mRNA_M-pyrifera_M_contig100546.123.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100546.123.1
Unique NamemRNA_M-pyrifera_M_contig100546.123.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A6I6AEL8_9PLAN (DUF3857 domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AEL8_9PLAN)

HSP 1 Score: 445 bits (1145), Expect = 4.380e-152
Identity = 218/225 (96.89%), Postives = 223/225 (99.11%), Query Frame = 1
Query:    1 KIPVQIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP 675
            KIPVQIQKLSEDLTRES++TEDKIY+LY+YASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGEL TI CGGPE+HQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP
Sbjct:  261 KIPVQIQKLSEDLTRESDSTEDKIYSLYKYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELATIPCGGPESHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP 485          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A518AE73_9PLAN (Transglutaminase-like superfamily protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AE73_9PLAN)

HSP 1 Score: 377 bits (968), Expect = 2.280e-125
Identity = 184/224 (82.14%), Postives = 202/224 (90.18%), Query Frame = 1
Query:    4 IPVQIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP 675
            IP QIQKLSEDLTRESE+TE+KIY LY+YAS+DVRYGRHP+EL LEKTREVGSMLEDMRGDCKDKS+LLVSLLRHQGIEAE+AVLLTR NGT+ FLPGARFDHAIVCVT E G RLWLDPA GPMTFKD+PYNDQGMQALLL   AGELT I  GG E++ ++R+C+G LS DCSY F TNVSTTGDTAMEFRLRYINRNE YQSLTLE+ELASSLTGA+I+AP
Sbjct:  262 IPTQIQKLSEDLTRESESTEEKIYTLYKYASEDVRYGRHPSELNLEKTREVGSMLEDMRGDCKDKSALLVSLLRHQGIEAEIAVLLTRINGTVSFLPGARFDHAIVCVTFENGERLWLDPAAGPMTFKDIPYNDQGMQALLLKSAAGELTRIPSGGAESNHINRKCQGTLSADCSYRFATNVSTTGDTAMEFRLRYINRNEAYQSLTLEKELASSLTGAQIEAP 485          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A6CEA7_9PLAN (Uncharacterized protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6CEA7_9PLAN)

HSP 1 Score: 339 bits (869), Expect = 1.660e-110
Identity = 162/225 (72.00%), Postives = 191/225 (84.89%), Query Frame = 1
Query:    1 KIPVQIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP 675
            K P QIQKLS +L +E +T E+KI+  Y+YAS+DVRYGRHPNEL LEKTREVGSMLEDMRGDCKDKSSLLVSLLRH GI++ +A+LLTR NG+   LPGARFDHAIV VT   G RLWLDPAGGP+TFKD+P+NDQG QALLLN   GELTTI  GGPE HQ++R C G L++DCSY+F + V+T+GDTAMEFRL+Y+NRNE+Y +LTLE+ELASS TGARI+AP
Sbjct:  261 KTPSQIQKLSTELIQEEQTEEEKIFTAYKYASEDVRYGRHPNELTLEKTREVGSMLEDMRGDCKDKSSLLVSLLRHLGIKSSIAILLTRMNGSAALLPGARFDHAIVSVTTSSGERLWLDPAGGPVTFKDIPFNDQGTQALLLNREGGELTTIPEGGPEKHQINRVCNGILADDCSYQFTSEVTTSGDTAMEFRLKYVNRNEDYTTLTLEKELASSWTGARIEAP 485          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A518IJH7_9PLAN (Transglutaminase-like superfamily protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IJH7_9PLAN)

HSP 1 Score: 337 bits (863), Expect = 1.390e-109
Identity = 162/225 (72.00%), Postives = 191/225 (84.89%), Query Frame = 1
Query:    1 KIPVQIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP 675
            + P QIQKL+E+LT E +TTEDKIY++Y+Y+S+DVRYGRHPNEL LEKTRE+GSMLEDMRGDCKDKSSL+VS+LRH  IEA +A+LLTR NGT+ FLPGARFDHAIVCVT EQG RLWLDPAGGP+TFKDLPYNDQG QALLL+   GELTTI   GP+  Q+ R CEG LSEDCSY+F   V+T+GD AMEFRL+Y+ RN+E   + LE+ELAS LTGARI++P
Sbjct:  261 RTPPQIQKLAEELTSEDQTTEDKIYSIYKYSSEDVRYGRHPNELNLEKTREMGSMLEDMRGDCKDKSSLMVSMLRHLKIEAAIAILLTRMNGTVSFLPGARFDHAIVCVTLEQGERLWLDPAGGPVTFKDLPYNDQGTQALLLDSEGGELTTIPEEGPQGQQISRSCEGLLSEDCSYQFKAEVTTSGDAAMEFRLKYMYRNQESTVMMLEKELASHLTGARIESP 485          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A517RML4_9PLAN (Transglutaminase-like superfamily protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RML4_9PLAN)

HSP 1 Score: 336 bits (861), Expect = 2.770e-109
Identity = 161/225 (71.56%), Postives = 191/225 (84.89%), Query Frame = 1
Query:    1 KIPVQIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP 675
            + P QIQKL+E+L  + ++TEDKIY++Y+Y+S+DVRYGRHPNEL LEKTRE+G MLEDMRGDCKDKSSL+VS+LRH GIEA +A+LLTR NG++ FLPGARFDHAIVCVT E G RLWLDPAGGP+TFKD+PYNDQG QALLLN   GELTTI  GGP++ QV R CEG LSEDCSY+F   V T+GDTAME RL+Y+ RN+E   LTLE+ELAS LTGARI++P
Sbjct:  261 RTPPQIQKLAEELASDDQSTEDKIYSVYKYSSEDVRYGRHPNELNLEKTREMGLMLEDMRGDCKDKSSLMVSMLRHLGIEASIAILLTRMNGSVSFLPGARFDHAIVCVTLENGDRLWLDPAGGPVTFKDIPYNDQGTQALLLNSEGGELTTIPEGGPQSQQVSRTCEGFLSEDCSYQFTAEVRTSGDTAMELRLKYMYRNQESTVLTLEKELASHLTGARIESP 485          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A517VQQ3_9PLAN (Transglutaminase-like superfamily protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VQQ3_9PLAN)

HSP 1 Score: 336 bits (862), Expect = 4.000e-109
Identity = 160/225 (71.11%), Postives = 192/225 (85.33%), Query Frame = 1
Query:    1 KIPVQIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARIDAP 675
            K P QIQKLSE+LT+E ++ E+K+Y++Y+Y+S+DVRYGRHPNEL LEKTREVGSMLEDMRGDCKDKSSL+VS+LRH GI+  +A+LLTR NG++ FLPGARFDHAIVCV  E G RLWLDPAGGP+TFKDLP NDQG QALLLN   GELTTI   G ++HQ++R C G LSEDCSY+F   V+TTGDTAME RL+Y+NRNEE  +LTLE+ELA+ LTGARI++P
Sbjct:  288 KTPSQIQKLSEELTQEDQSEEEKLYSIYKYSSEDVRYGRHPNELNLEKTREVGSMLEDMRGDCKDKSSLMVSMLRHLGIKCNIAILLTRMNGSVSFLPGARFDHAIVCVDLENGKRLWLDPAGGPVTFKDLPTNDQGTQALLLNSNGGELTTIPDRGSQSHQINRVCHGVLSEDCSYQFTAEVTTTGDTAMELRLKYVNRNEESTALTLEKELAAHLTGARIESP 512          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A7C4QLP9_9PLAN (Transglutaminase domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QLP9_9PLAN)

HSP 1 Score: 149 bits (376), Expect = 4.210e-38
Identity = 76/217 (35.02%), Postives = 119/217 (54.84%), Query Frame = 1
Query:   16 IQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARI 666
            +  L  +LTR  +T  +K+ A+Y++ +  +RYGR P +    + R    +L ++RGDCKDKS+LLV LL   G+ A+VAV+ T   G  PFLP  RF+HA+V   +  G  LW+DPA GP +  DLP ND+G QALL++    +   +       H   R   G++  D ++     V  TG+ A   R   ++   E +   L ++LA+++ G  +
Sbjct:  265 VDDLVRELTRPEQTVREKVAAVYQHVARQIRYGRPPADAENRQVRAPQEVLAELRGDCKDKSALLVGLLNRLGVPAQVAVVTTSEGGRTPFLPSMRFNHALVRA-ELDGGELWIDPAAGPFSLGDLPSNDEGQQALLVDPGGPQFAQVPASRARNHSTKRIYRGRIQGDGAFVAEVTVRMTGEPAALLRAPLLDATAEERLKYLRQDLAATMPGCEV 480          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A2E0XAY1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0XAY1_9PLAN)

HSP 1 Score: 131 bits (329), Expect = 1.480e-31
Identity = 73/219 (33.33%), Postives = 117/219 (53.42%), Query Frame = 1
Query:   13 QIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARID 669
            +++KL+ +L+ ++++   K  + Y YA+  VRYGR P EL    TR   ++  D+RGDCKDKSSLL+ LL   GIEA++AV+LT   G   +LP  RF+HAIV  T + G  +WLD A G   F  +P ++  + AL+L+        +        +  R+ +G++    ++E        G+ A   R   ++RNEE+++  L     +   G   D
Sbjct:  290 EVRKLARELSADADSPLAKAQSAYAYAARQVRYGRPPAELEARNTRAASAVFADLRGDCKDKSSLLIELLEAMGIEAKLAVVLTADEGRTSYLPSTRFNHAIVRATID-GQHVWLDAASGLFGFGQMPDSNIDVAALMLDDAGFYFERVPLPDDNYFETRRRWQGEIDAAGNFEGRLQAEFNGEMAARLRHALLDRNEEHRTQVLRTWFGNDYPGFDAD 507          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A496TD39_9BACT (Uncharacterized protein n=5 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A496TD39_9BACT)

HSP 1 Score: 100 bits (248), Expect = 1.300e-20
Identity = 57/156 (36.54%), Postives = 88/156 (56.41%), Query Frame = 1
Query:   16 IQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIP--FLPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPE 477
            I+ + +DLT++ +T EDKI A+Y Y  +++RY      +   K +  G +L +  GDCKD S L++++L+  GI+A  A+L TR  GT    F+   +F+H IVCV  + G  LWLDP      + +LP+ DQG+ A ++      L T S    E
Sbjct:  469 IEDIVKDLTKDIQTREDKIKAIYHYVQENIRYVAKEIGIGSIKPQYAGEVLMNRYGDCKDCSVLMIAMLKETGIKAYPALLRTRNKGTFDKVFVSFEQFNHMIVCVPLD-GKYLWLDPTSDICPYGELPWQDQGVSAFVIKEEPEFLKTPSSSAAE 623          
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Match: A0A359LKW1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A359LKW1_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 2.590e-20
Identity = 67/213 (31.46%), Postives = 106/213 (49.77%), Query Frame = 1
Query:   34 DLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTREVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPF-LPGARFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGELTTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINRNEEYQSLTLERELASSLTGARID 669
            +L +   T E KI A+Y Y  +++RY      ++     E   + +   GDCKDK++LL+S+L+  GIE    +L TR +G I   LP  +FDHAI  V+   G  ++LD       F DLP  DQG+ A++L    GE   +     E +Q  R+ +  L ED S      V  +G  A  +R  + +  E  +   ++  L+SS  G+ ++
Sbjct:  878 ELIQNETTPEGKIRAIYHYVINEIRYLGLEFGISGHMPHEAAEVYKYKYGDCKDKATLLISMLKEAGIEVYYVLLRTRYSGEIDLDLPSFQFDHAIAAVS-LNGELMFLDGTAENYVFGDLPAMDQGVWAMVLINGEGEFVKVPIHPAEKNQRTRKIKLNLQEDGSVSGEATVLQSGIFAAYYRSLFKDLGEIKRKELIQNSLSSSCPGSVLE 1089          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100546.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6AEL8_9PLAN4.380e-15296.89DUF3857 domain-containing protein n=8 Tax=Gimesia ... [more]
A0A518AE73_9PLAN2.280e-12582.14Transglutaminase-like superfamily protein n=3 Tax=... [more]
A6CEA7_9PLAN1.660e-11072.00Uncharacterized protein n=8 Tax=Planctomycetaceae ... [more]
A0A518IJH7_9PLAN1.390e-10972.00Transglutaminase-like superfamily protein n=1 Tax=... [more]
A0A517RML4_9PLAN2.770e-10971.56Transglutaminase-like superfamily protein n=1 Tax=... [more]
A0A517VQQ3_9PLAN4.000e-10971.11Transglutaminase-like superfamily protein n=4 Tax=... [more]
A0A7C4QLP9_9PLAN4.210e-3835.02Transglutaminase domain-containing protein n=1 Tax... [more]
A0A2E0XAY1_9PLAN1.480e-3133.33Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A496TD39_9BACT1.300e-2036.54Uncharacterized protein n=5 Tax=candidate division... [more]
A0A359LKW1_9BACT2.590e-2031.46Uncharacterized protein n=1 Tax=Candidatus Atribac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100546contigM-pyrifera_M_contig100546:3..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score339.7
Seed ortholog evalue1e-90
Seed eggNOG ortholog344747.PM8797T_13575
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transglutaminase-like superfamily
EggNOG OGsCOG1305@1,COG1305@2
COG Functional cat.E
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size675
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815502.2329295-CDS-M-pyrifera_M_contig100546:2..6771622815502.2329295-CDS-M-pyrifera_M_contig100546:2..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100546 3..677 +
1692277440.4167776-CDS-M-pyrifera_M_contig100546:2..6771692277440.4167776-CDS-M-pyrifera_M_contig100546:2..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100546 3..677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100546.123.1prot_M-pyrifera_M_contig100546.123.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100546 3..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100546.123.1

>prot_M-pyrifera_M_contig100546.123.1 ID=prot_M-pyrifera_M_contig100546.123.1|Name=mRNA_M-pyrifera_M_contig100546.123.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=225bp
KIPVQIQKLSEDLTRESETTEDKIYALYEYASDDVRYGRHPNELALEKTR
EVGSMLEDMRGDCKDKSSLLVSLLRHQGIEAEVAVLLTRANGTIPFLPGA
RFDHAIVCVTDEQGVRLWLDPAGGPMTFKDLPYNDQGMQALLLNLPAGEL
TTISCGGPETHQVHRQCEGKLSEDCSYEFGTNVSTTGDTAMEFRLRYINR
NEEYQSLTLERELASSLTGARIDAP
back to top

mRNA from alignment at M-pyrifera_M_contig100546:3..677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100546.123.1 ID=mRNA_M-pyrifera_M_contig100546.123.1|Name=mRNA_M-pyrifera_M_contig100546.123.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=675bp|location=Sequence derived from alignment at M-pyrifera_M_contig100546:3..677+ (Macrocystis pyrifera P11B4 male)
AAAATCCCGGTACAGATTCAAAAACTGTCGGAGGATCTGACGCGCGAATC AGAAACGACTGAGGATAAAATTTACGCCCTTTATGAGTATGCCTCTGACG ATGTCCGCTATGGCAGACATCCCAACGAACTGGCTTTGGAAAAAACCAGG GAGGTCGGTTCGATGCTGGAGGATATGCGCGGAGACTGCAAAGACAAATC ATCGTTACTCGTCTCCCTGCTCAGGCACCAGGGAATTGAAGCCGAGGTCG CAGTTCTGCTGACACGCGCGAATGGAACAATCCCTTTTCTGCCTGGAGCT CGCTTCGATCATGCGATTGTCTGCGTTACCGATGAGCAGGGAGTCAGACT CTGGCTCGATCCGGCTGGCGGCCCGATGACTTTCAAAGATCTGCCTTATA ATGATCAGGGTATGCAGGCACTGTTGTTAAATCTTCCAGCGGGAGAACTG ACCACCATTTCCTGCGGCGGTCCGGAAACTCATCAGGTACATCGGCAATG CGAGGGGAAACTGTCCGAAGACTGCAGCTACGAGTTCGGCACCAATGTCT CAACGACAGGTGACACCGCCATGGAATTTCGTCTTCGCTACATCAACCGC AACGAAGAATACCAGAGCCTGACTCTGGAACGGGAACTCGCGTCTTCTCT GACGGGAGCCCGCATCGATGCTCCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100546:3..677+

>mRNA_M-pyrifera_M_contig100546.123.1 ID=mRNA_M-pyrifera_M_contig100546.123.1|Name=mRNA_M-pyrifera_M_contig100546.123.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1350bp|location=Sequence derived from alignment at M-pyrifera_M_contig100546:3..677+ (Macrocystis pyrifera P11B4 male)
AAAATCCCGGTACAGATTCAAAAACTGTCGGAGGATCTGACGCGCGAATC
AGAAACGACTGAGGATAAAATTTACGCCCTTTATGAGTATGCCTCTGACG
ATGTCCGCTATGGCAGACATCCCAACGAACTGGCTTTGGAAAAAACCAGG
GAGGTCGGTTCGATGCTGGAGGATATGCGCGGAGACTGCAAAGACAAATC
ATCGTTACTCGTCTCCCTGCTCAGGCACCAGGGAATTGAAGCCGAGGTCG
CAGTTCTGCTGACACGCGCGAATGGAACAATCCCTTTTCTGCCTGGAGCT
CGCTTCGATCATGCGATTGTCTGCGTTACCGATGAGCAGGGAGTCAGACT
CTGGCTCGATCCGGCTGGCGGCCCGATGACTTTCAAAGATCTGCCTTATA
ATGATCAGGGTATGCAGGCACTGTTGTTAAATCTTCCAGCGGGAGAACTG
ACCACCATTTCCTGCGGCGGTCCGGAAACTCATCAGGTACATCGGCAATG
CGAGGGGAAACTGTCCGAAGACTGCAGCTACGAGTTCGGCACCAATGTCT
CAACGACAGGTGACACCGCCATGGAATTTCGTCTTCGCTACATCAACCGC
AACGAAGAATACCAGAGCCTGACTCTGGAACGGGAACTCGCGTCTTCTCT
GACGGGAGCCCGCATCGATGCTCCTAAAATCCCGGTACAGATTCAAAAAC
TGTCGGAGGATCTGACGCGCGAATCAGAAACGACTGAGGATAAAATTTAC
GCCCTTTATGAGTATGCCTCTGACGATGTCCGCTATGGCAGACATCCCAA
CGAACTGGCTTTGGAAAAAACCAGGGAGGTCGGTTCGATGCTGGAGGATA
TGCGCGGAGACTGCAAAGACAAATCATCGTTACTCGTCTCCCTGCTCAGG
CACCAGGGAATTGAAGCCGAGGTCGCAGTTCTGCTGACACGCGCGAATGG
AACAATCCCTTTTCTGCCTGGAGCTCGCTTCGATCATGCGATTGTCTGCG
TTACCGATGAGCAGGGAGTCAGACTCTGGCTCGATCCGGCTGGCGGCCCG
ATGACTTTCAAAGATCTGCCTTATAATGATCAGGGTATGCAGGCACTGTT
GTTAAATCTTCCAGCGGGAGAACTGACCACCATTTCCTGCGGCGGTCCGG
AAACTCATCAGGTACATCGGCAATGCGAGGGGAAACTGTCCGAAGACTGC
AGCTACGAGTTCGGCACCAATGTCTCAACGACAGGTGACACCGCCATGGA
ATTTCGTCTTCGCTACATCAACCGCAACGAAGAATACCAGAGCCTGACTC
TGGAACGGGAACTCGCGTCTTCTCTGACGGGAGCCCGCATCGATGCTCCT
back to top