mRNA_M-pyrifera_M_contig100644.146.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100644.146.1
Unique NamemRNA_M-pyrifera_M_contig100644.146.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A6A0HEY4_HYAAZ (Uncharacterized protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0HEY4_HYAAZ)

HSP 1 Score: 127 bits (320), Expect = 8.880e-35
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEA-VMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSF 369
            VSEL S    V+LVSGGF+ LI PVA+ L IPRE+V AN LQ+  +G Y+GFD SQPT+ SGGKA+ +  +L     G E  VM+GDG+TD EA PPA AFIGFGG V R+AV+EKA L++ SF
Sbjct:   49 VSELQSRETDVYLVSGGFMSLISPVAEKLGIPRENVIANRLQFYFDGQYAGFDESQPTSRSGGKAEVVAALLRKH--GYECLVMVGDGMTDMEACPPAHAFIGFGGNVEREAVKEKAPLYVTSF 170          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A8B7NG01_HYAAZ (Phosphoserine phosphatase n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NG01_HYAAZ)

HSP 1 Score: 127 bits (320), Expect = 9.420e-34
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEA-VMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSF 369
            VSEL S    V+LVSGGF+ LI PVA+ L IPRE+V AN LQ+  +G Y+GFD SQPT+ SGGKA+ +  +L     G E  VM+GDG+TD EA PPA AFIGFGG V R+AV+EKA L++ SF
Sbjct:  140 VSELQSRETDVYLVSGGFMSLISPVAEKLGIPRENVIANRLQFYFDGQYAGFDESQPTSRSGGKAEVVAALLRKH--GYECLVMVGDGMTDMEACPPAHAFIGFGGNVEREAVKEKAPLYVTSF 261          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: F2UF47_SALR5 (Phosphoserine phosphatase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF47_SALR5)

HSP 1 Score: 125 bits (315), Expect = 1.750e-33
Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEAVMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSF 369
            V +LH+  KKV+L+SGG  +L+ PVADALSIPR+ +FANVL +   G Y+ FD +QPT+ SGGK +AI  I    P     VMIGDGVTD EARPPA  FIGFGG V R+ V+   D F   F
Sbjct:   96 VEQLHALDKKVYLISGGIRDLVAPVADALSIPRDRIFANVLHFNDAGEYTHFDETQPTSRSGGKPEAIHAIK-QRPGHDRVVMIGDGVTDMEARPPADLFIGFGGNVVREKVQAGCDFFATDF 217          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A8J2WJK3_9CRUS (Phosphoserine phosphatase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WJK3_9CRUS)

HSP 1 Score: 125 bits (314), Expect = 2.470e-33
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEA-VMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSFKDAIEMV 390
            +  LH   KK++L+SGGF  LIHPVAD L IP+E+++AN L++  +G Y+GFD  QPT+ SGGK K I+ I   E  G    VMIGDGVTD EA PPA AFIGFGG V R+ V+  A  F+  F+D I ++
Sbjct:   95 IKTLHLLNKKLYLISGGFESLIHPVADYLGIPKENIYANKLKFYHDGRYAGFDEDQPTSRSGGKGKVIQTIR--EKFGHSIIVMIGDGVTDMEACPPADAFIGFGGNVEREVVKSNAGWFVTDFQDLINVL 223          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A835ZG36_9STRA (Phosphoserine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG36_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.530e-33
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   10 LHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEAVMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSFKDAIEMVR 393
            LH  G  V+LVSGGF  +I+PVA  L IP   V+AN + Y  +G+Y GFD  +PT+  GGK  A+ + L ++      VM+GDGVTD +ARPPA+AFIG+GGV  R AV   AD +++ F+D IE+VR
Sbjct:  136 LHERGTDVYLVSGGFRSMIYPVAKVLGIPESRVYANTIMYNADGSYQGFDEQEPTSRDGGK-PAVVKALKAQHGYAPVVMVGDGVTDMQARPPAEAFIGYGGVAVRDAVRRGADWYVYDFQDMIEVVR 262          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A059LIM5_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LIM5_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 1.760e-31
Identity = 67/135 (49.63%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEA-VMIGDGVTDAEARPPAKA--FIGFGGVVHRKAVEEKADLFLHSFKDAIEMVRA 396
            V+ LHS G +V+LVSGGF  +IHP+ADAL+IP+ +VFAN L +  +G+YSGFD  + T+ SGGK +A+  + A +  G E  VM+GDG TDAEAR P  A  F+G+GGVV+R+AV +KAD ++   +  I+ + +
Sbjct:   82 VALLHSRGVQVYLVSGGFRLVIHPIADALNIPQSNVFANTLLFNTDGSYSGFDPVEFTSRSGGKREAVAAVAARD--GHETIVMVGDGATDAEARAPGAAALFVGYGGVVYREAVAQKADWYITRVQQLIDALES 214          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A482RX36_9ARCH (Phosphoserine phosphatase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX36_9ARCH)

HSP 1 Score: 120 bits (302), Expect = 1.780e-31
Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEAVMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSFKDAIEMVR 393
            VS LH   K V+LVSGGF ++I PVAD L IP   ++AN L +   GA+ GFD  + T   GGK +A+E  LAS    +  VM+GDGVTD +A+PPAK F+GFGGVV R+ VE+ AD F+  FK+ +E+++
Sbjct:   98 VSLLHRQNKVVYLVSGGFRQMIEPVADKLLIPSHRIYANNLLFDSAGAFKGFDEQEFTCRDGGKRRAVEH-LASAFGYSNIVMVGDGVTDMQAKPPAKIFVGFGGVVVREKVEQGADWFIKDFKNLLEVLK 227          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: UPI0007719746 (phosphoserine phosphatase isoform X1 n=2 Tax=Cephus cinctus TaxID=211228 RepID=UPI0007719746)

HSP 1 Score: 120 bits (301), Expect = 4.370e-31
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEAVMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSFKDAIEMVRA 396
            V  LHS GK+V+LVSGGF  LI PVAD L IPRE++ AN L++   G Y+GFD ++PT+ SGGKA+ I RIL  E      + IGDG TD EA PPA AFIGFGG + R++V+ +A  F+  F +  + ++A
Sbjct:  125 VDTLHSNGKQVYLVSGGFRCLIAPVADLLKIPRENIHANRLKFYFTGEYAGFDENEPTSRSGGKAEVI-RILKQEKQFKNIIHIGDGATDLEACPPASAFIGFGGNIVRESVKSRAKWFVTDFNELAKALKA 255          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A7S2BD67_9STRA (Phosphoserine phosphatase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BD67_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.580e-31
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEAV-MIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSFKDAIEMVR 393
            V  LH+ G  V+LVSGGF  +I+PVAD L I  + VFAN + +   G ++GFDAS+PT+A GGK K I  +   E  G + V M+GDG TD +ARPPA AF+GFGG+  R+ V+E AD F+  F++ +++VR
Sbjct:  128 VELLHARGTAVYLVSGGFRLMINPVADMLDISHDRVFANTILFDEAGNFTGFDASEPTSADGGKPKVIGAL--KEQHGYDPVIMVGDGATDLQARPPADAFVGFGGIAVREVVKEGADWFVEDFEEVLKLVR 257          
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Match: A0A6P4YGB4_BRABE (Phosphoserine phosphatase n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YGB4_BRABE)

HSP 1 Score: 119 bits (298), Expect = 5.940e-31
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYSGFDASQPTAASGGKAKAIERILASEPPGTEAVMIGDGVTDAEARPPAKAFIGFGGVVHRKAVEEKADLFLHSFKDAIEMVRA 396
            +S L   G  V+LVSGGF  +I P+A  + +P E++FAN L +  +G Y  FD  QPT+ASGGKAK ++ +L         V++GDG+TDAEA PPA+AFIGFGG V RK+V+EKA  F+ SF +  E +++
Sbjct:   95 ISLLQKRGTAVYLVSGGFFRIIEPIAQLVGVPTENIFANKLLFNDQGEYVTFDTDQPTSASGGKAKVVQ-LLKDTHGYKRVVVVGDGLTDAEACPPAEAFIGFGGNVLRKSVQEKAKWFVTSFTELAEPLQS 225          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100644.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A0HEY4_HYAAZ8.880e-3558.87Uncharacterized protein n=1 Tax=Hyalella azteca Ta... [more]
A0A8B7NG01_HYAAZ9.420e-3458.87Phosphoserine phosphatase n=2 Tax=Hyalella azteca ... [more]
F2UF47_SALR51.750e-3355.28Phosphoserine phosphatase n=1 Tax=Salpingoeca rose... [more]
A0A8J2WJK3_9CRUS2.470e-3352.67Phosphoserine phosphatase n=1 Tax=Daphnia galeata ... [more]
A0A835ZG36_9STRA9.530e-3350.00Phosphoserine phosphatase n=1 Tax=Tribonema minus ... [more]
A0A059LIM5_9CHLO1.760e-3149.63Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
A0A482RX36_9ARCH1.780e-3150.38Phosphoserine phosphatase n=1 Tax=archaeon TaxID=1... [more]
UPI00077197464.370e-3151.52phosphoserine phosphatase isoform X1 n=2 Tax=Cephu... [more]
A0A7S2BD67_9STRA4.580e-3149.24Phosphoserine phosphatase n=1 Tax=Florenciella par... [more]
A0A6P4YGB4_BRABE5.940e-3148.48Phosphoserine phosphatase n=5 Tax=Branchiostoma Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100644contigM-pyrifera_M_contig100644:1..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score130.2
Seed ortholog evalue7.3e-28
Seed eggNOG ortholog946362.XP_004992300.1
Preferred namePSPH
KEGG rclassRC00017
KEGG koko:K01079
KEGG ReactionR00582
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004647,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007422,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008049,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016043,GO:0016053,GO:0016311,GO:0016545,GO:0016787,GO:0016788,GO:0016791,GO:0019098,GO:0019752,GO:0019953,GO:0022008,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031175,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033574,GO:0033993,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042578,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045433,GO:0045471,GO:0046394,GO:0046677,GO:0046872,GO:0046983,GO:0048065,GO:0048149,GO:0048468,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0051704,GO:0060179,GO:0061564,GO:0071704,GO:0071840,GO:0097305,GO:0097458,GO:0097485,GO:0120025,GO:0120036,GO:0120039,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901654,GO:1901700
EggNOG free text desc.phosphoserine phosphatase
EggNOG OGs38F2C@33154,COG0560@1,KOG1615@2759
EC3.1.3.3
COG Functional cat.E
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.5469544-CDS-M-pyrifera_M_contig100644:0..4021622815503.5469544-CDS-M-pyrifera_M_contig100644:0..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100644 1..402 +
1692277440.9234257-CDS-M-pyrifera_M_contig100644:0..4021692277440.9234257-CDS-M-pyrifera_M_contig100644:0..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100644 1..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100644.146.1prot_M-pyrifera_M_contig100644.146.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100644 1..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100644.146.1

>prot_M-pyrifera_M_contig100644.146.1 ID=prot_M-pyrifera_M_contig100644.146.1|Name=mRNA_M-pyrifera_M_contig100644.146.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
VSELHSCGKKVFLVSGGFVELIHPVADALSIPREHVFANVLQYTPEGAYS
GFDASQPTAASGGKAKAIERILASEPPGTEAVMIGDGVTDAEARPPAKAF
IGFGGVVHRKAVEEKADLFLHSFKDAIEMVRAE*
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mRNA from alignment at M-pyrifera_M_contig100644:1..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100644.146.1 ID=mRNA_M-pyrifera_M_contig100644.146.1|Name=mRNA_M-pyrifera_M_contig100644.146.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig100644:1..402+ (Macrocystis pyrifera P11B4 male)
GTTTCGGAGTTGCATTCTTGCGGGAAGAAGGTGTTCCTGGTGTCTGGGGG TTTTGTGGAGCTGATCCACCCCGTGGCAGACGCGCTGTCGATTCCACGAG AGCACGTGTTCGCAAACGTGCTGCAATACACTCCAGAAGGCGCCTATAGC GGATTCGATGCATCACAGCCCACTGCAGCCTCAGGAGGCAAGGCCAAGGC CATCGAGCGCATCCTCGCCAGCGAGCCACCCGGCACAGAGGCCGTCATGA TCGGAGATGGGGTCACAGACGCAGAAGCACGACCCCCAGCAAAGGCCTTC ATCGGGTTTGGAGGGGTTGTGCACAGGAAAGCCGTTGAGGAGAAGGCAGA CCTCTTCCTCCACTCCTTCAAAGACGCAATCGAAATGGTCCGCGCTGAAT AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100644:1..402+

>mRNA_M-pyrifera_M_contig100644.146.1 ID=mRNA_M-pyrifera_M_contig100644.146.1|Name=mRNA_M-pyrifera_M_contig100644.146.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig100644:1..402+ (Macrocystis pyrifera P11B4 male)
GTTTCGGAGTTGCATTCTTGCGGGAAGAAGGTGTTCCTGGTGTCTGGGGG
TTTTGTGGAGCTGATCCACCCCGTGGCAGACGCGCTGTCGATTCCACGAG
AGCACGTGTTCGCAAACGTGCTGCAATACACTCCAGAAGGCGCCTATAGC
GGATTCGATGCATCACAGCCCACTGCAGCCTCAGGAGGCAAGGCCAAGGC
CATCGAGCGCATCCTCGCCAGCGAGCCACCCGGCACAGAGGCCGTCATGA
TCGGAGATGGGGTCACAGACGCAGAAGCACGACCCCCAGCAAAGGCCTTC
ATCGGGTTTGGAGGGGTTGTGCACAGGAAAGCCGTTGAGGAGAAGGCAGA
CCTCTTCCTCCACTCCTTCAAAGACGCAATCGAAATGGTCCGCGCTGAAT
AAGTTTCGGAGTTGCATTCTTGCGGGAAGAAGGTGTTCCTGGTGTCTGGG
GGTTTTGTGGAGCTGATCCACCCCGTGGCAGACGCGCTGTCGATTCCACG
AGAGCACGTGTTCGCAAACGTGCTGCAATACACTCCAGAAGGCGCCTATA
GCGGATTCGATGCATCACAGCCCACTGCAGCCTCAGGAGGCAAGGCCAAG
GCCATCGAGCGCATCCTCGCCAGCGAGCCACCCGGCACAGAGGCCGTCAT
GATCGGAGATGGGGTCACAGACGCAGAAGCACGACCCCCAGCAAAGGCCT
TCATCGGGTTTGGAGGGGTTGTGCACAGGAAAGCCGTTGAGGAGAAGGCA
GACCTCTTCCTCCACTCCTTCAAAGACGCAATCGAAATGGTCCGCGCTGA
ATAA
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