mRNA_M-pyrifera_M_contig100287.66.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100287.66.1
Unique NamemRNA_M-pyrifera_M_contig100287.66.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: UPI001CBB0724 (T9SS type A sorting domain-containing protein n=1 Tax=Aestuariivivens sp. NBU2969 TaxID=2873267 RepID=UPI001CBB0724)

HSP 1 Score: 53.9 bits (128), Expect = 4.630e-6
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    1 TVDCRDNCPSDPNKTRPGICGCGEADQDYDGDTVL 105
            T +C D CP DPNKT PG+CGCG A+ D D D VL
Sbjct:   66 TPNCLDGCPDDPNKTDPGVCGCGTAETDTDSDGVL 100
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: A0A7S2V0L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.790e-6
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:    4 VDCRDNCPSDPNKTRPGICGCGEADQDY 87
            VDC D CP+DP+KT PG+CGCG +D+DY
Sbjct:   40 VDCDDQCPADPSKTEPGLCGCGMSDKDY 67
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: A0A518LHA0_9BACT (Alpha-agarase n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A518LHA0_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.420e-5
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   16 DNCPSDPNKTRPGICGCGEADQDYDGDTVL 105
            D CP+DPNKT PG CGCG AD D DGD VL
Sbjct:  260 DGCPNDPNKTAPGDCGCGVADDDADGDGVL 289
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: A0A7C4JW05_9BACT (HYR domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C4JW05_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 4.980e-5
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   16 DNCPSDPNKTRPGICGCGEADQDYDGDTVL 105
            DNCP D NKT PGICGCG AD D DGD +L
Sbjct:  724 DNCPFDANKTEPGICGCGVADVDTDGDGLL 753
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: A0A1W9N1M1_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9N1M1_9DELT)

HSP 1 Score: 51.2 bits (121), Expect = 5.950e-5
Identity = 20/28 (71.43%), Postives = 21/28 (75.00%), Query Frame = 1 
Query:    1 TVDCRDNCPSDPNKTRPGICGCGEADQD 84
            T DC D CP+DPNKT PGICGCG  D D
Sbjct:    6 TPDCNDKCPNDPNKTEPGICGCGVPDTD 33
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: A0A2N6C3W8_9DELT (Uncharacterized protein n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A2N6C3W8_9DELT)

HSP 1 Score: 51.2 bits (121), Expect = 6.230e-5
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   16 DNCPSDPNKTRPGICGCGEADQDYDGDTV 102
            DNCPSDP+KT+PGICGCG +D D D D +
Sbjct:   23 DNCPSDPSKTQPGICGCGVSDADSDSDGI 51
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: A0A3A0CNR9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CNR9_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 6.550e-5
Identity = 22/33 (66.67%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    4 VDCRDNCPSDPNKTRPGICGCGEADQDYDGDTV 102
            +D  D CPSDPNKT PG CGCG AD D +GD V
Sbjct:  643 IDDCDGCPSDPNKTSPGACGCGVADTDTEGDGV 675
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BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Match: A0A419F2J2_9BACT (HYR domain-containing protein (Fragment) n=1 Tax=Candidatus Abyssubacteria bacterium SURF_17 TaxID=2093361 RepID=A0A419F2J2_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 8.550e-5
Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:    4 VDCRDNCPSDPNKTRPGICGCGEADQDYDGD 96
             DC DNCP+DP KT PG+CGC  AD D D D
Sbjct:    1 ADCNDNCPTDPLKTEPGVCGCDVADTDSDAD 31
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100287.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI001CBB07244.630e-662.86T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7S2V0L2_9STRA4.790e-667.86Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A518LHA0_9BACT2.420e-573.33Alpha-agarase n=3 Tax=Planctomycetes TaxID=203682 ... [more]
A0A7C4JW05_9BACT4.980e-573.33HYR domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A1W9N1M1_9DELT5.950e-571.43Uncharacterized protein (Fragment) n=1 Tax=Desulfo... [more]
A0A2N6C3W8_9DELT6.230e-568.97Uncharacterized protein n=1 Tax=Desulfobulbaceae b... [more]
A0A3A0CNR9_9BACT6.550e-566.67Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A419F2J2_9BACT8.550e-564.52HYR domain-containing protein (Fragment) n=1 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100287contigM-pyrifera_M_contig100287:307..681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815498.2935245-CDS-M-pyrifera_M_contig100287:306..6811622815498.2935245-CDS-M-pyrifera_M_contig100287:306..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100287 307..681 -
1692277438.9559639-CDS-M-pyrifera_M_contig100287:306..6811692277438.9559639-CDS-M-pyrifera_M_contig100287:306..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100287 307..681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100287.66.1prot_M-pyrifera_M_contig100287.66.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100287 307..681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100287.66.1

>prot_M-pyrifera_M_contig100287.66.1 ID=prot_M-pyrifera_M_contig100287.66.1|Name=mRNA_M-pyrifera_M_contig100287.66.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
TVDCRDNCPSDPNKTRPGICGCGEADQDYDGDTVLDCNDNCPNDPNKINP
GACPCGTPNTDSDGDGVADCNDDCPSDPFKTTPGVCGCGAPDTDSDGDGT
PDCNDQCPDDPTKTAPGACPCGADE
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mRNA from alignment at M-pyrifera_M_contig100287:307..681-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100287.66.1 ID=mRNA_M-pyrifera_M_contig100287.66.1|Name=mRNA_M-pyrifera_M_contig100287.66.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig100287:307..681- (Macrocystis pyrifera P11B4 male)
ACGGTCGATTGCCGCGACAACTGCCCGTCTGATCCCAACAAGACCCGACC
TGGCATCTGTGGATGTGGTGAGGCCGACCAGGATTATGATGGCGACACTG
TCCTTGACTGCAACGACAACTGCCCCAACGACCCCAACAAGATCAACCCT
GGCGCCTGCCCTTGTGGTACGCCCAACACTGACTCTGATGGAGACGGCGT
GGCAGACTGCAACGACGACTGCCCCAGCGATCCCTTCAAGACAACTCCTG
GCGTGTGCGGCTGTGGCGCTCCTGATACCGACTCTGACGGTGACGGAACC
CCTGACTGCAACGATCAGTGCCCCGACGACCCCACCAAGACTGCTCCTGG
AGCTTGCCCGTGTGGTGCCGATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100287:307..681-

>mRNA_M-pyrifera_M_contig100287.66.1 ID=mRNA_M-pyrifera_M_contig100287.66.1|Name=mRNA_M-pyrifera_M_contig100287.66.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig100287:307..681- (Macrocystis pyrifera P11B4 male)
ACGGTCGATTGCCGCGACAACTGCCCGTCTGATCCCAACAAGACCCGACC
TGGCATCTGTGGATGTGGTGAGGCCGACCAGGATTATGATGGCGACACTG
TCCTTGACTGCAACGACAACTGCCCCAACGACCCCAACAAGATCAACCCT
GGCGCCTGCCCTTGTGGTACGCCCAACACTGACTCTGATGGAGACGGCGT
GGCAGACTGCAACGACGACTGCCCCAGCGATCCCTTCAAGACAACTCCTG
GCGTGTGCGGCTGTGGCGCTCCTGATACCGACTCTGACGGTGACGGAACC
CCTGACTGCAACGATCAGTGCCCCGACGACCCCACCAAGACTGCTCCTGG
AGCTTGCCCGTGTGGTGCCGATGAGACGGTCGATTGCCGCGACAACTGCC
CGTCTGATCCCAACAAGACCCGACCTGGCATCTGTGGATGTGGTGAGGCC
GACCAGGATTATGATGGCGACACTGTCCTTGACTGCAACGACAACTGCCC
CAACGACCCCAACAAGATCAACCCTGGCGCCTGCCCTTGTGGTACGCCCA
ACACTGACTCTGATGGAGACGGCGTGGCAGACTGCAACGACGACTGCCCC
AGCGATCCCTTCAAGACAACTCCTGGCGTGTGCGGCTGTGGCGCTCCTGA
TACCGACTCTGACGGTGACGGAACCCCTGACTGCAACGATCAGTGCCCCG
ACGACCCCACCAAGACTGCTCCTGGAGCTTGCCCGTGTGGTGCCGATGAG
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