP24_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 5.340e-14
Identity = 51/185 (27.57%), Postives = 83/185 (44.86%), Query Frame = 1
Query:  106 RLPIIRNGATNRFDLKIGLRFIYESPWGTPENRFIYAQNIEGREGAFLSLVDLGLIIERRDSEFRAESGYLFNLNTQYAPPGISTHHTVENSVLALGFL--PLTKKVPVTLATRVRFQNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPFKNIELGANVFADGGKVFS 654
            R P+      +  D  + L+  Y S     E    Y       +  +++ +  GL+ + R++EF  +SG    +    +     + ++       L +   PL   V   LA R   ++ +G TP+W  P LG    LRG+   RF  D+++ Y  ELR WL+      I LGA++F D G+VFS
Sbjct:  149 RTPLFDITGESALDGALRLKTSYTSATEDGEETRFYTDPPSHFDAGWVNTLGAGLLFDSRENEFAPKSGQRHEIGIDISSSLFGSSYSFYELFADLSYYLSPLENTV---LAQRFTARHNIGDTPFWELPALGSSRGLRGFALDRFMGDSSVLYMAELRQWLVSFLDDEIRLGAHLFFDTGRVFS 330          
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Match: A0A2V7IB66_9BACT (Omp85 domain-containing protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7IB66_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 4.270e-5
Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  274 IERRDSEFRAESGYLFNLNTQYAPPGIS-THHTVENSVLALGFLPLTKKVPV--TLATRVRFQNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPFKNI-ELGANVFADGGKVF 651
            ++ RD    A  G  F     Y P  +  T    E    A  +L  T ++P+  TLA R+  +   G  P++   ++GG T++RG++  RF  D A+S ++ELR  + +  F    ELG     D G+V+
Sbjct:  219 LDTRDQPRAARRGIAFGFGGSYYPKALDVTSPFGEGHAEASSYL--TARIPLQPTLALRIAGKKVWGTYPFYEAAYVGGATTVRGFVEHRFAGDAAVSGNIELRLSVARFFFLVPGELGVFGLGDAGRVY 346          
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Match: A0A843T8Q3_9BACT (BamA/TamA family outer membrane protein n=1 Tax=Gemmatimonas sp. TaxID=1962908 RepID=A0A843T8Q3_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 9.880e-5
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  370 VENSVLALGFLPLTKKVPVTLATRVRFQNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPFKNI--ELGANVFADGGKVF 651
            V +S  A  +  +   +  T+A R      LG  P+ +   +GGG+SLRGY   RFT D ++  S ELRS + ++  +    ++G  + AD G+VF
Sbjct:  720 VRSSATAATYFGVPLPLESTVALRAGGAWVLGDAPFQYAATVGGGSSLRGYRTNRFTGDQSVFGSAELRSLIGRVDLRIARGDIGTILLADLGRVF 815          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100904.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3D1GAN7_9BACT4.790e-9360.63Omp85 domain-containing protein n=1 Tax=Balneolace... [more]
A0A3M8FNC4_9BACT9.680e-8960.00Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A3D2IFB7_9BACT1.910e-3936.82Uncharacterized protein n=4 Tax=Bacteroidetes/Chlo... [more]
A0A6C1P3K4_9BACT4.750e-2032.08Omp85 domain-containing protein n=1 Tax=Balneolace... [more]
A0A371QP24_9BACT5.340e-1427.57Omp85 domain-containing protein n=1 Tax=Rhodohalob... [more]
A0A2V7IB66_9BACT4.270e-530.00Omp85 domain-containing protein (Fragment) n=1 Tax... [more]
A0A843T8Q3_9BACT9.880e-533.33BamA/TamA family outer membrane protein n=1 Tax=Ge... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100904contigM-pyrifera_M_contig100904:14..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score148.7
Seed ortholog evalue3.3e-33
Seed eggNOG ortholog1121104.AQXH01000008_gene2401
Hectar predicted targeting categoryother localisation
EggNOG free text desc.membrane organization
EggNOG OGsCOG4775@1,COG4775@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size660
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.3897383-CDS-M-pyrifera_M_contig100904:13..6731622815506.3897383-CDS-M-pyrifera_M_contig100904:13..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100904 14..673 -
1692277442.1416426-CDS-M-pyrifera_M_contig100904:13..6731692277442.1416426-CDS-M-pyrifera_M_contig100904:13..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100904 14..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100904.197.1prot_M-pyrifera_M_contig100904.197.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100904 14..673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100904.197.1

>prot_M-pyrifera_M_contig100904.197.1 ID=prot_M-pyrifera_M_contig100904.197.1|Name=mRNA_M-pyrifera_M_contig100904.197.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
YYLGDTDKLGYDEARFDSSSYYDFKTFRVDIGGFTRLPIIRNGATNRFDL
KIGLRFIYESPWGTPENRFIYAQNIEGREGAFLSLVDLGLIIERRDSEFR
AESGYLFNLNTQYAPPGISTHHTVENSVLALGFLPLTKKVPVTLATRVRF
QNTLGKTPYWFTPFLGGGTSLRGYMYRRFTSDNALSYSLELRSWLIKIPF
KNIELGANVFADGGKVFSNE
back to top

mRNA from alignment at M-pyrifera_M_contig100904:14..673-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100904.197.1 ID=mRNA_M-pyrifera_M_contig100904.197.1|Name=mRNA_M-pyrifera_M_contig100904.197.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig100904:14..673- (Macrocystis pyrifera P11B4 male)
TACTATTTAGGAGATACAGACAAACTCGGATATGATGAAGCTCGGTTTGA TTCCTCTTCCTATTATGATTTCAAAACATTTAGGGTTGACATTGGAGGCT TTACTAGACTTCCAATTATTCGAAATGGTGCTACCAATCGATTTGATTTG AAAATTGGACTAAGGTTTATCTACGAAAGCCCATGGGGTACTCCAGAAAA CCGATTTATATATGCGCAAAATATTGAAGGCAGAGAGGGTGCTTTCCTTT CGTTGGTTGATTTAGGATTGATTATTGAAAGAAGAGACTCTGAATTTAGA GCTGAAAGTGGATACTTATTCAATTTAAACACTCAGTATGCTCCTCCAGG AATTAGTACTCATCATACAGTAGAAAATTCTGTTCTGGCACTTGGTTTTT TACCATTAACTAAAAAGGTGCCAGTTACTTTAGCAACAAGAGTACGATTT CAGAATACACTAGGTAAAACCCCATATTGGTTTACGCCTTTTTTAGGAGG AGGAACTTCGTTAAGAGGGTATATGTATCGTCGTTTTACAAGCGATAATG CACTTTCATATTCACTTGAATTACGTTCTTGGCTCATTAAGATTCCTTTC AAAAATATAGAACTTGGAGCGAATGTCTTTGCTGATGGTGGTAAAGTATT TTCTAACGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100904:14..673-

>mRNA_M-pyrifera_M_contig100904.197.1 ID=mRNA_M-pyrifera_M_contig100904.197.1|Name=mRNA_M-pyrifera_M_contig100904.197.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig100904:14..673- (Macrocystis pyrifera P11B4 male)
TACTATTTAGGAGATACAGACAAACTCGGATATGATGAAGCTCGGTTTGA
TTCCTCTTCCTATTATGATTTCAAAACATTTAGGGTTGACATTGGAGGCT
TTACTAGACTTCCAATTATTCGAAATGGTGCTACCAATCGATTTGATTTG
AAAATTGGACTAAGGTTTATCTACGAAAGCCCATGGGGTACTCCAGAAAA
CCGATTTATATATGCGCAAAATATTGAAGGCAGAGAGGGTGCTTTCCTTT
CGTTGGTTGATTTAGGATTGATTATTGAAAGAAGAGACTCTGAATTTAGA
GCTGAAAGTGGATACTTATTCAATTTAAACACTCAGTATGCTCCTCCAGG
AATTAGTACTCATCATACAGTAGAAAATTCTGTTCTGGCACTTGGTTTTT
TACCATTAACTAAAAAGGTGCCAGTTACTTTAGCAACAAGAGTACGATTT
CAGAATACACTAGGTAAAACCCCATATTGGTTTACGCCTTTTTTAGGAGG
AGGAACTTCGTTAAGAGGGTATATGTATCGTCGTTTTACAAGCGATAATG
CACTTTCATATTCACTTGAATTACGTTCTTGGCTCATTAAGATTCCTTTC
AAAAATATAGAACTTGGAGCGAATGTCTTTGCTGATGGTGGTAAAGTATT
TTCTAACGAATACTATTTAGGAGATACAGACAAACTCGGATATGATGAAG
CTCGGTTTGATTCCTCTTCCTATTATGATTTCAAAACATTTAGGGTTGAC
ATTGGAGGCTTTACTAGACTTCCAATTATTCGAAATGGTGCTACCAATCG
ATTTGATTTGAAAATTGGACTAAGGTTTATCTACGAAAGCCCATGGGGTA
CTCCAGAAAACCGATTTATATATGCGCAAAATATTGAAGGCAGAGAGGGT
GCTTTCCTTTCGTTGGTTGATTTAGGATTGATTATTGAAAGAAGAGACTC
TGAATTTAGAGCTGAAAGTGGATACTTATTCAATTTAAACACTCAGTATG
CTCCTCCAGGAATTAGTACTCATCATACAGTAGAAAATTCTGTTCTGGCA
CTTGGTTTTTTACCATTAACTAAAAAGGTGCCAGTTACTTTAGCAACAAG
AGTACGATTTCAGAATACACTAGGTAAAACCCCATATTGGTTTACGCCTT
TTTTAGGAGGAGGAACTTCGTTAAGAGGGTATATGTATCGTCGTTTTACA
AGCGATAATGCACTTTCATATTCACTTGAATTACGTTCTTGGCTCATTAA
GATTCCTTTCAAAAATATAGAACTTGGAGCGAATGTCTTTGCTGATGGTG
GTAAAGTATTTTCTAACGAA
back to top