mRNA_M-pyrifera_M_contig100488.101.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100488.101.1
Unique NamemRNA_M-pyrifera_M_contig100488.101.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A8D1BJT9_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1BJT9_PIG)

HSP 1 Score: 112 bits (279), Expect = 1.730e-30
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:   58 VRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            +RAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV
Sbjct:   11 IRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 68
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: D7FP92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP92_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.000e-28
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 HLSFFPTNNVWSVPAMCHSVRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            H    P +  W      + +RAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTH+PA+TGIIRHVLQQLE+LKV
Sbjct:   47 HKEMCPYDQDW------YYIRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHKPAATGIIRHVLQQLEALKV 117
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A835ZNM6_9STRA (Ribosomal protein S19e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNM6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.080e-20
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   58 VRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            VRAAAVARKVYLRPGRGVGGL+KAFG+  RRGT TN H  AS G+IRH+LQQLE++ V
Sbjct:   60 VRAAAVARKVYLRPGRGVGGLTKAFGSVERRGTRTNHHARASGGLIRHILQQLETMSV 117
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A7S0REN0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0REN0_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 1.280e-14
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   58 VRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            +RAA++AR++YLR GRGVGGL K +G K RRG+  N H  AS  IIRH+LQQLE LK+
Sbjct:   79 IRAASIARQIYLRGGRGVGGLRKRYGGKVRRGSRPNLHGQASGSIIRHILQQLEILKI 136
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A7S3LIR0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIR0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.600e-13
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 HLSFFPTNNVWSVPAMCHSVRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            H    P +  W      + +RAA++AR VYLRP  G+GGL K +G++ARRGT+T     A++G+IRH+L+QLE++ V
Sbjct:   45 HKELCPFDQDW------YYIRAASIARHVYLRPHTGIGGLQKKYGSRARRGTLTEHFHKANSGLIRHILKQLEAIGV 115
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: F0YR54_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YR54_AURAN)

HSP 1 Score: 68.9 bits (167), Expect = 3.500e-13
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 HLSFFPTNNVWSVPAMCHSVRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            H    PTN  W      + VRAA++ARKVYL+PG G+G L K +G + RRG+    ++ A+ G+IR VLQQLE  KV
Sbjct:   28 HKELAPTNEDW------YFVRAASIARKVYLKPGIGIGALRKWYGGQYRRGSRAKCYQKAAAGVIRSVLQQLEETKV 98
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A7R9TG91_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TG91_9VIRI)

HSP 1 Score: 70.1 bits (170), Expect = 5.990e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   58 VRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            +RAA++AR VY+RP  GVGG  K FG+K RRGT    HR A+ G IRH+LQQLE++KV
Sbjct:   55 IRAASIARHVYIRPDVGVGGFKKRFGSKYRRGTRAMHHRDAAGGHIRHMLQQLEAIKV 112
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A7R9SWN7_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SWN7_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-12
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   58 VRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            VRAA+VAR++YLR GRGVGGL K +G   R G+  N H  AS  IIRH+LQQLE LK+
Sbjct:   57 VRAASVARQIYLRGGRGVGGLRKRYGGTKRDGSRPNHHAIASGSIIRHILQQLEILKI 114
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BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A7S1Z1P9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1Z1P9_TRICV)

HSP 1 Score: 67.0 bits (162), Expect = 3.130e-12
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   58 VRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            +RAA++ARKVYLRPG GVG L K +G   RRGT T   R A++GIIR VL QLE +KV
Sbjct:   60 IRAASIARKVYLRPGLGVGQLQKWYGGSYRRGTRTEHFRKANSGIIRSVLIQLEGMKV 117
[Close]
BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Match: A0A8J2WX61_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX61_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.240e-12
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 HLSFFPTNNVWSVPAMCHSVRAAAVARKVYLRPGRGVGGLSKAFGTKARRGTMTNTHRPASTGIIRHVLQQLESLKV 231
            H    PT++ W      + VRAA++ARKVYL+PG GVG L K +G + RRG    T + A+ G+IR VLQQLE  KV
Sbjct:   47 HKELGPTDDDW------YFVRAASIARKVYLKPGVGVGALRKWYGGQYRRGARAKTFQRAAGGLIRSVLQQLEETKV 117
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100488.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D1BJT9_PIG1.730e-3098.28Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
D7FP92_ECTSI1.000e-2874.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZNM6_9STRA6.080e-2075.86Ribosomal protein S19e n=1 Tax=Tribonema minus Tax... [more]
A0A7S0REN0_9CHLO1.280e-1462.07Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S3LIR0_9STRA1.600e-1345.45Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
F0YR54_AURAN3.500e-1348.05Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7R9TG91_9VIRI5.990e-1360.34Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7R9SWN7_9CHLO1.000e-1262.07Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A7S1Z1P9_TRICV3.130e-1262.07Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A8J2WX61_9STRA4.240e-1249.35Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100488contigM-pyrifera_M_contig100488:131..361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.9e-22
Seed eggNOG ortholog2880.D7FP92
Preferred nameRPS19
KEGG koko:K02966
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000462,GO:0000956,GO:0001906,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0002548,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0006997,GO:0007000,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016477,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019838,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030312,GO:0030490,GO:0030595,GO:0031347,GO:0031348,GO:0031349,GO:0031369,GO:0031503,GO:0031640,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032103,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035821,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042330,GO:0042592,GO:0042742,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045088,GO:0045089,GO:0045184,GO:0045595,GO:0045824,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050657,GO:0050658,GO:0050727,GO:0050728,GO:0050729,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0050900,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051259,GO:0051262,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0060263,GO:0060264,GO:0060265,GO:0060266,GO:0060267,GO:0060268,GO:0060284,GO:0060326,GO:0061844,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071674,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080134,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097529,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsCOG2238@1,KOG3411@2759
Ec32 ortholog descriptionRibosomal protein S19e
Ec32 orthologEc-08_000310.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815500.825356-CDS-M-pyrifera_M_contig100488:130..3611622815500.825356-CDS-M-pyrifera_M_contig100488:130..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100488 131..361 +
1692277439.7043056-CDS-M-pyrifera_M_contig100488:130..3611692277439.7043056-CDS-M-pyrifera_M_contig100488:130..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100488 131..361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100488.101.1prot_M-pyrifera_M_contig100488.101.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100488 131..361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100488.101.1

>prot_M-pyrifera_M_contig100488.101.1 ID=prot_M-pyrifera_M_contig100488.101.1|Name=mRNA_M-pyrifera_M_contig100488.101.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
HLSFFPTNNVWSVPAMCHSVRAAAVARKVYLRPGRGVGGLSKAFGTKARR
GTMTNTHRPASTGIIRHVLQQLESLKV
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mRNA from alignment at M-pyrifera_M_contig100488:131..361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100488.101.1 ID=mRNA_M-pyrifera_M_contig100488.101.1|Name=mRNA_M-pyrifera_M_contig100488.101.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig100488:131..361+ (Macrocystis pyrifera P11B4 male)
CACTTGTCCTTTTTCCCTACAAATAACGTGTGGTCTGTGCCTGCAATGTG
CCACTCGGTGCGAGCAGCCGCGGTAGCCCGCAAGGTGTACCTTCGCCCCG
GGCGCGGCGTCGGCGGACTGAGCAAGGCTTTCGGCACGAAGGCGCGCAGG
GGGACCATGACCAACACCCACAGGCCGGCTTCCACGGGAATCATCCGCCA
CGTGCTTCAGCAGCTCGAGTCGCTCAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100488:131..361+

>mRNA_M-pyrifera_M_contig100488.101.1 ID=mRNA_M-pyrifera_M_contig100488.101.1|Name=mRNA_M-pyrifera_M_contig100488.101.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig100488:131..361+ (Macrocystis pyrifera P11B4 male)
CACTTGTCCTTTTTCCCTACAAATAACGTGTGGTCTGTGCCTGCAATGTG
CCACTCGGTGCGAGCAGCCGCGGTAGCCCGCAAGGTGTACCTTCGCCCCG
GGCGCGGCGTCGGCGGACTGAGCAAGGCTTTCGGCACGAAGGCGCGCAGG
GGGACCATGACCAACACCCACAGGCCGGCTTCCACGGGAATCATCCGCCA
CGTGCTTCAGCAGCTCGAGTCGCTCAAGGTGCACTTGTCCTTTTTCCCTA
CAAATAACGTGTGGTCTGTGCCTGCAATGTGCCACTCGGTGCGAGCAGCC
GCGGTAGCCCGCAAGGTGTACCTTCGCCCCGGGCGCGGCGTCGGCGGACT
GAGCAAGGCTTTCGGCACGAAGGCGCGCAGGGGGACCATGACCAACACCC
ACAGGCCGGCTTCCACGGGAATCATCCGCCACGTGCTTCAGCAGCTCGAG
TCGCTCAAGGTG
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