mRNA_M-pyrifera_M_contig100302.71.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100302.71.1
Unique NamemRNA_M-pyrifera_M_contig100302.71.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: UPI000CE2717D (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE2717D)

HSP 1 Score: 59.3 bits (142), Expect = 1.030e-9
Identity = 27/78 (34.62%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 AEVRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            + V +R++   + AVV +SG  + ++ ++R  K+ EA+K+ A +Q+ +G + + A +NPPFTLP+ R NE+ + +  K
Sbjct:   19 SSVTIREVPRKIIAVVAFSGFVTDEEVKQRESKLREALKNDAQFQIKEGGSVEIAQYNPPFTLPFQRRNEISLEVEKK 96          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: A0A6P4BI61_ZIZJJ (heme-binding-like protein At3g10130, chloroplastic n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4BI61_ZIZJJ)

HSP 1 Score: 61.2 bits (147), Expect = 3.160e-9
Identity = 28/76 (36.84%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 VRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            VR+R++   + AVV +SG  + +D ++R  K+ EA+K+   +Q+ +G + + A +NPPFTLP+ R NE+ + + +K
Sbjct:  230 VRIREVPRKIVAVVAFSGFVTDEDIKQRETKLREALKNDRQFQVKEGTSVEVAQYNPPFTLPFQRRNEIAIEVESK 305          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: A0A2N9HP98_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HP98_FAGSY)

HSP 1 Score: 60.1 bits (144), Expect = 6.080e-9
Identity = 25/78 (32.05%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 AEVRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            + V++++++  + AV+ +SG  + ++ ++R  K+ EA+K+ A +Q+ +G + + A +NPPFTLP+ R NE+ + +  K
Sbjct:  173 SSVKIKEVQRKISAVLAFSGFVTDEEVKQRESKLREALKNDAQFQIKEGASVEIAQYNPPFTLPFQRRNEIALEVEKK 250          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: UPI001E890667 (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E890667)

HSP 1 Score: 60.5 bits (145), Expect = 7.320e-9
Identity = 28/76 (36.84%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    7 VRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            VR+R++   + AVV +SG  + +D + R  K+ EA+K+   +Q+ +G + + A +NPPFTLP+ R NE+ + + +K
Sbjct:  585 VRIREVPRKIVAVVAFSGFVTDEDIKRRETKLREALKNDRQFQVKEGTSVEVAQYNPPFTLPFQRRNEIAIEVESK 660          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: UPI001929E506 (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E506)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-8
Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 AEVRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            + VR++++   + AV  +SG  +  D + R  K++EA+K+   +QL +G   + A FNPPFTLP+ R NE+ + +  K
Sbjct:  216 SSVRIKEVPRKIVAVTAFSGLVTDHDVKIREAKLHEAIKNDTQFQLKEGALVEIAQFNPPFTLPFTRRNEIALEVERK 293          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: A0A834W3C4_9FABA (Heme-binding-like protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W3C4_9FABA)

HSP 1 Score: 59.7 bits (143), Expect = 1.110e-8
Identity = 27/78 (34.62%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 AEVRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            + VR++++   + AVV +SG  + ++ ++R QK+ EA+K    +Q+ +G + + A +NPPFTLP+ R NE+ + +  K
Sbjct:  222 SSVRIKEVPRKIVAVVAFSGLVNDEEVKQREQKLREALKRDREFQVKEGSSVEVAQYNPPFTLPFQRRNEIALEVERK 299          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: A0A7N2M6K3_QUELO (Uncharacterized protein n=7 Tax=Fagaceae TaxID=3503 RepID=A0A7N2M6K3_QUELO)

HSP 1 Score: 58.9 bits (141), Expect = 2.070e-8
Identity = 27/78 (34.62%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 AEVRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            + V +R++   + AVV +SG  + ++ ++R  K+ EA+K+ A +Q+ +G + + A +NPPFTLP+ R NE+ + +  K
Sbjct:  217 SSVTIREVPRKIIAVVAFSGFVTDEEVKQRESKLREALKNDAQFQIKEGGSVEIAQYNPPFTLPFQRRNEIALEVEKK 294          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: A0A2P6RBZ2_ROSCH (Putative SOUL heme-binding protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6RBZ2_ROSCH)

HSP 1 Score: 58.9 bits (141), Expect = 2.070e-8
Identity = 27/76 (35.53%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 VRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            V+++++ + L AVV +SG  + ++ ++R  K+ EA+K    +Q+ QG + + A +NPPFTLP+ R NE+ + + +K
Sbjct:  219 VKVKEVPKKLVAVVAFSGFVTDEEIKQRESKLREALKDDRQFQVKQGTSVEVAQYNPPFTLPFQRRNEISLEVESK 294          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: UPI0011D2AA97 (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2AA97)

HSP 1 Score: 58.2 bits (139), Expect = 4.090e-8
Identity = 26/76 (34.21%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 VRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            VR++++ + + AVV +SG  + ++ ++R  K+ +A+KS   +++ +G + + A +NPPFTLP+ R NEV + +  K
Sbjct:  232 VRIKEVPQKIVAVVAFSGFVTDEEVKQRELKLRDALKSDGEFRIKEGTSVEVAQYNPPFTLPFTRRNEVSLEVERK 307          
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Match: UPI001263477B (heme-binding-like protein At3g10130, chloroplastic isoform X1 n=5 Tax=Anacardiaceae TaxID=4011 RepID=UPI001263477B)

HSP 1 Score: 57.8 bits (138), Expect = 5.380e-8
Identity = 26/76 (34.21%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    7 VRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGETFDRAGFNPPFTLPWLRTNEVQVPIAAK 234
            +R+R++ + + AVV +SG  + ++ + R  K+  A+K    YQ+ +G + + A +NPPFTLP+ R NE+ + +  K
Sbjct:  218 IRIREVPKKVVAVVAFSGFVTDEEVQRRGSKLRNALKDDIKYQVKEGASVEVAQYNPPFTLPFQRRNEIALEVERK 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100302.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000CE2717D1.030e-934.62heme-binding-like protein At3g10130, chloroplastic... [more]
A0A6P4BI61_ZIZJJ3.160e-936.84heme-binding-like protein At3g10130, chloroplastic... [more]
A0A2N9HP98_FAGSY6.080e-932.05Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
UPI001E8906677.320e-936.84Uncharacterized protein n=1 Tax=Ziziphus jujuba va... [more]
UPI001929E5061.080e-835.90heme-binding-like protein At3g10130, chloroplastic... [more]
A0A834W3C4_9FABA1.110e-834.62Heme-binding-like protein n=1 Tax=Senna tora TaxID... [more]
A0A7N2M6K3_QUELO2.070e-834.62Uncharacterized protein n=7 Tax=Fagaceae TaxID=350... [more]
A0A2P6RBZ2_ROSCH2.070e-835.53Putative SOUL heme-binding protein n=2 Tax=Rosoide... [more]
UPI0011D2AA974.090e-834.21heme-binding-like protein At3g10130, chloroplastic... [more]
UPI001263477B5.380e-834.21heme-binding-like protein At3g10130, chloroplastic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100302contigM-pyrifera_M_contig100302:439..675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.911277-CDS-M-pyrifera_M_contig100302:438..6751622815498.911277-CDS-M-pyrifera_M_contig100302:438..675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100302 439..675 -
1692277439.1385436-CDS-M-pyrifera_M_contig100302:438..6751692277439.1385436-CDS-M-pyrifera_M_contig100302:438..675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100302 439..675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100302.71.1prot_M-pyrifera_M_contig100302.71.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100302 439..675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100302.71.1

>prot_M-pyrifera_M_contig100302.71.1 ID=prot_M-pyrifera_M_contig100302.71.1|Name=mRNA_M-pyrifera_M_contig100302.71.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
AEVRLRQIEEHLRAVVRYSGSYSQQDGEERAQKIYEAVKSSAAYQLAQGE
TFDRAGFNPPFTLPWLRTNEVQVPIAAK*
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mRNA from alignment at M-pyrifera_M_contig100302:439..675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100302.71.1 ID=mRNA_M-pyrifera_M_contig100302.71.1|Name=mRNA_M-pyrifera_M_contig100302.71.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig100302:439..675- (Macrocystis pyrifera P11B4 male)
GCAGAGGTGCGCCTCCGTCAGATCGAAGAGCACCTCAGGGCAGTGGTGAG GTACAGCGGCAGCTACTCACAACAAGACGGCGAAGAGCGGGCACAGAAGA TCTATGAGGCCGTCAAGAGCAGTGCTGCCTACCAGCTGGCTCAAGGAGAG ACCTTCGACCGCGCAGGATTCAACCCTCCCTTCACGCTCCCCTGGCTCAG AACCAACGAAGTACAGGTCCCTATTGCAGCGAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100302:439..675-

>mRNA_M-pyrifera_M_contig100302.71.1 ID=mRNA_M-pyrifera_M_contig100302.71.1|Name=mRNA_M-pyrifera_M_contig100302.71.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig100302:439..675- (Macrocystis pyrifera P11B4 male)
GCAGAGGTGCGCCTCCGTCAGATCGAAGAGCACCTCAGGGCAGTGGTGAG
GTACAGCGGCAGCTACTCACAACAAGACGGCGAAGAGCGGGCACAGAAGA
TCTATGAGGCCGTCAAGAGCAGTGCTGCCTACCAGCTGGCTCAAGGAGAG
ACCTTCGACCGCGCAGGATTCAACCCTCCCTTCACGCTCCCCTGGCTCAG
AACCAACGAAGTACAGGTCCCTATTGCAGCGAAGTGAGCAGAGGTGCGCC
TCCGTCAGATCGAAGAGCACCTCAGGGCAGTGGTGAGGTACAGCGGCAGC
TACTCACAACAAGACGGCGAAGAGCGGGCACAGAAGATCTATGAGGCCGT
CAAGAGCAGTGCTGCCTACCAGCTGGCTCAAGGAGAGACCTTCGACCGCG
CAGGATTCAACCCTCCCTTCACGCTCCCCTGGCTCAGAACCAACGAAGTA
CAGGTCCCTATTGCAGCGAAGTGA
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