mRNA_M-pyrifera_M_contig100090.21.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100090.21.1
Unique NamemRNA_M-pyrifera_M_contig100090.21.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A2P6U271_CHLSO (DnaJ homolog subfamily C member 10 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U271_CHLSO)

HSP 1 Score: 116 bits (290), Expect = 6.370e-28
Identity = 70/148 (47.30%), Postives = 90/148 (60.81%), Query Frame = 1 
Query:    4 MFGGDSGGGFQFGGSGGDAGMRFA---GGNMGGGMGGMGGQPQ-----GLYSNDKHVEELTPVSASGGPYDGEVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFVGGQATEYEGARDAK 423
            +FGG  GGG Q         M F    GG MGGGM  MGG  Q     GLY ND  V++LT  +   G  +  + L+EFYAPWCGHC+ LA K+R++A  L G V+VAAVNC+  + + QQ G++G+PTIRA  GGQ  +Y G R A+
Sbjct:  132 VFGGGMGGGGQR--------MHFQFQQGGGMGGGMXXMGGGRQQRETAGLYDNDAFVQDLTDDTFPEGDTEW-IWLIEFYAPWCGHCRQLAPKWRKLAEALHGVVKVAAVNCEQQQGLCQQYGIRGYPTIRAMSGGQLVDYRGDRSAR 270
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: E1Z201_CHLVA (DnaJ homolog subfamily C member 10 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z201_CHLVA)

HSP 1 Score: 114 bits (284), Expect = 5.060e-27
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:  124 GLYSNDKHVEELTPVSASGGPYDGEVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFVGGQATEYEGARDAK 423
            GLY ND  V++LT  +   G  DG + L+EFYAPWCGHC+ LA K+R+VA  L G  +VAAVNC+  + + Q+ GV+G+PTI+AF GG   EY+G R A+
Sbjct:  176 GLYDNDAFVQDLTEDTFPEGDGDGWIWLIEFYAPWCGHCRQLAPKWRKVAEALHGVAKVAAVNCEQQQALCQEQGVRGYPTIKAFSGGHLHEYKGDRSAR 275
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A7S3QQY2_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QQY2_DUNTE)

HSP 1 Score: 110 bits (274), Expect = 1.350e-26
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:   94 GMGGMGGQPQGLYSNDKHVEELTPVSASGGPYDGE--VVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFVGGQAT--EYEGARDAK 423
            G GG G Q   LY  D +V EL+P   S  P  GE    LVEFYAPWCGHC+ LA KY++VAA L+G V+V AVNCD    +  Q GVKGFPTI+A + GQA+  EY G R AK
Sbjct:    5 GGGGWGQQGGSLYMGDPNVIELSP---SDFPSQGEKWTYLVEFYAPWCGHCQQLAPKYKQVAASLKGNVKVGAVNCDDFGDLCSQYGVKGFPTIKAIIPGQASPKEYRGDRSAK 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A2P6VLV0_9CHLO (DnaJ homolog subfamily C member 10 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLV0_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 4.700e-26
Identity = 49/100 (49.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:  124 GLYSNDKHVEELTPVSASGGPYDGEVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFVGGQATEYEGARDAK 423
            GLY ND  V++LT  +   G  DG + L+EFYAPWCGHC+ LA K+R++A  L G V+V AVNC+  + + QQ G++G+P+++AF GG+  +Y+G R AK
Sbjct:  177 GLYDNDAFVQDLTDDTFPEGDGDGWIWLIEFYAPWCGHCRQLAPKWRKLAEALHGVVKVGAVNCEQQQALCQQNGIRGYPSMKAFSGGRLHDYQGDRSAK 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A835YCA2_9CHLO (DnaJ homolog subfamily C member 10 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YCA2_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 1.070e-24
Identity = 55/100 (55.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:  127 LYSNDKHVEELTPVSASGGPYDGEVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFV-GGQATEYEGARDAK 423
            LY  D +V++L       G  D  V LVEFYAPWCGHCK+LA K+   A  L G VRV AVNCDAHK++  Q GV+G+PTI+AFV G Q   Y G R AK
Sbjct:  187 LYEGDSNVQQLGKDHFPPGSGDNWVWLVEFYAPWCGHCKALAPKWAAAAKSLHGVVRVGAVNCDAHKELCGQQGVRGYPTIKAFVPGSQPKVYNGDRSAK 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A0L7LS25_9NEOP (Protein disulfide-isomerase (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LS25_9NEOP)

HSP 1 Score: 100 bits (249), Expect = 4.880e-24
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:  124 GLYSNDKHVEELTPVSASGGPYDG-EVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFVGGQATEYEGARDAK 423
            GLY +   V ELTP +      +  EV +VEFYAPWCGHCK+L  +Y++ +  L+G  +V AVN D HK + QQ GV GFPTI+ F G + T Y G R+A+
Sbjct:   18 GLYDSSSDVVELTPSNFDRLVTNSDEVWIVEFYAPWCGHCKNLVPEYKKASRALKGIAKVGAVNADDHKSLTQQYGVSGFPTIKIFTGSKHTPYSGQRNAE 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A2V0NY05_9CHLO (DnaJ homolog subfamily C member 10 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NY05_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 2.280e-23
Identity = 60/106 (56.60%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  121 QGLYSNDKHVEELTPVSASGGPYDGEVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAF-----VGGQATEYEGARDAK 423
            Q LYS D  V EL   S   G  D  V LVEFYAPWCGHC+ LA K+R+VA KL+G VRV AVNCD HK +  + GV+G+PTI+A       GG A EY GAR AK
Sbjct:  205 QSLYSGDDAVAELDDDSFPQGDSDW-VWLVEFYAPWCGHCQQLAPKWRQVATKLKGVVRVGAVNCDVHKALCGRHGVRGYPTIKALRPRGGAGGWA-EYGGARSAK 308
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A078IQM9_BRANA (BnaAnng12480D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078IQM9_BRANA)

HSP 1 Score: 102 bits (254), Expect = 2.320e-23
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:  127 LYSNDKHVEELTPVSASGGPYDGE-VVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFVGGQAT-EYEGARDAK 423
            LY +   V +LTP +      +   VVLVEF+APWCGHCKSL   + +VA  L+G   VAA++ DAHK V+Q  GV+GFPTI+ FV G+   +Y+GARDAK
Sbjct:   29 LYGSSSPVLQLTPSNFKSKVINSNGVVLVEFFAPWCGHCKSLTPTWEKVATTLKGIATVAAIDADAHKSVSQDYGVRGFPTIKVFVPGKPPIDYQGARDAK 129
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A843WQV9_COLES (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WQV9_COLES)

HSP 1 Score: 99.8 bits (247), Expect = 3.720e-23
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:  127 LYSNDKHVEELTPVSASGGPYDGE-VVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDAHKQVAQQLGVKGFPTIRAFVGGQA-TEYEGARDAK 423
            LYS    V +LTP +      D   VVLVEF+APWCGHC++L   + + A  L+G  RVAA++ D+HK +AQ+ G+KGFPTI+ F+ G+   +Y+GARD K
Sbjct:   71 LYSPSSPVLQLTPSNFKSKVLDANGVVLVEFFAPWCGHCQALTPTWEKAATVLKGVARVAALDADSHKALAQEYGIKGFPTIKVFLPGKPPVDYQGARDVK 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Match: A0A6A7GAY5_9CRUS (Protein disulfide-isomerase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAY5_9CRUS)

HSP 1 Score: 103 bits (257), Expect = 5.570e-23
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:  127 LYSNDKHVEELTPVSASG--GPYDGEVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVAAVNCDA--HKQVAQQLGVKGFPTIRAFVGGQATE-YEGARDA 420
             Y     V  LTP +       YD  VVLVEF+APWCGHCKSL   + +VA  LQG V VAAV+CDA  +KQ+A + G+KGFPTI+ FVG ++ E Y+GARDA
Sbjct:   28 FYGKKSGVVSLTPKNFDDHVAVYDDAVVLVEFFAPWCGHCKSLKPHWEKVAKNLQGIVTVAAVDCDADENKQLAAKYGIKGFPTIKVFVGKRSPEDYQGARDA 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100090.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6U271_CHLSO6.370e-2847.30DnaJ homolog subfamily C member 10 n=1 Tax=Chlorel... [more]
E1Z201_CHLVA5.060e-2752.00DnaJ homolog subfamily C member 10 n=1 Tax=Chlorel... [more]
A0A7S3QQY2_DUNTE1.350e-2655.26Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A2P6VLV0_9CHLO4.700e-2649.00DnaJ homolog subfamily C member 10 n=1 Tax=Micract... [more]
A0A835YCA2_9CHLO1.070e-2455.00DnaJ homolog subfamily C member 10 n=1 Tax=Edaphoc... [more]
A0A0L7LS25_9NEOP4.880e-2448.51Protein disulfide-isomerase (Fragment) n=1 Tax=Ope... [more]
A0A2V0NY05_9CHLO2.280e-2356.60DnaJ homolog subfamily C member 10 n=1 Tax=Raphido... [more]
A0A078IQM9_BRANA2.320e-2351.49BnaAnng12480D protein n=1 Tax=Brassica napus TaxID... [more]
A0A843WQV9_COLES3.720e-2348.51Thioredoxin domain-containing protein (Fragment) n... [more]
A0A6A7GAY5_9CRUS5.570e-2354.37Protein disulfide-isomerase (Fragment) n=1 Tax=Hir... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100090contigM-pyrifera_M_contig100090:142..662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score113.2
Seed ortholog evalue9.6e-23
Seed eggNOG ortholog554065.XP_005852011.1
KEGG koko:K09510,ko:K09530
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005788,GO:0005911,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009506,GO:0009628,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0012505,GO:0016043,GO:0016049,GO:0016491,GO:0022414,GO:0030054,GO:0030154,GO:0031974,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0034605,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050896,GO:0051704,GO:0051716,GO:0055044,GO:0055114,GO:0060560,GO:0070013,GO:0071840
EggNOG free text desc.DnaJ molecular chaperone homology domain
EggNOG OGs34HEK@3041,37QCW@33090,COG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131
Exons2
Model size423
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100090.21.1prot_M-pyrifera_M_contig100090.21.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100090 145..662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.5118062-UTR-M-pyrifera_M_contig100090:141..1441622815495.5118062-UTR-M-pyrifera_M_contig100090:141..144Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100090 142..144 +
1692277437.7796345-UTR-M-pyrifera_M_contig100090:141..1441692277437.7796345-UTR-M-pyrifera_M_contig100090:141..144Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100090 142..144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.5255527-CDS-M-pyrifera_M_contig100090:144..3281622815495.5255527-CDS-M-pyrifera_M_contig100090:144..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100090 145..328 +
1692277437.7985554-CDS-M-pyrifera_M_contig100090:144..3281692277437.7985554-CDS-M-pyrifera_M_contig100090:144..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100090 145..328 +
1622815495.548593-CDS-M-pyrifera_M_contig100090:426..6621622815495.548593-CDS-M-pyrifera_M_contig100090:426..662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100090 427..662 +
1692277437.8264506-CDS-M-pyrifera_M_contig100090:426..6621692277437.8264506-CDS-M-pyrifera_M_contig100090:426..662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100090 427..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100090.21.1

>prot_M-pyrifera_M_contig100090.21.1 ID=prot_M-pyrifera_M_contig100090.21.1|Name=mRNA_M-pyrifera_M_contig100090.21.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
MFGGDSGGGFQFGGSGGDAGMRFAGGNMGGGMGGMGGQPQGLYSNDKHVE
ELTPVSASGGPYDGEVVLVEFYAPWCGHCKSLAGKYRRVAAKLQGAVRVA
AVNCDAHKQVAQQLGVKGFPTIRAFVGGQATEYEGARDAK
back to top

mRNA from alignment at M-pyrifera_M_contig100090:142..662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100090.21.1 ID=mRNA_M-pyrifera_M_contig100090.21.1|Name=mRNA_M-pyrifera_M_contig100090.21.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=521bp|location=Sequence derived from alignment at M-pyrifera_M_contig100090:142..662+ (Macrocystis pyrifera P11B4 male)
AGCATGTTCGGCGGAGACAGCGGGGGCGGATTTCAGTTTGGCGGCTCTGG
TGGGGACGCTGGGATGCGGTTTGCGGGCGGAAACATGGGCGGTGGCATGG
GTGGCATGGGCGGGCAGCCGCAGGGCCTGTACTCCAATGACAAGCACGTG
GAAGAGTTGACCCCGGTGAGTGCAAGTGGCGGGCCGTGTGTATGTGAGGA
TGCGGGTGTGTGTTGCGGGAGAGTGCTGACATGGAAGCGGGCGGGCGACA
ACAGGAGTCACTGCAAAAGGTGCTGCAGGCTGGAGATGACGGCGAGGTGG
TGCTTGTGGAGTTCTACGCCCCGTGGTGTGGGCACTGCAAGTCACTTGCT
GGGAAGTACCGGCGGGTGGCAGCCAAGCTGCAGGGAGCTGTACGGGTGGC
TGCGGTGAACTGCGACGCGCACAAACAAGTCGCGCAGCAGCTGGGCGTCA
AGGGGTTCCCCACCATTCGCGCGTTTGTCGGAGGACAAGCGACAGAGTAT
GAAGGAGCCAGGGACGCCAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100090:142..662+

>mRNA_M-pyrifera_M_contig100090.21.1 ID=mRNA_M-pyrifera_M_contig100090.21.1|Name=mRNA_M-pyrifera_M_contig100090.21.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig100090:142..662+ (Macrocystis pyrifera P11B4 male)
ATGTTCGGCGGAGACAGCGGGGGCGGATTTCAGTTTGGCGGCTCTGGTGG
GGACGCTGGGATGCGGTTTGCGGGCGGAAACATGGGCGGTGGCATGGGTG
GCATGGGCGGGCAGCCGCAGGGCCTGTACTCCAATGACAAGCACGTGGAA
GAGTTGACCCCGGTGAGTGCAAGTGGCGGGCCGTATGTTCGGCGGAGACA
GCGGGGGCGGATTTCAGTTTGGCGGCTCTGGTGGGGACGCTGGGATGCGG
TTTGCGGGCGGAAACATGGGCGGTGGCATGGGTGGCATGGGCGGGCAGCC
GCAGGGCCTGTACTCCAATGACAAGCACGTGGAAGAGTTGACCCCGGTGA
GTGCAAGTGGCGGGCCGTATGACGGCGAGGTGGTGCTTGTGGAGTTCTAC
GCCCCGTGGTGTGGGCACTGCAAGTCACTTGCTGGGAAGTACCGGCGGGT
GGCAGCCAAGCTGCAGGGAGCTGTACGGGTGGCTGCGGTGAACTGCGACG
CGCACAAACAAGTCGCGCAGCAGCTGGGCGTCAAGGGGTTCCCCACCATT
CGCGCGTTTGTCGGAGGACAAGCGACAGAGTATGAAGGAGCCAGGGACGC
CAAGATGACGGCGAGGTGGTGCTTGTGGAGTTCTACGCCCCGTGGTGTGG
GCACTGCAAGTCACTTGCTGGGAAGTACCGGCGGGTGGCAGCCAAGCTGC
AGGGAGCTGTACGGGTGGCTGCGGTGAACTGCGACGCGCACAAACAAGTC
GCGCAGCAGCTGGGCGTCAAGGGGTTCCCCACCATTCGCGCGTTTGTCGG
AGGACAAGCGACAGAGTATGAAGGAGCCAGGGACGCCAAG
back to top