mRNA_M-pyrifera_M_contig10037.79.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10037.79.1
Unique NamemRNA_M-pyrifera_M_contig10037.79.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10037.79.1 vs. uniprot
Match: D7G8S2_ECTSI (Molecular chaperone, heat shock protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8S2_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.720e-11
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 MFRCPVCDAKGKIGTTLGFGGTTCSLCQGRCYLRREP 111
            M RCPVC+  GK GTTLGFGGTTC+LC G+C+LR EP
Sbjct:    1 MTRCPVCEGSGKTGTTLGFGGTTCALCHGKCFLRTEP 37
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10037.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8S2_ECTSI7.720e-1172.97Molecular chaperone, heat shock protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10037contigM-pyrifera_M_contig10037:4093..10461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D7G8S2
Hectar predicted targeting categoryother localisation
EggNOG OGs2C3YS@1,2SZEP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size408
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10037.79.1prot_M-pyrifera_M_contig10037.79.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10037 4093..10461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815499.8017075-CDS-M-pyrifera_M_contig10037:4092..42301622815499.8017075-CDS-M-pyrifera_M_contig10037:4092..4230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10037 4093..4230 +
1692277439.292732-CDS-M-pyrifera_M_contig10037:4092..42301692277439.292732-CDS-M-pyrifera_M_contig10037:4092..4230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10037 4093..4230 +
1622815499.8141143-CDS-M-pyrifera_M_contig10037:9057..91711622815499.8141143-CDS-M-pyrifera_M_contig10037:9057..9171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10037 9058..9171 +
1692277439.301903-CDS-M-pyrifera_M_contig10037:9057..91711692277439.301903-CDS-M-pyrifera_M_contig10037:9057..9171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10037 9058..9171 +
1622815499.8258762-CDS-M-pyrifera_M_contig10037:10305..104611622815499.8258762-CDS-M-pyrifera_M_contig10037:10305..10461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10037 10306..10461 +
1692277439.3100069-CDS-M-pyrifera_M_contig10037:10305..104611692277439.3100069-CDS-M-pyrifera_M_contig10037:10305..10461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10037 10306..10461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10037.79.1

>prot_M-pyrifera_M_contig10037.79.1 ID=prot_M-pyrifera_M_contig10037.79.1|Name=mRNA_M-pyrifera_M_contig10037.79.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MFRCPVCDAKGKIGTTLGFGGTTCSLCQGRCYLRREPTACPSCDAKGGFA
SLFGLKWNTCRLCHGVKYLIDKPFPCPKCRATGLVKGLGGVFSSPCDLCD
RQRFLKHMHGRCIKCNFSSTLTKLFRKCTNCTGIG*
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mRNA from alignment at M-pyrifera_M_contig10037:4093..10461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10037.79.1 ID=mRNA_M-pyrifera_M_contig10037.79.1|Name=mRNA_M-pyrifera_M_contig10037.79.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6369bp|location=Sequence derived from alignment at M-pyrifera_M_contig10037:4093..10461+ (Macrocystis pyrifera P11B4 male)
ATGTTCCGGTGTCCTGTGTGTGACGCGAAGGGGAAAATTGGCACAACGCT
CGGCTTTGGGGGCACTACGTGCAGCCTCTGCCAGGGGAGGTGCTACCTCA
GGCGGGAGCCCACGGCGTGCCCTAGTTGTGATGCAAAGGTGAGTTGGCGG
TTGACATCACTTTACTTCCACTCTGAAAGAGTCTTCCACGAAGTTTTACT
GTCGCTTCATGTAGCGCTATGAGCTAGAGCTGCTGCTGTGTAAAGCTCGT
GCTTACTTCACTCACCAAGTCGGTTTTTATCCTTGAAACGTGTGCGTGAC
GATGTGACGATGTTCCTCCAAGAAGCGAAGAGCGGCTCCTCTGTATTTCA
GGTGATTTCAGGTTTGAGGCCCCCACCTACTACTTCATGTACTATCATGT
GCTATTTAAACTGCACCCTCTTCTGGTACGAGGCTCTACTTTTTACCGTG
ATGTAGAGATGTAGAGCAGGCTCATGCTCGTATGTACGGCTGCTGCTGCT
GCTGCTGTCCTGGCTGGCTTTAATGTTGCAGCAGTACGATGTGTGTTTGC
TTTGCACAGCGGTAATATAATACGTACGTACAGCAGTCTACCAGATATCA
TGCACCTGGTAATTTCGAGCAGTGGCCATAATCGGGTATACCCGATGGCT
TTGTGGCCAAAATCGGGTACCTTTCTTTTTCAGTGACCGCGACGGCCTCA
GGACGCCATCTCATTGGCCGACGCCGACCACCACCCGATGCTGGCCGCAT
TTGCGCCGGGTATACCCGATTTTGGCTACTTACCCCAAGAGGTACCCGAT
TATGGTGCCCACCTACCCGAGAATGGCCAGACTATTCGACCACAACGACC
AACCACCACCTCGGGGTTCATACCTCTCGTCTCGACGAAGACGGGCGAGA
ACGCGAGAACCATCCGCGTGATGTCCATGATAAGATTCATTCTAGACTTG
TTCGTTCGCTCTCTCAGTTGCTCTCTGCTGCGGTGCTGTACCAACCACAC
ACTGACCACCGCTCTCCCACCCTCTCCTCTCCTCTCCTCTCCCAGACCAC
AGCTCGCACAGCCCTCTCTCTCCCCTTCTTCCGAACCAAAAGCAACCCAA
GGACAGCAGCAGTTAGTAGTGACAGATCATGGGCGACGCTACCAACTTCG
TGACAAATAAAGTGCTATCCAGACACAAGGAGTGGGCGTTGCTATGCAAC
ATCTCTGCTTATGTATGTCCACGCTGGAATTCTCATTGAAGGCAGGGTGT
GTCCCAGGCGTTATTTTCGTCCGACCCTTCTTAACAGTCAATATCGTACT
GGTAAGTAAGTGCTGTCTCGTACTACTGCTGTAGTCATCGTGCATCTTTT
TGACACGCACGCGCCGGGTTTTGTTCGGTGCTTCGGGCAGTACACATATC
TTGAATAAAACATTCGTATAACAGATAGCAGGTACTGAAATGTTGCACGA
TGACGGACGAACTATTACGGGGGGCCATAGTAAATAGGACCAAATATTGT
TAGTAAAAATATGGAAATATATGCTTTTTTGTGTTTAAGGTAGGTCCTAT
TAACTATGGTCCCCTGTAATACTTTTTCGTACCGGGGGTATGAGCTATGA
GTCGATTTTAGGAAGTTAATGTTTTGTATCGTCAACTATTTTTGCAGTGT
ACCAGAGAGCTATTATGTTATTAAAAATAATTGCGGTGAGTACGAGGTCG
GCTCGCGTACAGCAGCAGTACACACAACTTCAAAGGTCGTGCGAGTGTCA
CTATACACCCAGTACCAGTCATTTCGAGCCTCGATACTCCAGGTAACTCA
ACTGGGTATACTGCAAAATATTGACGATACGCAACATTAACTTCCTAGCA
AATCGACGTATCGCGTCTGCCAGTCAGGGAGTACCTACGTATAATATAAT
ATTTACGAGTACATCGGAAATCTCCGTGGCACTCTGTAGCCCCTCTCTCG
CGCACCCGACCAAGTACCAGGTACAAGGTACCGTGCTATTTATATGTTTA
GGTTGTTTTTGTTGCCCACTTTCGACGGCGGATTTCTCGCCTACTCGAGC
CACGAAAACACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGTGACATGACACTTCCAGTTCACCCTTGTCGGTCAATGTATTGTTT
TGTTTTCCCCTTGAATCAGCAGTTCCGAAGGGCGGACGGTCTTCAAATCG
TCCCTGTCCCCGTCTGTTCAGATATGTACAAGTACCGGTACTGGTATATC
GACCAAATAAATATTGCTCCGGTTACAGAAAGGAAAAATTCATCCCGCCG
GAGGACCGGACGGACGCCCGGACAAATGAAATGCTGGTGTATTACAGCAG
TGCTTGGTGTAATTCAGCTCGAAACCGCACTGATTGCAACCAAATGACGC
ACGTGATAGTCGAGCCGAGAAGGCGATCTCTGGCGATCTTGCCCTACGGC
ACCATGATGCTCGTAGCGGTGGGAAGTACGAGAGTGATCATCGTCCTTGT
GTGTAGCTGCGGGGAGTTTCTTGTGCGTTTTGGTGTCATTCGTCAGAAAT
TGTGGCCCTCGCCTCAATTCTGGTCCGACCAGCCAGCTTGTGCCCTTCTC
CGGCCTCCAGACTGCAGGGTATTGGGGAGAAGTCGATGCGTTTGACAGGC
GACGCCAGACCAAGCAGGCTCATCGCGCAGGGTTACTGCTGTGGTGATAT
CATGGAGATTGCGCGGTCCACGTTCTCAAACGGCCTTGTGCGGCAGGAGT
TACGACTTTGCTGAGTACTGTTTGGTAGGAACAGAGGAAGTCAAAATGCA
GGCGTGAGCCTCGAGAATGCCACGACGACTCCATACCACGGCAGTGGCCG
CACCATGATTTTGAGGCTGCAGCTCGACGCTGCAACGCCCGCTCTCATAC
GTGTATTGTGTGGGAAGGATACGACGCTTAAACCGGCGCCATGTATTAAT
GATGGGTCTTGAAGCCGATATTGGCCGTGAGAGTTTGATATGGAGTGTGA
CCAGGGATTCATTTATTTCCCTCGTTCCGTCACGTTGACGCTCTTTCAAG
GGGCCGGCACCATCCCGAGTGTGCAACTCGGAGGGGCTGACCTTCGGGAA
AGGCTGAGTCATGCCCTGATTCAGATTCGGCATATTGGATGGTTTGGTCT
GGCGTTACTTGACGAAGGCAGCGACTTTCTCAGCCTCCCGTTCACCCGAT
ATACCACAGAAACTACACAGAACCCTCGAACGACCACATTTTGTACGTGG
AATAGTGTGCTCGTACTCGTACGTACGAGAGGTACCGCAGTCTCGTAGGT
AGTGTTTCTTGTTTTGTAGACCCGTTCTCTTGTTTTCATGTGATTTTTTA
CAGCAGTACTAAAACCGCAACAATATTAACAAAGATATTCACCAACCGAA
CCAAAGAATAGGCATGCCTCTACGATACAAACCCCTTCCCATAACCCCCC
GCCCTTAATGATTCCTTTGGGTATGTACGTGGCCGGTAGGACTCGTCTTG
CTTGTTTCTCGTTCTCGCGACAAGTACAGCAAGCAGTGGGTGCGGACGTG
CAGACCTGGAATAGAGCCACCACGTATGAATATCATGATGTGTCTCGATA
AGAGACCCGCAGATGGATGATGACACCCAGTGATCGTGAGATACATTTGC
CTTGTTCAATGAAACATAAAAGAGAAGGATGGCATATGGCGCAGACGGTC
TTGTGTATATTCCAACATATTCAATACGGTACGTTCTGATAGTACCGTTG
TATATAGCAAGTGTTAATAGTATTTATACTATTGATATATAGCTCTCAAG
TACTGCCCTCAATCCTTCCGTGAAAGTCAGGCACCACGGCGGCACGGCAC
TCATGTTGTGTCTATTTTTATAGTAGATTCATTCCTGACCGTGCACGAGT
GTATGGCATACAAGGGGTTGATTTTTGAGCTCAACGAGATCACCGCGGTC
GCTCTTGCTCAATCGTACCGGTACTGACTACACCCAACTTCCTGCTTTTC
TCGAAAACTTGAGTGCGACATCCGACCAGCGCTATCGTCCCGTGACAACA
TCCCTCAAATACTCCCTACAAGTACGCATTCATATTTTACGAGTATATAC
TGCACAAGCATCTCGTAAGATTGGTACTCCCACCCGACAGATGGACGTTT
CAAGCTTTTCCGCCTACACCAAACCCTCGACACCGTCCCCCGCCCCCCGC
CCCCGCCCTCCCCGCAGCATGGGGTTTCCCTGAAATGTTCAACGGCACTT
GACATTACACCACCTATGTCTCGAGAAACATGAAACGTAGAGTCCTGGTG
TCGTTTTGCATATAAATTACTTCGCAGGAGATTCATTCGCGTCGGCCGTT
GCCTCGCCTCCGGGCTGACATAGCTGGTGGCACAGACGGCACACCCCCTC
CCCACCCCTCCTGCTCCTCTCGCCCTGGTCGAGTGGTTTAGCCTATAGTA
CCATAGGATCCCCCACCCCCTCGCTCACACCTGAGCTCGGAAGACTCCTC
TGCATCTCGAGCTGCCTGTGTCACAAGGAGAGGGCTTTGATTGGTGCGCC
TGAGCTCTCAAGACAGATGTGCCTCAAGCTGTGTTTCGAGAAGAAGACCG
TCCCACGCATGGGACAGATCACGAACTCCTGTAGGTCATCTAGATGCTAT
GTTCGCCGTTTTGAGATGATGATCAAGACCCGCATCATACCGATCATACA
GACCATGCAGATCATGCAGATCCCACCCGGCGGAAATGTCTGCCACGAGT
CGTGCAGATCATGTTATTCAGGTACCTGTTAATTGTACATGGTACATACT
GGGTATCCATCTGCCCTAAAAAATTATGGTATAAGTATGGTATAATACAT
CGTCCATTGGGGATCTGCCATGCTCGATGTGTGATATTTGATTGCCTCAC
CCTCCACCGGCATCGCCTGTGTTGTTGCGCTTTGATTCTGCTCCGCCGAC
GGGACACCAACGCAGGGAGGGTTTGCGTCGCTGTTCGGGCTGAAGTGGAA
CACGTGCAGGCTGTGCCACGGCGTCAAGTACCTCATAGACAAGCCGTTCC
CCTGCCCCAAGTGCAGGGCCACTGGCCTGGTGAGTCTTCATGCTGCGCAG
TTTCGGGCATTGAAACACGAAACGCTCTGAACATGCGCGGGTATGTGCAT
GTATTGTAGAGAGAGAAGGCATTTCCTGCCCGCAGTTTTTTCAACTGGTC
CATATTTTAGGTTGTATTTTTTCAATGGGGAAAAATCCTTGTGGCGTCTG
ATGCGGGAAACAGCGAAATACACGCAGCTTCAGGTACAGTAGGGGTTTTC
TCCGTTGTTGTTCAGGTGTGCGCATACGTATTATTCATACCTGGATATTT
CCCGGGTAGTATTTAGTTTCCAAGTGATACGGGATGGTATTCCACAGCCC
GTACTACCGTTTCTTTGCGTGCTGGTACTGCTGTGGTTCAAGTCTTTCTT
CGTATTACGGGGGGCCATAGTAAATAGAACCGAATATAGTTAGTAAAAAT
AGGTAAATATATAGGTTTTGTGTGTACCGTAGGTCCTGTTTACTATGGCC
CCCCGAAATAGTAATTTTCTTCCATCGGGGGACGCTGTTTTTCTAAAGTC
GGTTTTGTGGTCACCATTTACGTTTCAGGGAAATGTGCTAGTGTACTGTA
GCAATGTCATCATTAGAAGTAGGCAGCTGCCTCGAAAAAAATGTCATGTG
GTCCATTCACTTTTTTTGGTTGGAAAGTGCGCGCCCTTGCGTTCACAGAC
CTGCTTTGTTCGTCTACCCCCCCTTCTTGCACAGCAGCGCACAAAACTGC
AGACTTTAAGAAGCAGCGAGAGAGATCAAGAGGCTGAATTGCACTTGCAA
GAAGCAACGAGAGAGAGAGCAAGAAGCTGATGGCGTGCTCTTTCGCCTCT
CTCCCCCTTCGCTGCTTCCTCTCGCGTCCTTTGTACCTCTTGTTTGTTTT
TTAGCCTCTGGTGAACGGGGTAAAACGATTTTGTTTGAGCTCACGACACT
CACACATCCCTCGTGTGTCAGTTTCAGTTCGGTGGTAGATTTCAACATTG
CTGACGGTAGCAGCAGCCCACGACTGGCGTGGCGCGACGGCAGCGCGAGT
TCCCGTGCCCCCGGCGGCGTGAGTACAGCCAGTACCTCTGTTTACACATA
GCCTCTGTTTCTCTGACTCGCTTTCTCCCTCGTGGGCGCTGCTTGCGATC
GTTGGTTTGGCAGGTAAAGGGTCTAGGCGGGGTGTTCTCCTCCCCTTGCG
ACCTGTGCGACAGACAGCGCTTCCTCAAGCACATGCACGGTCGCTGCATT
AAGTGTAACTTCTCCTCGACCCTCACCAAGCTCTTCCGCAAGTGTACCAA
CTGCACCGGCATTGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10037:4093..10461+

>mRNA_M-pyrifera_M_contig10037.79.1 ID=mRNA_M-pyrifera_M_contig10037.79.1|Name=mRNA_M-pyrifera_M_contig10037.79.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig10037:4093..10461+ (Macrocystis pyrifera P11B4 male)
ATGTTCCGGTGTCCTGTGTGTGACGCGAAGGGGAAAATTGGCACAACGCT
CGGCTTTGGGGGCACTACGTGCAGCCTCTGCCAGGGGAGGTGCTACCTCA
GGCGGGAGCCCACGGCGTGCCCTAGTTGTGATGCAAAGATGTTCCGGTGT
CCTGTGTGTGACGCGAAGGGGAAAATTGGCACAACGCTCGGCTTTGGGGG
CACTACGTGCAGCCTCTGCCAGGGGAGGTGCTACCTCAGGCGGGAGCCCA
CGGCGTGCCCTAGTTGTGATGCAAAGGGAGGGTTTGCGTCGCTGTTCGGG
CTGAAGTGGAACACGTGCAGGCTGTGCCACGGCGTCAAGTACCTCATAGA
CAAGCCGTTCCCCTGCCCCAAGTGCAGGGCCACTGGCCTGGGAGGGTTTG
CGTCGCTGTTCGGGCTGAAGTGGAACACGTGCAGGCTGTGCCACGGCGTC
AAGTACCTCATAGACAAGCCGTTCCCCTGCCCCAAGTGCAGGGCCACTGG
CCTGGTAAAGGGTCTAGGCGGGGTGTTCTCCTCCCCTTGCGACCTGTGCG
ACAGACAGCGCTTCCTCAAGCACATGCACGGTCGCTGCATTAAGTGTAAC
TTCTCCTCGACCCTCACCAAGCTCTTCCGCAAGTGTACCAACTGCACCGG
CATTGGGTGAGTAAAGGGTCTAGGCGGGGTGTTCTCCTCCCCTTGCGACC
TGTGCGACAGACAGCGCTTCCTCAAGCACATGCACGGTCGCTGCATTAAG
TGTAACTTCTCCTCGACCCTCACCAAGCTCTTCCGCAAGTGTACCAACTG
CACCGGCATTGGGTGA
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