mRNA_M-pyrifera_M_contig100749.168.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100749.168.1
Unique NamemRNA_M-pyrifera_M_contig100749.168.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100749.168.1 vs. uniprot
Match: A0A7C1WH59_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WH59_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.560e-12
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 1 
Query:    7 GTWQLMVYEHHTEVLPASAVRGFAQFQEGFMTLIL----HARSLDGDNDMLS-QAGLHRFQITDTGILQTATSMGHSSFNED-AENIWEEPNTPREFRISLNLDDLTLTNPDGSRFIFRRIGAQPYPLEATEKIRAAR 402
            G W L+V++   EV+     RG+AQF +G+ TLIL      R   GD+   +  +G +R++I ++G LQ ++ +G  + +E  A +    P+  RE+ I L  + L L  P G  F FRR+    +     E +R  R
Sbjct:   50 GAWTLLVFDTPEEVVEPEDFRGYAQFHDGYCTLILIGAEPVRDFFGDDTAYTFLSGAYRYRIGESGTLQLSSVVGFDNLDEPGALSFHTGPDATREYEIQLTDNSLRLREPGGDTFEFRRLPKSTFSSHDLESLRLQR 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100749.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C1WH59_9BACT1.560e-1231.88Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100749contigM-pyrifera_M_contig100749:213..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.831172-CDS-M-pyrifera_M_contig100749:212..6111622815504.831172-CDS-M-pyrifera_M_contig100749:212..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100749 213..611 -
1692277441.3646238-CDS-M-pyrifera_M_contig100749:212..6111692277441.3646238-CDS-M-pyrifera_M_contig100749:212..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100749 213..611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.8478832-UTR-M-pyrifera_M_contig100749:611..6321622815504.8478832-UTR-M-pyrifera_M_contig100749:611..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100749 612..632 -
1692277441.3731065-UTR-M-pyrifera_M_contig100749:611..6321692277441.3731065-UTR-M-pyrifera_M_contig100749:611..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100749 612..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100749.168.1prot_M-pyrifera_M_contig100749.168.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100749 213..611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100749.168.1

>prot_M-pyrifera_M_contig100749.168.1 ID=prot_M-pyrifera_M_contig100749.168.1|Name=mRNA_M-pyrifera_M_contig100749.168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MVYEHHTEVLPASAVRGFAQFQEGFMTLILHARSLDGDNDMLSQAGLHRF
QITDTGILQTATSMGHSSFNEDAENIWEEPNTPREFRISLNLDDLTLTNP
DGSRFIFRRIGAQPYPLEATEKIRAARASLRD*
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mRNA from alignment at M-pyrifera_M_contig100749:213..632-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100749.168.1 ID=mRNA_M-pyrifera_M_contig100749.168.1|Name=mRNA_M-pyrifera_M_contig100749.168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig100749:213..632- (Macrocystis pyrifera P11B4 male)
CTCTACGGCACCTGGCAGCTCATGGTCTACGAGCACCACACCGAGGTCCT
GCCCGCCTCGGCCGTGCGCGGCTTCGCGCAGTTCCAGGAAGGCTTCATGA
CCCTGATCCTGCACGCCCGCTCGCTCGACGGCGACAACGACATGCTCTCC
CAGGCCGGCCTGCACCGCTTCCAGATCACGGACACCGGCATCCTCCAGAC
CGCCACCTCGATGGGCCACTCGAGCTTCAACGAGGACGCCGAGAACATCT
GGGAAGAACCCAACACCCCGCGCGAGTTCCGCATCTCCCTGAACCTCGAC
GACCTGACCCTGACGAACCCGGACGGCAGCCGCTTCATCTTCCGCCGCAT
CGGCGCCCAGCCCTACCCCCTGGAGGCGACGGAGAAGATCCGCGCCGCCC
GCGCGAGCCTACGCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100749:213..632-

>mRNA_M-pyrifera_M_contig100749.168.1 ID=mRNA_M-pyrifera_M_contig100749.168.1|Name=mRNA_M-pyrifera_M_contig100749.168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig100749:213..632- (Macrocystis pyrifera P11B4 male)
ATGGTCTACGAGCACCACACCGAGGTCCTGCCCGCCTCGGCCGTGCGCGG
CTTCGCGCAGTTCCAGGAAGGCTTCATGACCCTGATCCTGCACGCCCGCT
CGCTCGACGGCGACAACGACATGCTCTCCCAGGCCGGCCTGCACCGCTTC
CAGATCACGGACACCGGCATCCTCCAGACCGCCACCTCGATGGGCCACTC
GAGCTTCAACGAGGACGCCGAGAACATCTGGGAAGAACCCAACACCCCGC
GCGAGTTCCGCATCTCCCTGAACCTCGACGACCTGACCCTGACGAACCCG
GACGGCAGCCGCTTCATCTTCCGCCGCATCGGCGCCCAGCCCTACCCCCT
GGAGGCGACGGAGAAGATCCGCGCCGCCCGCGCGAGCCTACGCGACTGAA
TGGTCTACGAGCACCACACCGAGGTCCTGCCCGCCTCGGCCGTGCGCGGC
TTCGCGCAGTTCCAGGAAGGCTTCATGACCCTGATCCTGCACGCCCGCTC
GCTCGACGGCGACAACGACATGCTCTCCCAGGCCGGCCTGCACCGCTTCC
AGATCACGGACACCGGCATCCTCCAGACCGCCACCTCGATGGGCCACTCG
AGCTTCAACGAGGACGCCGAGAACATCTGGGAAGAACCCAACACCCCGCG
CGAGTTCCGCATCTCCCTGAACCTCGACGACCTGACCCTGACGAACCCGG
ACGGCAGCCGCTTCATCTTCCGCCGCATCGGCGCCCAGCCCTACCCCCTG
GAGGCGACGGAGAAGATCCGCGCCGCCCGCGCGAGCCTACGCGACTGA
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