mRNA_M-pyrifera_M_contig1005.102.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1005.102.1 vs. uniprot
Match: D8LJ81_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ81_ECTSI) HSP 1 Score: 710 bits (1832), Expect = 4.690e-232 Identity = 468/982 (47.66%), Postives = 569/982 (57.94%), Query Frame = 1
Query: 1 VRSGELQNLWYHMDRNKVSREGFRRILLEATDSLHVTFPASPCPYPTG------PVTPTSHVSHGGDSTPVGGVSVSGAKLQHVLNRAAYEENVRRA-AGSALTYGVQETQGKAGGRGGGRGYGAHVLWFGSQKPVETGQALAPSP---SRSSSKNTLPVLLERAVKRVNDMDSGQEAVSALVPDMGRAKEGMRMTRGGVQRVLHGLGVVPRSGELQQLWWSLEKGVVGDPRVTVKAFRDVLLGRATKLTLLPDWTTQGTA----------------GTGHVGHRPSDAFDRGDGSCESPGARVVREVRTALGLIRRRVRGVVRGCEDRDLTADGWVTEQAFLAVLRDQGILQQLGNVGLSALRQAIAMGAGRDKRSAP-TAVVRYTGLVGAIDSYLDTVISWDAAAVAPRLGSDGEGDKNADEKLPGGGGIVIQMSPTPHSDGNG---SPNGRQGDGSHTSPTEPLPLGP-RSSKRTDHVKL-SQNSVARAARGWDDDPPVVPLGMRHYPQKNCSMATLVGGRPMSD--RATISKVEHERERNSCAGGVGTSTGMTGALHWRDAAPA-----------LPSSANNANPRQPRLSSPSAVPGIRSSPAWGRANDVSAPDCSPIPIERQQSGSGHRGGSAARARFVPAGGSSGLGRPAWSSGRRGSEGAVYSLAGGGVSRAICWEREAEPEAQQVRTSLSGRGGGRNRGMGAA*YTFLLLVSADRKNAAKALLSDRALLAGVYRQLAGVG-GPQARDGLDRAGMVQLLRYPRLPSDLSEEEAQDLADAALSHCGTSTVRFSSLTTFLAKTA----------GSTDAPASPPFE-GVPIECGSSNHGRDFAAGRCVKELTSLRDDPIAQSIKHNIQQGRSELRLAGEDAGGRLSCAVQLRRAFRKRRKNLGGDPGGLDDCSVETSELTGVLQDMGVILNPTEAAFLIKKCRAQSAPGRRPSAGGSDAAPVRAGDVLGFFTELLT 2775
VRSGELQNLWYHMDRNKV+R+GFRRILLE+TDSL VTFPASPCPYP P + + GD TP GGVSVSGAKLQ VLNRAAYE NVR AGSA+T ++E +G GR + +PVLL+RAV+RV ++D+G+E V+ALVPDMGR +EGMR+TRGG+QRVLHGLGV+P SGELQQLWW LE+G VGDPR++V+AFRD+L GR +KL LL DW G G+G+VG D SP ++ +REVRT+LGL+RRRVRG+VRGCEDRDL+A G+VTE AF+AVL++QGILQQLG+ GLS+LR A+ +G G A TA VRYTGLVGAID+YL+ +WD + A RLG G ++ G H+D G +P R P R K+ V S N+VARAARGWD+D PVVP G+R YP+K C+MA LVG D R + + EH + S+ M A R A P+ GR+ + I +G GGS+ R F PAGG+ GL R WS GRRGS + ++G GVSR+I R+ AAKALLSDRALLAGV+RQL+G G QARDGLDRA +V+L RY R+P DLS++EA++LADA L +CG T RF+SLTTFLA+TA S DA A+ + G+PI G G D + RDDPIAQSI+ N+ QGRSELRLAG DA RLSCAV LRRAFR RR+NLGGDPGG+DDCSV S+L GVLQDMGVILNPT+AAFLI+KCR+ + PGRRP AGG D APVRAGDVL FF +LL+
Sbjct: 721 VRSGELQNLWYHMDRNKVTRQGFRRILLESTDSLPVTFPASPCPYPAAWPIGGAPSSSDAPSYASGDKTPEGGVSVSGAKLQRVLNRAAYEANVRHGVAGSAMTRALREVEGDERGRDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAEDEDDGGMPVLLQRAVRRVKELDNGEEVVAALVPDMGRVREGMRITRGGIQRVLHGLGVIPHSGELQQLWWCLERGGVGDPRISVEAFRDLLQGRTSKLVLLHDWNALGDGLAEDSFCDSNRQRALGGSGNVGGVGCDN--------SSPVSKALREVRTSLGLVRRRVRGIVRGCEDRDLSATGFVTEDAFMAVLKEQGILQQLGDFGLSSLRGAVLIGDGSPNTLADGTARVRYTGLVGAIDTYLEAATAWDKSEAAARLGVSESGTDRNGVRVAG-----EDAEAGSHADDEGGRRTPGDRXXXXXXXXXXXXXMQPPFRPGKKPIVVGAGSANTVARAARGWDNDAPVVPPGVRQYPRKKCAMAALVGNGGFGDGQRGGVREREHRNHYSP-------SSAMKDAFGLRGATPSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSGAI-------YDIYDGSAGRPRNGGSS-RVDFRPAGGNPGLERADWSGGRRGSACKIKGMSGVGVSRSI------------------------------------------RRRAAKALLSDRALLAGVFRQLSGAASGHQARDGLDRARLVKLFRYARMPLDLSQQEAEELADAVLRYCGAPTARFASLTTFLAQTAISDGGGGDGGSSFDAHANNHHKHGLPISEGRKEVGTDEEEEVLSPIVRRTRDDPIAQSIRSNVMQGRSELRLAGGDADSRLSCAVHLRRAFRTRRRNLGGDPGGVDDCSVAASDLNGVLQDMGVILNPTQAAFLIQKCRSPTTPGRRPPAGGMDEAPVRAGDVLAFFRDLLS 1632
BLAST of mRNA_M-pyrifera_M_contig1005.102.1 vs. uniprot
Match: A0A6H5KA93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA93_9PHAE) HSP 1 Score: 173 bits (438), Expect = 8.090e-42 Identity = 179/547 (32.72%), Postives = 230/547 (42.05%), Query Frame = 1
Query: 949 LAVLRDQGILQQLGNVGLSALRQAIAMGAGRDKRSAP-TAVVRYTGLVGAIDSYLDTVISWDAAAVAPRLG-SDGEGDKN----ADEKLPGGGGIVIQMSPTPHSDGNGSPNGRQGDGSHTSPTEPLPLGP--RSSKRTDHVKL-SQNSVARAARGWDDDPPVVPLGMRHYPQKNCSMATLVGGRPMSDRATISKVEHERERNSCAGGVGTSTGMTGALHWRDAAPALPSSANNANPRQPRLSSPSAVPGIRSSPAWGRANDVSAPDCSPIPIERQQSGSGHRGGSAARARFVPAGGSSGLGRPAWSSGRRGSEGAVYSLAGGGVSRAICWERE------------------------------------------------------------AEPE--AQQVRTSLSGRGGGRN---------------------------RGMGAA*YTFLLLVSADRKNAAKALLSDRALLAGVYRQLAGVG-GPQARDGLDRAGMVQLLRYPRLPSDLSEEEAQDLADAALSHCGTSTVRFSSLTTFLAKTA 2292
+AVL++QGILQQLG+ GLS+LR A+ + G A TA VRYTGLVGAID+YL+ V++WD + A RLG S+G ++N ADE G P +G G + S + P R K+ V S N+VARAARGWD+D PVVPLG+R YP+K C+MA LVG D E ER + S+ M A R P+ + I +G GGS+ R F PAGG+ GL R WS GRRGS + ++G GVSR+I + + A PE A TS RG + + A + L RALLAGV+RQL+G G Q RDGLD+A +V+L Y R+P DLS +EA++LADA L +CG T RF+SLTTFLAKTA
Sbjct: 1 MAVLKEQGILQQLGDFGLSSLRGAVVIDDGASNTLADGTARVRYTGLVGAIDTYLEAVMAWDKSEAAARLGVSEGVTNRNGVCVADEDAEAGS--------CPDHEGRRPTPGDRNLASXXXXXXXXXMQPPFRPGKKPIVVGAGSANTVARAARGWDNDAPVVPLGLRQYPRKKCAMAALVGNGGFGDGQQGGVRERERRNH-----YSPSSAMKDAFRLRGTTPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSGAIYDIYDGSAGRPRNGGSS-RVDFRPAGGNPGLERADWSGGRRGSACMIKGMSGVGVSRSIRQDMDRAAAXXXXXXXXXXSRSNDDGAVSPGDGKNSNNLLSGEGEELPPPRRRQSNTDRLKELVQAWPEVAAAPAPTSEPSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXVCVLKAVSAVVVSQFTLHPFQVGTEHAGFYRTRALLAGVFRQLSGAASGHQVRDGLDKARLVKLFCYARMPLDLSHQEAEELADAVLRYCGAPTARFASLTTFLAKTA 533 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1005.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1005.102.1 >prot_M-pyrifera_M_contig1005.102.1 ID=prot_M-pyrifera_M_contig1005.102.1|Name=mRNA_M-pyrifera_M_contig1005.102.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=656bp MDRNKVSREGFRRILLEATDSLHVTFPASPCPYPTGPVTPTSHVSHGGDSback to top mRNA from alignment at M-pyrifera_M_contig1005:18865..30306+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1005.102.1 ID=mRNA_M-pyrifera_M_contig1005.102.1|Name=mRNA_M-pyrifera_M_contig1005.102.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=11442bp|location=Sequence derived from alignment at M-pyrifera_M_contig1005:18865..30306+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1005:18865..30306+ >mRNA_M-pyrifera_M_contig1005.102.1 ID=mRNA_M-pyrifera_M_contig1005.102.1|Name=mRNA_M-pyrifera_M_contig1005.102.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3936bp|location=Sequence derived from alignment at M-pyrifera_M_contig1005:18865..30306+ (Macrocystis pyrifera P11B4 male)back to top |