mRNA_M-pyrifera_M_contig100310.72.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100310.72.1
Unique NamemRNA_M-pyrifera_M_contig100310.72.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A7Y5FBH0_9BACT (Lysophospholipid acyltransferase family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5FBH0_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 8.430e-18
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 IVRQPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRPRLAREWASK 213
            + R   G+Y + +S P+  +R+   R  LV ++Q+CQD+IE  VR +PEQWLWLHRRWK RPRL  EW+ K
Sbjct:  233 MTRDARGHYTLRFSSPVALERTGDFRADLVAITQRCQDLIEEQVRAHPEQWLWLHRRWKARPRLEEEWSRK 303          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A7C1CLI1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CLI1_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 1.880e-17
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 IVRQPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRPRLAREWASKEEADARRRDAAKP 252
            IVR+P+GNY +E+ + +E   S      L   +Q+CQD +E ++R +PEQWLW HRRWKKR RL REWA +  A+ +R++  +P
Sbjct:  233 IVREPNGNYSVEFFQALELAYSGDTLTDLQTNTQRCQDALEAIIRNHPEQWLWFHRRWKKRERLEREWAERL-ANRKRKNDTQP 315          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A7V2Y1K1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y1K1_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 1.570e-16
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 IVRQPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRPRLAREW 204
            I R PD  Y +E+  PIE   +   R+ LV  +Q+CQD +E +VR+ PEQWLW+HRRWK+RP L  EW
Sbjct:  231 ITRDPDDGYTLEFLPPIEMVNTGRTREDLVVNTQRCQDALEAIVRRAPEQWLWIHRRWKERPHLEAEW 298          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A2A5DU89_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5DU89_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 8.220e-15
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 IVRQPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRPRLAREWASKE 216
            + R+ DG YE  +   ++ + +  +R  L+ ++QQCQD IE ++R  PEQWLW+H R+K RP+L  EWA+K+
Sbjct:  233 MTREADGVYEFTFHPAMKLELTGSMRQDLIGITQQCQDAIEEIIRACPEQWLWMHNRFKPRPKLEAEWAAKK 304          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A7T0C2Z9_9BACT (Lysophospholipid acyltransferase family protein n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0C2Z9_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 2.980e-11
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   10 QPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRPR 189
            Q DG+Y ++Y   +  D+    ++ +++ +Q+CQ+ IE  +RK PE W+W+HRRWK RPR
Sbjct:  246 QKDGSYRVQYGPELRIDKGGDKKEAILNGAQECQNYIEAEIRKQPEAWMWIHRRWKTRPR 305          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A2M7P520_9DELT (Uncharacterized protein n=3 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2M7P520_9DELT)

HSP 1 Score: 67.0 bits (162), Expect = 4.760e-11
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   10 QPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRP 186
            +PD  Y +E   PI  +R+  L + L + +Q+C DV ER++R+ PEQW+W+H+RWK RP
Sbjct:  274 RPDLTYGIECGPPIVVERTGNLEEDLFNTTQRCSDVYERIIRRFPEQWVWMHKRWKTRP 332          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A2V7UUI3_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7UUI3_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-10
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   13 PDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRPR 189
            PDG Y + Y   +EF R+   R+ ++ ++Q+C  +IE  +R+ PE W+W+HRRW+ RPR
Sbjct:  242 PDGRYRIRYLPEVEFQRTGDTREDILALTQRCTRIIEDQIREQPEFWVWMHRRWRTRPR 300          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A3M1K3E9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M1K3E9_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 4.320e-10
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    7 RQPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRPR 189
            R  DG + + +  P++ DR+ PLR+    ++    + IE  +R+ PEQW W+HRRWK +PR
Sbjct:   57 RDADGRFRVRFEPPVQVDRALPLREATWHLTAALTERIEAAIRRAPEQWFWVHRRWKNQPR 117          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: E1YD15_9DELT (Uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=E1YD15_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 1.010e-9
Identity = 23/59 (38.98%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    4 VRQPDGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKK 180
            +R+ +    + +  P++  R+K LRD L+  +Q   DV+E+++R+ P+QWLW+H+RWKK
Sbjct:  222 IREKNNQLGIIFEPPVKITRTKSLRDDLITNTQAINDVVEKIIREYPDQWLWMHKRWKK 280          
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Match: A0A7X1H7B7_9DELT (Lysophospholipid acyltransferase family protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7X1H7B7_9DELT)

HSP 1 Score: 62.8 bits (151), Expect = 1.440e-9
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   16 DGNYEMEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKKRP 186
            D  YE+E  EPI +  +      ++  +Q+C DV E+++R++PEQW+W+HRRWKK+P
Sbjct:  242 DLTYEIESFEPIYYIDTGDKGKDIITFTQKCSDVCEQMIRRHPEQWVWMHRRWKKQP 298          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100310.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5FBH0_9BACT8.430e-1850.70Lysophospholipid acyltransferase family protein n=... [more]
A0A7C1CLI1_9BACT1.880e-1746.43Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V2Y1K1_9BACT1.570e-1651.47Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A2A5DU89_9BACT8.220e-1543.06Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7T0C2Z9_9BACT2.980e-1141.67Lysophospholipid acyltransferase family protein n=... [more]
A0A2M7P520_9DELT4.760e-1145.76Uncharacterized protein n=3 Tax=Deltaproteobacteri... [more]
A0A2V7UUI3_9BACT1.080e-1042.37Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A3M1K3E9_9BACT4.320e-1039.34Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
E1YD15_9DELT1.010e-938.98Uncharacterized protein n=1 Tax=uncultured Desulfo... [more]
A0A7X1H7B7_9DELT1.440e-943.86Lysophospholipid acyltransferase family protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100310contigM-pyrifera_M_contig100310:409..681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.9486613-CDS-M-pyrifera_M_contig100310:408..6511622815498.9486613-CDS-M-pyrifera_M_contig100310:408..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100310 409..651 -
1692277439.1486607-CDS-M-pyrifera_M_contig100310:408..6511692277439.1486607-CDS-M-pyrifera_M_contig100310:408..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100310 409..651 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.9603586-UTR-M-pyrifera_M_contig100310:651..6811622815498.9603586-UTR-M-pyrifera_M_contig100310:651..681Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100310 652..681 -
1692277439.1593473-UTR-M-pyrifera_M_contig100310:651..6811692277439.1593473-UTR-M-pyrifera_M_contig100310:651..681Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100310 652..681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100310.72.1prot_M-pyrifera_M_contig100310.72.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100310 409..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100310.72.1

>prot_M-pyrifera_M_contig100310.72.1 ID=prot_M-pyrifera_M_contig100310.72.1|Name=mRNA_M-pyrifera_M_contig100310.72.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MEYSEPIEFDRSKPLRDGLVDVSQQCQDVIERLVRKNPEQWLWLHRRWKK
RPRLAREWASKEEADARRRDAAKPNRPVSN*
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mRNA from alignment at M-pyrifera_M_contig100310:409..681-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100310.72.1 ID=mRNA_M-pyrifera_M_contig100310.72.1|Name=mRNA_M-pyrifera_M_contig100310.72.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig100310:409..681- (Macrocystis pyrifera P11B4 male)
ATCGTCCGGCAACCCGATGGCAACTACGAAATGGAATATTCGGAACCGAT TGAATTTGATCGGTCCAAACCTCTGCGCGACGGTTTGGTCGACGTCTCGC AACAATGCCAAGATGTCATCGAACGATTAGTCCGGAAGAACCCCGAACAA TGGTTGTGGCTTCATAGAAGATGGAAAAAGCGACCACGCTTGGCACGGGA ATGGGCATCGAAGGAAGAAGCCGATGCGCGTCGAAGAGATGCCGCTAAAC CGAATCGCCCGGTTTCCAATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100310:409..681-

>mRNA_M-pyrifera_M_contig100310.72.1 ID=mRNA_M-pyrifera_M_contig100310.72.1|Name=mRNA_M-pyrifera_M_contig100310.72.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig100310:409..681- (Macrocystis pyrifera P11B4 male)
ATGGAATATTCGGAACCGATTGAATTTGATCGGTCCAAACCTCTGCGCGA
CGGTTTGGTCGACGTCTCGCAACAATGCCAAGATGTCATCGAACGATTAG
TCCGGAAGAACCCCGAACAATGGTTGTGGCTTCATAGAAGATGGAAAAAG
CGACCACGCTTGGCACGGGAATGGGCATCGAAGGAAGAAGCCGATGCGCG
TCGAAGAGATGCCGCTAAACCGAATCGCCCGGTTTCCAATTAAATGGAAT
ATTCGGAACCGATTGAATTTGATCGGTCCAAACCTCTGCGCGACGGTTTG
GTCGACGTCTCGCAACAATGCCAAGATGTCATCGAACGATTAGTCCGGAA
GAACCCCGAACAATGGTTGTGGCTTCATAGAAGATGGAAAAAGCGACCAC
GCTTGGCACGGGAATGGGCATCGAAGGAAGAAGCCGATGCGCGTCGAAGA
GATGCCGCTAAACCGAATCGCCCGGTTTCCAATTAA
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