mRNA_M-pyrifera_M_contig10071.158.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10071.158.1
Unique NamemRNA_M-pyrifera_M_contig10071.158.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10071.158.1 vs. uniprot
Match: D8LHN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.900e-17
Identity = 86/205 (41.95%), Postives = 106/205 (51.71%), Query Frame = 1 
Query:    1 IQRRWVEVLFLAALAAMTAVLHYARGSPPPSAYFSSGRRTEHSA---------YFNYACLLAVTATAYLASRAATAXXXXXXXXXXXXXXXXRFAARVVLYGPVAAFTLYAAAGRPDLTRHAAVRWMVLNLERNGKEDAAWCARLFALLVCWQAALAVAALACRTLLLAGDAV---GFDESTGEKDLDSGESGEEGQADGEARSG 579
            +++  VE  F+ ALA  TA LHYA G  P    F+S   +EH+A         ++NY                   XXXXXXXXXXXXXXXX   A + L  P      Y  AG P L      RW+  N ERNG+ D  WC RLFALL CWQA LAVA  ACR  +LAG  +     DE++G        SG++ Q +GEAR+G
Sbjct:    5 VEQHCVEAAFVVALAVSTAALHYAHGFSPA---FASLASSEHAAAVAAATNGPFYNYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALALCLPAVLLVCYVGAGYPRLGDTVMARWVAANWERNGERDLRWCGRLFALLACWQAVLAVAVAACR--VLAGLVLLPWTSDEASGRDSKSPSVSGKQEQEEGEARNG 204
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BLAST of mRNA_M-pyrifera_M_contig10071.158.1 vs. uniprot
Match: A0A6H5K3A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.190e-17
Identity = 63/166 (37.95%), Postives = 76/166 (45.78%), Query Frame = 1 
Query:    1 IQRRWVEVLFLAALAAMTAVLHYARGSPPPSAYFSSGRRTEHSA---------YFNYACLLAVTATAYLASRAATAXXXXXXXXXXXXXXXXRFAARVVLYGPVAAFTLYAAAGRPDLTRHAAVRWMVLNLERNGKEDAAWCARLFALLVCWQAALAVAALACRTL 471
            +++  VE  F+ ALA  TA LHYA G  P    F+S   +EH+A         ++NY CLLA  A           X               R AA  +    V     Y  AG P L      RW+  N ERNG+ D  WC RLFALL CWQA LA+A  ACR L
Sbjct:    9 VEQHCVEAAFVVALAISTAALHYAHGFSPA---FASLASSEHAAAVAAATNAPFYNYVCLLAAAAXXXXXXXXXXXXAPVAALPKSSQGTAARRAALALCLLAVL-LVCYVGAGYPRLGDTVMARWVAANWERNGERDLRWCGRLFALLACWQALLAIAVGACRVL 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10071.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHN3_ECTSI2.900e-1741.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3A2_9PHAE4.190e-1737.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10071contigM-pyrifera_M_contig10071:7121..7888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003760.1
Exons2
Model size603
Cds size603
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.3508558-CDS-M-pyrifera_M_contig10071:7120..72551622815504.3508558-CDS-M-pyrifera_M_contig10071:7120..7255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10071 7121..7255 -
1692277441.1071787-CDS-M-pyrifera_M_contig10071:7120..72551692277441.1071787-CDS-M-pyrifera_M_contig10071:7120..7255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10071 7121..7255 -
1622815504.3624265-CDS-M-pyrifera_M_contig10071:7420..78881622815504.3624265-CDS-M-pyrifera_M_contig10071:7420..7888Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10071 7421..7888 -
1692277441.124384-CDS-M-pyrifera_M_contig10071:7420..78881692277441.124384-CDS-M-pyrifera_M_contig10071:7420..7888Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10071 7421..7888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10071.158.1prot_M-pyrifera_M_contig10071.158.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10071 7121..7888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10071.158.1

>prot_M-pyrifera_M_contig10071.158.1 ID=prot_M-pyrifera_M_contig10071.158.1|Name=mRNA_M-pyrifera_M_contig10071.158.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
IQRRWVEVLFLAALAAMTAVLHYARGSPPPSAYFSSGRRTEHSAYFNYAC
LLAVTATAYLASRAATAAVSSAIPASVKASASARFAARVVLYGPVAAFTL
YAAAGRPDLTRHAAVRWMVLNLERNGKEDAAWCARLFALLVCWQAALAVA
ALACRTLLLAGDAVGFDESTGEKDLDSGESGEEGQADGEARSGMMAPALG
*
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mRNA from alignment at M-pyrifera_M_contig10071:7121..7888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10071.158.1 ID=mRNA_M-pyrifera_M_contig10071.158.1|Name=mRNA_M-pyrifera_M_contig10071.158.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig10071:7121..7888- (Macrocystis pyrifera P11B4 male)
ATTCAACGACGCTGGGTGGAGGTGCTCTTCCTCGCAGCCCTGGCGGCGAT
GACCGCGGTCCTCCACTACGCCCGCGGCTCGCCCCCCCCCTCCGCGTACT
TCTCGTCCGGCAGGCGGACCGAACACAGCGCGTACTTCAACTACGCCTGC
CTGCTCGCGGTCACCGCTACCGCCTATCTCGCCTCGAGGGCGGCAACCGC
AGCCGTCTCATCGGCGATCCCGGCCTCGGTTAAGGCTAGCGCCTCTGCGC
GGTTCGCGGCGCGGGTGGTGCTGTACGGGCCGGTGGCGGCGTTCACCCTG
TACGCGGCGGCGGGCCGCCCCGACCTTACCAGACACGCGGCGGTGCGGTG
GATGGTACTCAACTTGGAGCGCAACGGCAAAGAAGACGCCGCTTGGTGCG
CTCGACTGTTCGCGCTGCTGGTCTGCTGGCAGGCCGCGCTCGCGGTGGCT
GCGCTGGCTTGCAGGACGGTGACGAGGGGCTTGGCGAGCTTGCGCACGGC
GGGGGTGGATGCGAGGGGTAGCGGTGGCGGTCGTGCTCGTGGTGGTCGTG
GTGATGACGTAGCTGCTGCTGCTGCGGCCGCTTCTGCTGCTGCTTTTGCT
GCCGCTGCTGCTGCCTCTGCTGCTGCCGAAAAGCTGCTGCTTGCTGGCGA
CGCGGTGGGTTTCGACGAGAGCACAGGCGAGAAGGATCTTGACAGCGGAG
AGAGCGGCGAGGAAGGGCAGGCGGACGGCGAAGCGCGCTCGGGAATGATG
GCGCCTGCACTAGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10071:7121..7888-

>mRNA_M-pyrifera_M_contig10071.158.1 ID=mRNA_M-pyrifera_M_contig10071.158.1|Name=mRNA_M-pyrifera_M_contig10071.158.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig10071:7121..7888- (Macrocystis pyrifera P11B4 male)
ATTCAACGACGCTGGGTGGAGGTGCTCTTCCTCGCAGCCCTGGCGGCGAT
GACCGCGGTCCTCCACTACGCCCGCGGCTCGCCCCCCCCCTCCGCGTACT
TCTCGTCCGGCAGGCGGACCGAACACAGCGCGTACTTCAACTACGCCTGC
CTGCTCGCGGTCACCGCTACCGCCTATCTCGCCTCGAGGGCGGCAACCGC
AGCCGTCTCATCGGCGATCCCGGCCTCGGTTAAGGCTAGCGCCTCTGCGC
GGTTCGCGGCGCGGGTGGTGCTGTACGGGCCGGTGGCGGCGTTCACCCTG
TACGCGGCGGCGGGCCGCCCCGACCTTACCAGACACGCGGCGGTGCGGTG
GATGGTACTCAACTTGGAGCGCAACGGCAAAGAAGACGCCGCTTGGTGCG
CTCGACTGTTCGCGCTGCTGGTCTGCTGGCAGGCCGCGCTCGCGGTGGCT
GCGCTGGCTTGCAGGACGATTCAACGACGCTGGGTGGAGGTGCTCTTCCT
CGCAGCCCTGGCGGCGATGACCGCGGTCCTCCACTACGCCCGCGGCTCGC
CCCCCCCCTCCGCGTACTTCTCGTCCGGCAGGCGGACCGAACACAGCGCG
TACTTCAACTACGCCTGCCTGCTCGCGGTCACCGCTACCGCCTATCTCGC
CTCGAGGGCGGCAACCGCAGCCGTCTCATCGGCGATCCCGGCCTCGGTTA
AGGCTAGCGCCTCTGCGCGGTTCGCGGCGCGGGTGGTGCTGTACGGGCCG
GTGGCGGCGTTCACCCTGTACGCGGCGGCGGGCCGCCCCGACCTTACCAG
ACACGCGGCGGTGCGGTGGATGGTACTCAACTTGGAGCGCAACGGCAAAG
AAGACGCCGCTTGGTGCGCTCGACTGTTCGCGCTGCTGGTCTGCTGGCAG
GCCGCGCTCGCGGTGGCTGCGCTGGCTTGCAGGACGCTGCTGCTTGCTGG
CGACGCGGTGGGTTTCGACGAGAGCACAGGCGAGAAGGATCTTGACAGCG
GAGAGAGCGGCGAGGAAGGGCAGGCGGACGGCGAAGCGCGCTCGGGAATG
ATGGCGCCTGCACTAGGGTAGCTGCTGCTTGCTGGCGACGCGGTGGGTTT
CGACGAGAGCACAGGCGAGAAGGATCTTGACAGCGGAGAGAGCGGCGAGG
AAGGGCAGGCGGACGGCGAAGCGCGCTCGGGAATGATGGCGCCTGCACTA
GGGTAG
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