mRNA_M-pyrifera_M_contig100618.137.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100618.137.1
Unique NamemRNA_M-pyrifera_M_contig100618.137.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100618.137.1 vs. uniprot
Match: A0A3D1G9Z5_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G9Z5_9BACT)

HSP 1 Score: 186 bits (472), Expect = 2.400e-51
Identity = 99/218 (45.41%), Postives = 145/218 (66.51%), Query Frame = 1 
Query:    1 NDDFVVDSVLIYEVEENEETMLPEIGRVELKTEMDYDSFGNQVEVRNYTIHNDTLKINSKTVRHFKVFKNYNGEDYYTLVKQESYGRDFFTGEFYRSNVSETNYDSEGVYQGNRYFNFSAVGDTTFGYITQRDTLLGGETVEVRFEWSATHQKLLLKSYRIYNRRTNGDMGQGFNQTVYATI-INGEE-AINRSMNVYYNYPGIFNDGPIYTELGDTL 648
            ND ++VDS++IY+++ + E+M   +G V  +TEMDYD  GNQ+EVRN+  ++D+L++ SKT+R +K    Y+     T+V  ++Y RD+ TG+ Y  N   TNY  EG + G +   F+  GDTT  YI +R TLL G T E+R EW   ++ L L+S RIY R+T GD G  FNQ++  +  I+G++  +NRSMN Y +YPGIFNDGP++  LGDT+
Sbjct:  351 NDSYLVDSIMIYDIDTDPESMERTLGNVYQRTEMDYDEDGNQIEVRNFVNYDDSLELASKTIREYKKINGYS-----TIVATKTYTRDYLTGDLYFYNDYVTNYGPEGEFLGYKQVWFNPSGDTTNAYIIERRTLLDGSTGELRMEWDYNNKNLYLRSVRIYGRQTTGDNGNRFNQSMTLSYNIDGDQIGVNRSMNSYSSYPGIFNDGPVFAALGDTV 563
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BLAST of mRNA_M-pyrifera_M_contig100618.137.1 vs. uniprot
Match: A0A1B6Y7X9_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6Y7X9_9BACT)

HSP 1 Score: 139 bits (351), Expect = 1.500e-34
Identity = 92/222 (41.44%), Postives = 125/222 (56.31%), Query Frame = 1 
Query:    1 NDDFVVDSVLIYEV--EENEETMLPEIGRVELKTEMDYDSFGNQVEVRNYTIHNDTLKINSKTVRHFKVFKNYNGEDYYTLVKQESYGRDFFTGEFYRSNVSETNYDSEGVYQGNRYFNFSAVGDTTFGYITQRDTLLGGETVEVRFEWSATHQKLLLKSYRIYNRRTNGDMGQGFNQTVYATIINGEEAINRSMNVYYNYPGIFNDGPIYTELGDTLIYYV 660
            ND+ VVDS++ Y V  +  +E   P I    ++TE  YD  GNQ EVR Y++    L + S+TVR +++     GE YY +V+Q++Y RDF TGE Y+S   E  YD  G   G+R FN +A GDTT+G   Q  TL  G  V +  +W     +L+   YR Y R   G+ G   NQ+ Y  +I       RS+NV  NYPG+FNDGPI    GDTL ++V
Sbjct:  327 NDETVVDSIINYSVYPDSLDENNGPVIDEAIIRTEFVYDINGNQTEVRTYSLIEGVLTLTSRTVRTWELI----GE-YYVVVRQDTYSRDFTTGELYKSGFFERFYDEGGSNTGDRTFNLNAAGDTTYGRGNQSLTLEDGTRVYLTLQWDFNLNELVPLYYRAYPRSVFGEGGY-LNQSTYFDLITNSGT--RSINVGGNYPGVFNDGPIPIMAGDTLSFFV 540
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100618.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D1G9Z5_9BACT2.400e-5145.41Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
A0A1B6Y7X9_9BACT1.500e-3441.44Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100618contigM-pyrifera_M_contig100618:2..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score106.3
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog1121930.AQXG01000005_gene601
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase S8 family
EggNOG OGs1IURU@117747,4NVH2@976,COG1404@1,COG1404@2
COG Functional cat.O
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size660
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815503.0937328-CDS-M-pyrifera_M_contig100618:1..6611622815503.0937328-CDS-M-pyrifera_M_contig100618:1..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100618 2..661 -
1692277440.7364714-CDS-M-pyrifera_M_contig100618:1..6611692277440.7364714-CDS-M-pyrifera_M_contig100618:1..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100618 2..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100618.137.1prot_M-pyrifera_M_contig100618.137.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100618 2..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100618.137.1

>prot_M-pyrifera_M_contig100618.137.1 ID=prot_M-pyrifera_M_contig100618.137.1|Name=mRNA_M-pyrifera_M_contig100618.137.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
NDDFVVDSVLIYEVEENEETMLPEIGRVELKTEMDYDSFGNQVEVRNYTI
HNDTLKINSKTVRHFKVFKNYNGEDYYTLVKQESYGRDFFTGEFYRSNVS
ETNYDSEGVYQGNRYFNFSAVGDTTFGYITQRDTLLGGETVEVRFEWSAT
HQKLLLKSYRIYNRRTNGDMGQGFNQTVYATIINGEEAINRSMNVYYNYP
GIFNDGPIYTELGDTLIYYV
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mRNA from alignment at M-pyrifera_M_contig100618:2..661-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100618.137.1 ID=mRNA_M-pyrifera_M_contig100618.137.1|Name=mRNA_M-pyrifera_M_contig100618.137.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig100618:2..661- (Macrocystis pyrifera P11B4 male)
AATGATGATTTCGTAGTAGATTCAGTGCTAATTTATGAAGTAGAAGAAAA
TGAGGAAACAATGCTTCCTGAAATTGGGAGAGTAGAACTGAAAACCGAAA
TGGATTACGATAGCTTTGGAAATCAGGTTGAGGTGCGTAATTATACAATA
CACAATGATACACTTAAAATTAATAGTAAAACGGTTCGGCATTTCAAGGT
GTTTAAGAATTATAACGGCGAAGATTATTATACCTTAGTAAAACAAGAAT
CTTATGGAAGGGACTTTTTTACTGGAGAGTTTTATCGTTCAAATGTTTCG
GAAACAAATTACGATAGCGAAGGAGTGTATCAGGGGAATAGGTATTTTAA
CTTTAGTGCGGTAGGCGATACAACTTTTGGATATATAACTCAAAGAGACA
CTCTTCTTGGTGGAGAAACAGTTGAAGTTAGATTCGAATGGTCTGCTACA
CATCAAAAATTACTTCTTAAAAGTTATAGAATCTATAACAGAAGAACCAA
TGGAGACATGGGGCAAGGATTCAATCAAACTGTTTATGCAACTATTATAA
ATGGTGAAGAGGCAATAAATCGTAGCATGAATGTATATTATAACTATCCA
GGAATTTTTAACGATGGTCCCATTTACACAGAATTGGGAGACACCTTAAT
CTATTACGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100618:2..661-

>mRNA_M-pyrifera_M_contig100618.137.1 ID=mRNA_M-pyrifera_M_contig100618.137.1|Name=mRNA_M-pyrifera_M_contig100618.137.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig100618:2..661- (Macrocystis pyrifera P11B4 male)
AATGATGATTTCGTAGTAGATTCAGTGCTAATTTATGAAGTAGAAGAAAA
TGAGGAAACAATGCTTCCTGAAATTGGGAGAGTAGAACTGAAAACCGAAA
TGGATTACGATAGCTTTGGAAATCAGGTTGAGGTGCGTAATTATACAATA
CACAATGATACACTTAAAATTAATAGTAAAACGGTTCGGCATTTCAAGGT
GTTTAAGAATTATAACGGCGAAGATTATTATACCTTAGTAAAACAAGAAT
CTTATGGAAGGGACTTTTTTACTGGAGAGTTTTATCGTTCAAATGTTTCG
GAAACAAATTACGATAGCGAAGGAGTGTATCAGGGGAATAGGTATTTTAA
CTTTAGTGCGGTAGGCGATACAACTTTTGGATATATAACTCAAAGAGACA
CTCTTCTTGGTGGAGAAACAGTTGAAGTTAGATTCGAATGGTCTGCTACA
CATCAAAAATTACTTCTTAAAAGTTATAGAATCTATAACAGAAGAACCAA
TGGAGACATGGGGCAAGGATTCAATCAAACTGTTTATGCAACTATTATAA
ATGGTGAAGAGGCAATAAATCGTAGCATGAATGTATATTATAACTATCCA
GGAATTTTTAACGATGGTCCCATTTACACAGAATTGGGAGACACCTTAAT
CTATTACGTTAATGATGATTTCGTAGTAGATTCAGTGCTAATTTATGAAG
TAGAAGAAAATGAGGAAACAATGCTTCCTGAAATTGGGAGAGTAGAACTG
AAAACCGAAATGGATTACGATAGCTTTGGAAATCAGGTTGAGGTGCGTAA
TTATACAATACACAATGATACACTTAAAATTAATAGTAAAACGGTTCGGC
ATTTCAAGGTGTTTAAGAATTATAACGGCGAAGATTATTATACCTTAGTA
AAACAAGAATCTTATGGAAGGGACTTTTTTACTGGAGAGTTTTATCGTTC
AAATGTTTCGGAAACAAATTACGATAGCGAAGGAGTGTATCAGGGGAATA
GGTATTTTAACTTTAGTGCGGTAGGCGATACAACTTTTGGATATATAACT
CAAAGAGACACTCTTCTTGGTGGAGAAACAGTTGAAGTTAGATTCGAATG
GTCTGCTACACATCAAAAATTACTTCTTAAAAGTTATAGAATCTATAACA
GAAGAACCAATGGAGACATGGGGCAAGGATTCAATCAAACTGTTTATGCA
ACTATTATAAATGGTGAAGAGGCAATAAATCGTAGCATGAATGTATATTA
TAACTATCCAGGAATTTTTAACGATGGTCCCATTTACACAGAATTGGGAG
ACACCTTAATCTATTACGTT
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