mRNA_M-pyrifera_M_contig100621.139.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100621.139.1
Unique NamemRNA_M-pyrifera_M_contig100621.139.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A1S3IXN6_LINUN (programmed cell death protein 6 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IXN6_LINUN)

HSP 1 Score: 125 bits (314), Expect = 9.590e-33
Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 1
Query:    1 PPPAM--DL---FRRVDRDGSGQISPQELQGALKDG-MSEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQITSVXXXXXXXXXXXXEFIRVNIELQML 408
            PPP +  DL   F+ VD+D SGQI+  ELQ AL +G  + F+  TCRLM+ MFD DRSG IG+ EF ALWK++ DW+ CFD +D DRSG I  +EL  A  +FGY  SP F   +T V            +FI+  + L+ L
Sbjct:  104 PPPGISPDLWQWFQAVDQDRSGQITASELQSALVNGNWTPFNKETCRLMIGMFDKDRSGTIGVQEFAALWKYIQDWKSCFDGFDADRSGNIDANELNNAFRTFGYNLSPQFCQLVTRVFDRSGRGVMKFDDFIQACVMLKSL 245          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A7R9BEQ3_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BEQ3_9CRUS)

HSP 1 Score: 124 bits (310), Expect = 2.500e-32
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   16 DLFRRVDRDGSGQISPQELQGALKDGM-SEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQITSVXXXXXXXXXXXXEFIRVNIELQML 408
            D+FRRVDRD SG IS +EL+ AL +G  + F   T RLM+ MFD DRSG +  +EF+ALWK++ DW+ CF S+DRD SG I  +EL  AL +FGYRF  SF+  + S             +FI+  + L +L
Sbjct:   16 DVFRRVDRDNSGAISAEELRSALSNGTWTPFSAETVRLMINMFDHDRSGTVNFNEFSALWKYVVDWQACFRSFDRDNSGNIDGAELRHALTTFGYRFQDSFVDVLVSKFDRQGRRVIFFDDFIQCCVMLHIL 147          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A443R3J3_9ACAR (Programmed cell death protein 6-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443R3J3_9ACAR)

HSP 1 Score: 120 bits (301), Expect = 5.520e-32
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   16 DLFRRVDRDGSGQISPQELQGALKDGM-SEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQITSVXXXXXXXXXXXXEFIRVNIELQML 408
            D+FRRVDRDGSG I+  ELQ AL +G    F+  T RLM+ MFD D +G I   EF  LWK++ DW  CF S+DRD SG I  SEL +AL +FGYR S +F + +               +FI++ + LQ L
Sbjct:    9 DIFRRVDRDGSGAINTNELQSALSNGTWKPFNPETVRLMIGMFDRDHTGTINFQEFQQLWKYVTDWLNCFRSFDRDNSGNIDKSELQSALTTFGYRLSENFYNIVMRKFDRNNQNSINFDDFIQLCVTLQQL 140          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A132AKN7_SARSC (40S ribosomal protein S12 n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A132AKN7_SARSC)

HSP 1 Score: 120 bits (300), Expect = 1.000e-31
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   19 LFRRVDRDGSGQISPQELQGALKDGM-SEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQITSVXXXXXXXXXXXXEFIRVNIELQML 408
            +F +VDRD SG I+  ELQGAL +G    F+  T RLM+AMFD DR+G I  DEF  LW+++ DW  CF S+DRD SG I   EL  AL +FGYRFS +FL  +               +FI++ ++LQ L
Sbjct:   19 VFDKVDRDKSGHITSTELQGALSNGTWKPFNPETVRLMIAMFDKDRTGSINFDEFANLWRYVTDWLNCFRSFDRDNSGNIDPKELRQALTTFGYRFSDNFLDILMKRYDREGKGHVTFDDFIQLCVQLQTL 149          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: T1KZG4_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KZG4_TETUR)

HSP 1 Score: 119 bits (298), Expect = 1.750e-31
Identity = 64/132 (48.48%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   16 DLFRRVDRDGSGQISPQELQGALKDGM-SEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQITSVXXXXXXXXXXXXEFIRVNIELQML 408
            DLFRRVDRDGSG I+  ELQ AL +G  S F+  T RLM+ MFD DR+G I   EF  LW ++  W  CF S+DRD SG I   EL  AL +FGYR S SF S I               +FI++ + LQ L
Sbjct:   13 DLFRRVDRDGSGAINANELQSALSNGTWSAFNGETVRLMIGMFDKDRNGSINYQEFVHLWDYVTRWLNCFKSFDRDNSGNIDREELKQALTTFGYRLSDSFYSIIIRKFDRKGAGSIYFDDFIQLCVLLQSL 144          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A1C7NCR6_9FUNG (Programmed cell death protein 6 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NCR6_9FUNG)

HSP 1 Score: 120 bits (300), Expect = 1.860e-31
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   22 FRRVDRDGSGQISPQELQGALKDG-MSEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFL 318
            F+ VD DGSGQ+S  ELQ AL +G  S F++ T RLMV MFDSD SG IG +EF+ LWK++ DW+RCF ++D DRSG+I+ SE+  AL SFG+  SP F+
Sbjct:   44 FKAVDTDGSGQLSADELQRALINGDWSPFNIETVRLMVNMFDSDNSGTIGFNEFSGLWKYIEDWKRCFQAFDVDRSGSINESEMGNALRSFGFNVSPKFI 143          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A1I7Y740_9BILA (Uncharacterized protein n=2 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7Y740_9BILA)

HSP 1 Score: 119 bits (298), Expect = 2.180e-31
Identity = 63/136 (46.32%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    4 PPAMDLFRRVDRDGSGQISPQELQGALKDGM-SEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQITSVXXXXXXXXXXXXEFIRVNIELQML 408
            P  + +F+RVDRD SGQIS  ELQ AL +G  S F+  TCRLM+ MFDS+  G I   EF ALW ++  W  CF S+DRD SG I   EL  AL  FGYR SP F+S +               +FI++ + LQ L
Sbjct:    4 PNLLQIFQRVDRDRSGQISVDELQSALSNGTWSPFNPETCRLMIGMFDSNGDGAINFAEFQALWNYVNQWTECFRSFDRDNSGNIDLGELNQALTQFGYRLSPQFVSLLIRKFDRTHTNSVNFDDFIQLMVVLQTL 139          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A8J4SH46_9TREM (Programmed cell death protein 6 n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4SH46_9TREM)

HSP 1 Score: 117 bits (294), Expect = 6.840e-31
Identity = 58/133 (43.61%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   13 MDLFRRVDRDGSGQISPQELQGALKDGMS-EFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQITSVXXXXXXXXXXXXEFIRVNIELQML 408
            + LFR+ D+DG+GQI   ELQ AL +G++  F++ T  +++AMFD D SG+I   EF+ L+ ++  W++CF+ +D DRSGTI   EL TALA+FGYR SPSF++++ S             +FI+  + LQ L
Sbjct:   13 LTLFRKADKDGNGQIDAYELQDALSNGINIPFNIKTVHMLLAMFDRDFSGRIEFHEFSDLYNYITQWKQCFERFDTDRSGTIDSRELHTALATFGYRLSPSFVNRMISRFDRTHRGVVAFDDFIQALVCLQQL 145          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: A0A165IFB5_EXIGL (EF-hand (Fragment) n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165IFB5_EXIGL)

HSP 1 Score: 118 bits (295), Expect = 6.890e-31
Identity = 60/115 (52.17%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 PPPAMD-----LFRRVDRDGSGQISPQELQGALKDG-MSEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFLSQI 327
            PPP  D      F  VD DGSG IS  ELQ AL +G  + FDL T ++++ +FD+DRSG IG +EF  LWK++ DW+  F  +DRDRSG I HSEL+ ALASFGY  SP  +  I
Sbjct:   10 PPPGADPTLWAWFSAVDADGSGSISATELQQALVNGNWTAFDLDTVKMLMTIFDTDRSGTIGFNEFAGLWKYIADWQNVFRHFDRDRSGNIDHSELSAALASFGYHLSPRTIQGI 124          
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Match: UPI001F0F5087 (programmed cell death protein 6-like isoform X3 n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F0F5087)

HSP 1 Score: 117 bits (293), Expect = 9.680e-31
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   19 LFRRVDRDGSGQISPQELQGALKDGM-SEFDLATCRLMVAMFDSDRSGQIGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPSFL 318
            +F +VD+D SGQIS  ELQGAL +G    F+  T RLM+AMFD D++G I  +EF+ LW+++ DW  CF S+DRD SG I  SEL  AL +FGYRF+ SFL
Sbjct:   59 VFDKVDKDRSGQISANELQGALSNGTWKPFNPETVRLMIAMFDKDKTGSINFEEFSHLWRYVTDWLNCFRSFDRDNSGNIDPSELRQALTTFGYRFTDSFL 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100621.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3IXN6_LINUN9.590e-3346.48programmed cell death protein 6 n=1 Tax=Lingula un... [more]
A0A7R9BEQ3_9CRUS2.500e-3246.97Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A443R3J3_9ACAR5.520e-3246.21Programmed cell death protein 6-like protein n=1 T... [more]
A0A132AKN7_SARSC1.000e-3146.5640S ribosomal protein S12 n=1 Tax=Sarcoptes scabie... [more]
T1KZG4_TETUR1.750e-3148.48Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A1C7NCR6_9FUNG1.860e-3157.00Programmed cell death protein 6 n=1 Tax=Choanephor... [more]
A0A1I7Y740_9BILA2.180e-3146.32Uncharacterized protein n=2 Tax=Steinernema glaser... [more]
A0A8J4SH46_9TREM6.840e-3143.61Programmed cell death protein 6 n=1 Tax=Paragonimu... [more]
A0A165IFB5_EXIGL6.890e-3152.17EF-hand (Fragment) n=1 Tax=Exidia glandulosa HHB12... [more]
UPI001F0F50879.680e-3155.45programmed cell death protein 6-like isoform X3 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100621contigM-pyrifera_M_contig100621:271..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score120.2
Seed ortholog evalue7.4e-25
Seed eggNOG ortholog32264.tetur28g01520.1
Preferred nameAlg-2
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009893,GO:0009966,GO:0009967,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016787,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023056,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032872,GO:0032874,GO:0042325,GO:0042327,GO:0043170,GO:0043408,GO:0043410,GO:0044238,GO:0044424,GO:0044464,GO:0045937,GO:0046328,GO:0046330,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070011,GO:0070302,GO:0070304,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0140096,GO:1901564,GO:1902531,GO:1902533
EggNOG free text desc.Calcium ion binding
EggNOG OGs38DBU@33154,3BFNP@33208,3CS7A@33213,41YGX@6656,KOG0037@1,KOG0037@2759
COG Functional cat.T
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.1977303-UTR-M-pyrifera_M_contig100621:270..2821622815503.1977303-UTR-M-pyrifera_M_contig100621:270..282Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100621 271..282 +
1692277440.7689714-UTR-M-pyrifera_M_contig100621:270..2821692277440.7689714-UTR-M-pyrifera_M_contig100621:270..282Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100621 271..282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.2148383-CDS-M-pyrifera_M_contig100621:282..6781622815503.2148383-CDS-M-pyrifera_M_contig100621:282..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100621 283..678 +
1692277440.7778788-CDS-M-pyrifera_M_contig100621:282..6781692277440.7778788-CDS-M-pyrifera_M_contig100621:282..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100621 283..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100621.139.1prot_M-pyrifera_M_contig100621.139.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100621 283..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100621.139.1

>prot_M-pyrifera_M_contig100621.139.1 ID=prot_M-pyrifera_M_contig100621.139.1|Name=mRNA_M-pyrifera_M_contig100621.139.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MDLFRRVDRDGSGQISPQELQGALKDGMSEFDLATCRLMVAMFDSDRSGQ
IGIDEFTALWKFLCDWRRCFDSYDRDRSGTISHSELATALASFGYRFSPS
FLSQITSVYDADKSGTLSYAEFIRVNIELQML
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mRNA from alignment at M-pyrifera_M_contig100621:271..678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100621.139.1 ID=mRNA_M-pyrifera_M_contig100621.139.1|Name=mRNA_M-pyrifera_M_contig100621.139.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig100621:271..678+ (Macrocystis pyrifera P11B4 male)
CCCCCACCTGCCATGGACCTGTTCCGGCGCGTTGACCGCGACGGATCGGG ACAGATCTCGCCGCAGGAGCTGCAAGGCGCGCTGAAGGACGGCATGTCCG AGTTTGACCTCGCCACCTGCCGCCTCATGGTCGCCATGTTCGACAGCGAC CGCAGCGGACAGATTGGAATCGATGAGTTCACCGCGTTGTGGAAGTTCCT GTGCGACTGGCGCCGCTGCTTCGACTCGTACGACCGCGATCGCAGCGGCA CGATCTCGCACTCCGAGCTGGCCACCGCCCTGGCCTCCTTCGGCTACCGC TTCTCTCCCTCTTTCCTCTCCCAGATCACTTCCGTGTATGACGCCGACAA GAGCGGCACTCTGTCCTACGCGGAGTTCATCCGCGTGAACATTGAGCTGC AGATGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100621:271..678+

>mRNA_M-pyrifera_M_contig100621.139.1 ID=mRNA_M-pyrifera_M_contig100621.139.1|Name=mRNA_M-pyrifera_M_contig100621.139.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig100621:271..678+ (Macrocystis pyrifera P11B4 male)
ATGGACCTGTTCCGGCGCGTTGACCGCGACGGATCGGGACAGATCTCGCC
GCAGGAGCTGCAAGGCGCGCTGAAGGACGGCATGTCCGAGTTTGACCTCG
CCACCTGCCGCCTCATGGTCGCCATGTTCGACAGCGACCGCAGCGGACAG
ATTGGAATCGATGAGTTCACCGCGTTGTGGAAGTTCCTGTGCGACTGGCG
CCGCTGCTTCGACTCGTACGACCGCGATCGCAGCGGCACGATCTCGCACT
CCGAGCTGGCCACCGCCCTGGCCTCCTTCGGCTACCGCTTCTCTCCCTCT
TTCCTCTCCCAGATCACTTCCGTGTATGACGCCGACAAGAGCGGCACTCT
GTCCTACGCGGAGTTCATCCGCGTGAACATTGAGCTGCAGATGCTGATGG
ACCTGTTCCGGCGCGTTGACCGCGACGGATCGGGACAGATCTCGCCGCAG
GAGCTGCAAGGCGCGCTGAAGGACGGCATGTCCGAGTTTGACCTCGCCAC
CTGCCGCCTCATGGTCGCCATGTTCGACAGCGACCGCAGCGGACAGATTG
GAATCGATGAGTTCACCGCGTTGTGGAAGTTCCTGTGCGACTGGCGCCGC
TGCTTCGACTCGTACGACCGCGATCGCAGCGGCACGATCTCGCACTCCGA
GCTGGCCACCGCCCTGGCCTCCTTCGGCTACCGCTTCTCTCCCTCTTTCC
TCTCCCAGATCACTTCCGTGTATGACGCCGACAAGAGCGGCACTCTGTCC
TACGCGGAGTTCATCCGCGTGAACATTGAGCTGCAGATGCTG
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