mRNA_M-pyrifera_M_contig100664.151.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100664.151.1
Unique NamemRNA_M-pyrifera_M_contig100664.151.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: A0A2D9JAA7_9BACT (PSRT domain-containing protein n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D9JAA7_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.380e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = -3 
Query:   47 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQKLNDL 172
            HARPSPSRT  RRRSTSP+TSFRER   WKS  +R+++L+DL
Sbjct:    6 HARPSPSRTPARRRSTSPETSFRERYALWKSAEKRHRRLHDL 47
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: Q7UJQ4_RHOBA (Uncharacterized protein n=1 Tax=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) TaxID=243090 RepID=Q7UJQ4_RHOBA)

HSP 1 Score: 60.1 bits (144), Expect = 4.000e-10
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 FAFSSASTTSPS--RGCRGRSVFDTARERFSTCRTSPETKFGERSSDAVRAYARVRAGHGE 177
            FA +S S T P+  R CR    FD+A  + ST RTSPET F ERSSDAV+AYARVRA HG+
Sbjct:   61 FAATSTSPTGPNFWRACR---FFDSAFRQISTWRTSPETSFRERSSDAVQAYARVRAEHGK 118
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: UPI00139243F9 (hypothetical protein n=1 Tax=Rhodopirellula baltica TaxID=265606 RepID=UPI00139243F9)

HSP 1 Score: 58.5 bits (140), Expect = 7.040e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = -3 
Query:   59 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQK 172
            HARPSPSRT ERRRSTSPQTSFRER   W+S  ER+QK
Sbjct:    6 HARPSPSRTPERRRSTSPQTSFRERYAVWESAEERHQK 43
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: UPI001F3977A3 (hypothetical protein n=1 Tax=Rhodopirellula europaea TaxID=1263866 RepID=UPI001F3977A3)

HSP 1 Score: 58.2 bits (139), Expect = 1.070e-9
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = -3 
Query:   23 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQKLNDLCSRGRVKW 172
            HARPSPSRT  RRRSTSP+TSFRER   WKS  +R+QK     +R R++W
Sbjct:    6 HARPSPSRTPARRRSTSPETSFRERYAMWKSAEKRHQKT----ARPRMRW 51
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: UPI001F40FFBD (hypothetical protein n=1 Tax=Rhodopirellula europaea TaxID=1263866 RepID=UPI001F40FFBD)

HSP 1 Score: 57.8 bits (138), Expect = 1.560e-9
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = -3 
Query:   29 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQKLNDLCSRGRV 172
            HARPSPSR+ ERRRSTSP+TSFRER   WKS  +R+QK   +   GR 
Sbjct:   17 HARPSPSRSPERRRSTSPETSFRERYAVWKSAEKRHQKKCTISELGRA 64
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: UPI001E49DE74 (hypothetical protein n=3 Tax=Rhodopirellula TaxID=265488 RepID=UPI001E49DE74)

HSP 1 Score: 57.4 bits (137), Expect = 1.960e-9
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = -3 
Query:   47 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQKLNDL 172
            HARPSPSRT ERRRSTSP TSFRER   WKS  +R QK + L
Sbjct:   11 HARPSPSRTPERRRSTSPDTSFRERYAMWKSAEKRNQKSSPL 52
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: UPI0009DAE637 (hypothetical protein n=1 Tax=Rhodopirellula europaea TaxID=1263866 RepID=UPI0009DAE637)

HSP 1 Score: 56.2 bits (134), Expect = 3.910e-9
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = -3 
Query:   59 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQK 172
            HARPSPS T ERRRSTSPQTSFRER   WK   +RYQK
Sbjct:   25 HARPSPSLTPERRRSTSPQTSFRERYAMWKFAEKRYQK 62
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: A0A2G1W8B2_9BACT (PSRT domain-containing protein n=2 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W8B2_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.550e-9
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = -3 
Query:   59 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQK 172
            HARPSPSRT E RRSTSPQTSFRER   WK   +RYQK
Sbjct:   25 HARPSPSRTPEWRRSTSPQTSFRERYAMWKFAEKRYQK 62
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: M5S8C2_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula europaea SH398 TaxID=1263868 RepID=M5S8C2_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-8
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 LPHLSRNEVWGEVERRRSSVREGEGRAW 173
            + HLSRNEVWGEVERRRS VREGEGRAW
Sbjct:    1 MSHLSRNEVWGEVERRRSGVREGEGRAW 28
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BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Match: A0A2G1VXE1_9BACT (PSRT domain-containing protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1VXE1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-8
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = -3 
Query:   59 HARPSPSRTLERRRSTSPQTSFRERCGRWKSVHERYQK 172
            HARPSPSRT ERRRSTSPQTSFRERC   KS  +R+ K
Sbjct:   30 HARPSPSRTPERRRSTSPQTSFRERCAVCKSAEKRHLK 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100664.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9JAA7_9BACT1.380e-1069.05PSRT domain-containing protein n=1 Tax=Rhodopirell... [more]
Q7UJQ4_RHOBA4.000e-1060.66Uncharacterized protein n=1 Tax=Rhodopirellula bal... [more]
UPI00139243F97.040e-1078.95hypothetical protein n=1 Tax=Rhodopirellula baltic... [more]
UPI001F3977A31.070e-962.00hypothetical protein n=1 Tax=Rhodopirellula europa... [more]
UPI001F40FFBD1.560e-962.50hypothetical protein n=1 Tax=Rhodopirellula europa... [more]
UPI001E49DE741.960e-971.43hypothetical protein n=3 Tax=Rhodopirellula TaxID=... [more]
UPI0009DAE6373.910e-976.32hypothetical protein n=1 Tax=Rhodopirellula europa... [more]
A0A2G1W8B2_9BACT5.550e-976.32PSRT domain-containing protein n=2 Tax=Rhodopirell... [more]
M5S8C2_9BACT1.270e-889.29Uncharacterized protein n=1 Tax=Rhodopirellula eur... [more]
A0A2G1VXE1_9BACT1.390e-876.32PSRT domain-containing protein n=1 Tax=Rhodopirell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100664contigM-pyrifera_M_contig100664:471..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.7554903-CDS-M-pyrifera_M_contig100664:470..6471622815503.7554903-CDS-M-pyrifera_M_contig100664:470..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100664 471..647 +
1692277440.995548-CDS-M-pyrifera_M_contig100664:470..6471692277440.995548-CDS-M-pyrifera_M_contig100664:470..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100664 471..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100664.151.1prot_M-pyrifera_M_contig100664.151.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100664 471..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100664.151.1

>prot_M-pyrifera_M_contig100664.151.1 ID=prot_M-pyrifera_M_contig100664.151.1|Name=mRNA_M-pyrifera_M_contig100664.151.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
FAFSSASTTSPSRGCRGRSVFDTARERFSTCRTSPETKFGERSSDAVRAY
ARVRAGHGE
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mRNA from alignment at M-pyrifera_M_contig100664:471..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100664.151.1 ID=mRNA_M-pyrifera_M_contig100664.151.1|Name=mRNA_M-pyrifera_M_contig100664.151.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig100664:471..647+ (Macrocystis pyrifera P11B4 male)
TTCGCCTTCTCGTCTGCTAGCACCACTTCACCCTCCCGCGGCTGCAGAGG
TCGTTCAGTTTTTGATACCGCTCGTGAACGCTTTTCCACCTGCCGCACCT
CTCCCGAAACGAAGTTTGGGGAGAGGTCGAGCGACGCCGTTCGAGCGTAC
GCGAGGGTGAGGGCCGGGCATGGGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100664:471..647+

>mRNA_M-pyrifera_M_contig100664.151.1 ID=mRNA_M-pyrifera_M_contig100664.151.1|Name=mRNA_M-pyrifera_M_contig100664.151.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig100664:471..647+ (Macrocystis pyrifera P11B4 male)
TTCGCCTTCTCGTCTGCTAGCACCACTTCACCCTCCCGCGGCTGCAGAGG
TCGTTCAGTTTTTGATACCGCTCGTGAACGCTTTTCCACCTGCCGCACCT
CTCCCGAAACGAAGTTTGGGGAGAGGTCGAGCGACGCCGTTCGAGCGTAC
GCGAGGGTGAGGGCCGGGCATGGGGAGTTCGCCTTCTCGTCTGCTAGCAC
CACTTCACCCTCCCGCGGCTGCAGAGGTCGTTCAGTTTTTGATACCGCTC
GTGAACGCTTTTCCACCTGCCGCACCTCTCCCGAAACGAAGTTTGGGGAG
AGGTCGAGCGACGCCGTTCGAGCGTACGCGAGGGTGAGGGCCGGGCATGG
GGAG
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