mRNA_M-pyrifera_M_contig100619.138.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100619.138.1
Unique NamemRNA_M-pyrifera_M_contig100619.138.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A7C3E8Q0_9DELT (PaaI family thioesterase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3E8Q0_9DELT)

HSP 1 Score: 77.8 bits (190), Expect = 1.830e-16
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    4 WLATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQ-DGELAVHALTTMREIQAPKTLGD 198
            WLATT+MR+DYFEPI+GP F+IESK+ K RGRT  V T+F+  +  LAV A T +RE+   + LGD
Sbjct:   95 WLATTSMRLDYFEPIVGPEFVIESKLVKARGRTRAVETRFYDPEDTLAVFAFTLIREMPLDRVLGD 160          
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A523II92_9DELT (PaaI family thioesterase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523II92_9DELT)

HSP 1 Score: 77.4 bits (189), Expect = 2.260e-16
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 WLATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQ-DGELAVHALTTMREIQAPKTLGDA 201
            WLATTNMR+DYFEP+ GP F I+S +   RGR  FV T+F   D +L V ALTT+R I     LGDA
Sbjct:   89 WLATTNMRVDYFEPVTGPRFFIQSTLVNQRGRMYFVETRFLNVDDKLLVFALTTLRRIPMTGALGDA 155          
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A2H5ZIH1_9BACT (4HBT domain-containing protein n=1 Tax=bacterium HR30 TaxID=2035425 RepID=A0A2H5ZIH1_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 2.590e-16
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    4 WLATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQ-DGELAVHALTTMREIQAPKTLGD 198
            WLATT+MRIDYFEPI+GP F+IESK+ K RGRT  V T+F+  +  LAV A T +RE+   + LGD
Sbjct:   95 WLATTSMRIDYFEPIVGPHFLIESKLAKARGRTRAVETRFYDPEDTLAVFAFTLIREMPLGRPLGD 160          
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A7C7YLH8_9DELT (PaaI family thioesterase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YLH8_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 7.610e-11
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    4 WLATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQ-DGELAVHALTTMREI 174
            WLAT NMR+DY+ P+ GP F IE +V   RG   F+ T FF  +GE   +  TT+RE+
Sbjct:   96 WLATLNMRVDYYAPVRGPRFEIEGRVVNRRGAMTFIETLFFHPEGEALAYGYTTLREV 153          
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A7C7Y2W0_9DELT (PaaI family thioesterase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7Y2W0_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-8
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    4 WLATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQD-GELAVHALTTMREI 174
            WLAT NMR+DY+ P+ GP F +E +V    G+  FV  +F+   GE  V+A TT++ +
Sbjct:   96 WLATVNMRVDYYAPVRGPRFELEGRVVVRSGKMTFVEVRFYNPHGESLVYAYTTLKAV 153          
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A2E4YC66_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4YC66_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 5.710e-8
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    4 WLATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQ-DGELAVHALTTMRE 171
            W AT NMRIDYF P+LGPTF +  ++      T  VAT F    G   V+A+TT+R+
Sbjct:   82 WSATVNMRIDYFAPVLGPTFKLRGELINDGRTTCLVATHFLDLSGNKLVYAITTLRK 138          
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A2D7I4L5_9DELT (4HBT domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7I4L5_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 6.280e-7
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    4 WLATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQ-DGELAVHALTTMREI 174
            WLAT N+R+DYFEPI+   F +  +V + RG+  ++  QF   +GE+ VHA  +++ I
Sbjct:   96 WLATLNLRVDYFEPIVESHFEMVGRVIRRRGQLSWIECQFLSPEGEVCVHAYVSLKAI 153          
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Match: A0A3B8YZM8_9DELT (4HBT domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3B8YZM8_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 2.930e-6
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    7 LATTNMRIDYFEPILGPTFIIESKVEKHRGRTVFVATQF-FQDGELAVHALTTMREI 174
            L T NMRIDYFEP+  P F++E+++ K RG   FV  +F   DG L V A   +R +
Sbjct:  106 LTTLNMRIDYFEPVRAPRFLLEAELLKSRGANCFVEVRFRAPDGLLLVAASVALRRL 162          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100619.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7C3E8Q0_9DELT1.830e-1657.58PaaI family thioesterase n=1 Tax=Deltaproteobacter... [more]
A0A523II92_9DELT2.260e-1656.72PaaI family thioesterase n=1 Tax=Deltaproteobacter... [more]
A0A2H5ZIH1_9BACT2.590e-1659.094HBT domain-containing protein n=1 Tax=bacterium H... [more]
A0A7C7YLH8_9DELT7.610e-1148.28PaaI family thioesterase n=1 Tax=Myxococcales bact... [more]
A0A7C7Y2W0_9DELT1.300e-843.10PaaI family thioesterase n=1 Tax=Myxococcales bact... [more]
A0A2E4YC66_9GAMM5.710e-847.37Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2D7I4L5_9DELT6.280e-741.384HBT domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A3B8YZM8_9DELT2.930e-645.614HBT domain-containing protein n=1 Tax=Deltaproteo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100619contigM-pyrifera_M_contig100619:468..677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.1432016-CDS-M-pyrifera_M_contig100619:467..6561622815503.1432016-CDS-M-pyrifera_M_contig100619:467..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100619 468..656 -
1692277440.7518456-CDS-M-pyrifera_M_contig100619:467..6561692277440.7518456-CDS-M-pyrifera_M_contig100619:467..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100619 468..656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.1558745-UTR-M-pyrifera_M_contig100619:656..6771622815503.1558745-UTR-M-pyrifera_M_contig100619:656..677Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100619 657..677 -
1692277440.7612474-UTR-M-pyrifera_M_contig100619:656..6771692277440.7612474-UTR-M-pyrifera_M_contig100619:656..677Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100619 657..677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100619.138.1prot_M-pyrifera_M_contig100619.138.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100619 468..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100619.138.1

>prot_M-pyrifera_M_contig100619.138.1 ID=prot_M-pyrifera_M_contig100619.138.1|Name=mRNA_M-pyrifera_M_contig100619.138.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
MRIDYFEPILGPTFIIESKVEKHRGRTVFVATQFFQDGELAVHALTTMRE
IQAPKTLGDALA*
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mRNA from alignment at M-pyrifera_M_contig100619:468..677-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100619.138.1 ID=mRNA_M-pyrifera_M_contig100619.138.1|Name=mRNA_M-pyrifera_M_contig100619.138.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig100619:468..677- (Macrocystis pyrifera P11B4 male)
GGGTGGTTGGCGACCACCAACATGCGCATCGACTATTTCGAGCCGATCCT GGGCCCGACGTTCATCATCGAGAGCAAGGTCGAAAAGCACCGTGGCCGAA CGGTCTTCGTCGCCACCCAGTTCTTCCAAGACGGTGAGTTGGCAGTCCAC GCGCTCACGACGATGCGTGAGATCCAGGCTCCGAAGACGCTCGGTGACGC CCTGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100619:468..677-

>mRNA_M-pyrifera_M_contig100619.138.1 ID=mRNA_M-pyrifera_M_contig100619.138.1|Name=mRNA_M-pyrifera_M_contig100619.138.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig100619:468..677- (Macrocystis pyrifera P11B4 male)
ATGCGCATCGACTATTTCGAGCCGATCCTGGGCCCGACGTTCATCATCGA
GAGCAAGGTCGAAAAGCACCGTGGCCGAACGGTCTTCGTCGCCACCCAGT
TCTTCCAAGACGGTGAGTTGGCAGTCCACGCGCTCACGACGATGCGTGAG
ATCCAGGCTCCGAAGACGCTCGGTGACGCCCTGGCCTGAATGCGCATCGA
CTATTTCGAGCCGATCCTGGGCCCGACGTTCATCATCGAGAGCAAGGTCG
AAAAGCACCGTGGCCGAACGGTCTTCGTCGCCACCCAGTTCTTCCAAGAC
GGTGAGTTGGCAGTCCACGCGCTCACGACGATGCGTGAGATCCAGGCTCC
GAAGACGCTCGGTGACGCCCTGGCCTGA
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