mRNA_M-pyrifera_M_contig100658.149.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100658.149.1
Unique NamemRNA_M-pyrifera_M_contig100658.149.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A5A8CZQ6_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZQ6_CAFRO)

HSP 1 Score: 79.0 bits (193), Expect = 4.900e-17
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   16 LRQRKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRC 192
            ++ R+R CR   CG +P  EDDNCV++CVS  C+ +VYG E LEPGEVDL R ++F+ C
Sbjct:   51 IQSRRRNCRSQVCGSIPVHEDDNCVNECVSPRCYQEVYGAEPLEPGEVDLVRWQQFSSC 109          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A7S4C0L6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0L6_CHRCT)

HSP 1 Score: 69.3 bits (168), Expect = 2.850e-13
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   28 KRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRC 192
            KR C R  C  + T + DNCV KC S  C++ +YGEEELEPGEVD +R R+F  C
Sbjct:   52 KRECERTTCATVHTDDFDNCVLKCQSPECYEDIYGEEELEPGEVDRDRSRKFQSC 106          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A7S2GQ80_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GQ80_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-12
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   25 RKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRCAMDEMR 210
            RKR C    C  +   +  NC+ +C S AC+ ++Y +EELEPGEVD++R R F +C  DE R
Sbjct:   53 RKRDCEMTQCADVSVDDQPNCILRCQSEACYIRIYADEELEPGEVDMQRQRAFTKCMNDEAR 114          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A6S9GZX5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GZX5_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 2.390e-11
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   13 SLRQRKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRC 192
            + R +K  C R ACGH+   E  NC++KC+S+ C+++VY  E LE GEVD  R + F  C
Sbjct:   47 NFRIKKGDCERVACGHMIVDEAQNCINKCISAECYEEVYAHEPLEDGEVDASRYKRFQAC 106          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A7S0L3E4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L3E4_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 2.430e-11
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   28 KRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRC 192
            KR C R  C      + +NCV KC S  C++QVYG +ELEPGEVD ER R F+ C
Sbjct:   38 KRDCERVTCKGAHEDDQENCVLKCQSPECYEQVYGADELEPGEVDRERSRRFSSC 92          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A7S2TYE2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYE2_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 7.500e-11
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   16 LRQRKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRCAMDE 204
            + +R+  C    C  L   ED NC  +CVS  CF +VYG  ELEPGE+D +R R+F RCA +E
Sbjct:   32 VNKRRNECEMVTCRGLEE-EDPNCTPRCVSEHCFAEVYGGNELEPGEIDTKRSRQFTRCARNE 93          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: R1FUY2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FUY2_EMIHU)

HSP 1 Score: 64.3 bits (155), Expect = 1.880e-10
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   25 RKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRCAMDEMRKE 216
            ++R C R  C  +   E  NCV +C S  C+ +VYG EELEPGE+D +R ++FNRC   E R++
Sbjct:   28 KRRECERGECRGVHDDERTNCVLRCQSQHCYAEVYGAEELEPGEIDTKRQQKFNRCLTTEERQQ 91          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A0G4GQ10_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ10_9ALVE)

HSP 1 Score: 61.6 bits (148), Expect = 1.900e-10
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1
Query:   19 RQRKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRCAMDEM 207
            R R+  C  N C  +P  E+D+CV KC+S  C+  ++ E  LEPGEVD +R  +F  C   E+
Sbjct:   38 RARRNKCVMNECSDIPEEENDDCVDKCLSPQCYQDIFAENPLEPGEVDRKRRNDFMNCVKKEV 100          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A7S0JBQ6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JBQ6_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 2.010e-10
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   28 KRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRC 192
            K+ C R  C  +   + +NCV KC S  C++Q+Y   ELEPGEVD +R R+FN C
Sbjct:   39 KKECERTTCRGVHEDDQENCVLKCQSPECYEQIYAGNELEPGEVDRDRSRKFNTC 93          
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Match: A0A024U4E0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4E0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.070e-10
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   19 RQRKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEPGEVDLERMREFNRCAMDEMRKEA 219
            R +K+ C    C HL  + + NCVH+C+S+AC+ +VY  E LE GE+D  R  +F  C  ++ R  A
Sbjct:   33 RMQKKGCEMYECSHLNEWTNMNCVHECISAACYAEVYASEPLEDGEIDEYRYHKFLSCIRNDYRARA 99          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100658.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CZQ6_CAFRO4.900e-1754.24Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S4C0L6_CHRCT2.850e-1354.55Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2GQ80_9EUKA4.290e-1245.16Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A6S9GZX5_HETAK2.390e-1145.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0L3E4_9EUKA2.430e-1152.73Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2TYE2_9EUKA7.500e-1147.62Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
R1FUY2_EMIHU1.880e-1045.31Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0G4GQ10_9ALVE1.900e-1041.27Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0JBQ6_9EUKA2.010e-1047.27Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A024U4E0_9STRA5.070e-1040.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100658contigM-pyrifera_M_contig100658:118..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.677582-CDS-M-pyrifera_M_contig100658:117..2581622815503.677582-CDS-M-pyrifera_M_contig100658:117..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100658 118..258 +
1692277440.959816-CDS-M-pyrifera_M_contig100658:117..2581692277440.959816-CDS-M-pyrifera_M_contig100658:117..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100658 118..258 +
1622815503.6900501-CDS-M-pyrifera_M_contig100658:354..4321622815503.6900501-CDS-M-pyrifera_M_contig100658:354..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100658 355..432 +
1692277440.9692876-CDS-M-pyrifera_M_contig100658:354..4321692277440.9692876-CDS-M-pyrifera_M_contig100658:354..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100658 355..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100658.149.1prot_M-pyrifera_M_contig100658.149.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100658 118..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100658.149.1

>prot_M-pyrifera_M_contig100658.149.1 ID=prot_M-pyrifera_M_contig100658.149.1|Name=mRNA_M-pyrifera_M_contig100658.149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
QLTASLRQRKRTCRRNACGHLPTFEDDNCVHKCVSSACFDQVYGEEELEP
GEVDLERMREFNRCAMDEMRKEA
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mRNA from alignment at M-pyrifera_M_contig100658:118..432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100658.149.1 ID=mRNA_M-pyrifera_M_contig100658.149.1|Name=mRNA_M-pyrifera_M_contig100658.149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig100658:118..432+ (Macrocystis pyrifera P11B4 male)
CAGTTGACTGCAAGCCTGCGACAGAGGAAGCGAACATGCCGCCGCAACGC CTGTGGACACTTGCCAACTTTTGAGGACGACAATTGCGTCCACAAATGCG TCTCTTCGGCCTGTTTCGACCAAGTTTACGGAGAAGAAGAAGTAATAGAG GTTGGGGAATTGGGTGGTTTGGGGGAATATTGTGGTATGGTGCCATTTTC TTGTTTTTCCTCTTTTTTTCCTTTTTTCTCTCATCAGCTGGAACCTGGGG AAGTTGATTTGGAAAGGATGCGAGAATTTAATCGTTGTGCAATGGACGAA ATGCGAAAAGAAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100658:118..432+

>mRNA_M-pyrifera_M_contig100658.149.1 ID=mRNA_M-pyrifera_M_contig100658.149.1|Name=mRNA_M-pyrifera_M_contig100658.149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig100658:118..432+ (Macrocystis pyrifera P11B4 male)
CAGTTGACTGCAAGCCTGCGACAGAGGAAGCGAACATGCCGCCGCAACGC
CTGTGGACACTTGCCAACTTTTGAGGACGACAATTGCGTCCACAAATGCG
TCTCTTCGGCCTGTTTCGACCAAGTTTACGGAGAAGAAGAACAGTTGACT
GCAAGCCTGCGACAGAGGAAGCGAACATGCCGCCGCAACGCCTGTGGACA
CTTGCCAACTTTTGAGGACGACAATTGCGTCCACAAATGCGTCTCTTCGG
CCTGTTTCGACCAAGTTTACGGAGAAGAAGAACTGGAACCTGGGGAAGTT
GATTTGGAAAGGATGCGAGAATTTAATCGTTGTGCAATGGACGAAATGCG
AAAAGAAGCCCTGGAACCTGGGGAAGTTGATTTGGAAAGGATGCGAGAAT
TTAATCGTTGTGCAATGGACGAAATGCGAAAAGAAGCC
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