mRNA_M-pyrifera_M_contig100062.13.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100062.13.1
Unique NamemRNA_M-pyrifera_M_contig100062.13.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: UPI001C090B1E (iron ABC transporter permease n=1 Tax=Pacificibacter marinus TaxID=658057 RepID=UPI001C090B1E)

HSP 1 Score: 219 bits (557), Expect = 3.820e-66
Identity = 106/136 (77.94%), Postives = 126/136 (92.65%), Query Frame = 1 
Query:    1 TYWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGPRR 408
            +YW+LPIG++IVVIPL+ RFLRAAF++LDP Q+EAA+ALGAPP YRF+R+TLPAI P+++LVAG+N NTILSEY+MSAFLFNVNNKPLSIALFEGARS+NPEQAAINLVYMTLIM FSY+IIS+ADR+GLG    R
Sbjct:  429 SYWILPIGYAIVVIPLMIRFLRAAFYALDPFQLEAAQALGAPPLYRFMRVTLPAIAPIIVLVAGLNINTILSEYTMSAFLFNVNNKPLSIALFEGARSANPEQAAINLVYMTLIMVFSYVIISIADRYGLGKSSGR 564
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: A0A7X4DSU7_9RHOB (Iron ABC transporter permease n=3 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A7X4DSU7_9RHOB)

HSP 1 Score: 194 bits (494), Expect = 7.430e-57
Identity = 94/132 (71.21%), Postives = 118/132 (89.39%), Query Frame = 1 
Query:    4 YWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGG 399
            +W+LPIG+++V IP++ RFLRAAF+SLDP+  EAA++LGAP  YRF+R+T+P ++PV+IL+A M  N ILSEYSMSAFLFNVNNKPLSIALFEGARS+NPEQAAINLVY++LIM FS  I++LADR+GLGGG
Sbjct:  432 FWILPIGYAVVSIPIMMRFLRAAFFSLDPALNEAAQSLGAPASYRFLRVTIPLVLPVMILIAAMTLNGILSEYSMSAFLFNVNNKPLSIALFEGARSANPEQAAINLVYISLIMAFSLGIVTLADRYGLGGG 563
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: A0A3S2UBJ5_9RHOB (Iron ABC transporter permease n=1 Tax=Rhodobacteraceae bacterium CCMM004 TaxID=2499834 RepID=A0A3S2UBJ5_9RHOB)

HSP 1 Score: 190 bits (482), Expect = 4.580e-55
Identity = 90/136 (66.18%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:    1 TYWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGPRR 408
            +YW+LPIG+++  IP++ RFLRA+F SLDP+  EAA++LGAP  YRF RITLP + PV++L++GM  N ++SEYSMSAFLFNVNNKPLSIALFEGARS+NPEQAAIN+VY+ LIM FS + I+LADR+GLG G  +
Sbjct:  432 SYWILPIGYAVGAIPMMIRFLRASFLSLDPALGEAAQSLGAPAHYRFARITLPIVAPVIVLISGMTLNGLMSEYSMSAFLFNVNNKPLSIALFEGARSANPEQAAINMVYIVLIMAFSLVTITLADRYGLGSGQEK 567
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: A0A0P7W9F4_9RHOB (Iron(III) transport system permease protein n=1 Tax=Rhodobacteraceae bacterium HLUCCA08 TaxID=1666913 RepID=A0A0P7W9F4_9RHOB)

HSP 1 Score: 170 bits (430), Expect = 1.750e-47
Identity = 81/137 (59.12%), Postives = 106/137 (77.37%), Query Frame = 1 
Query:    1 TYWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGPRRN 411
            ++W+LPIG+++V++PL+ RFLRAAF  +DP    AAR+LGAP  YRF R+TLP ++P  ILV+GM FN +++EY +SAFL+NVNN PL IA+ EGA S +PEQ A+NLVY  LIMGFS  +I  A+R GLG GPR N
Sbjct:  431 SFWILPIGYTVVILPLMVRFLRAAFIGIDPDYDLAARSLGAPALYRFRRVTLPLVVPTAILVSGMAFNDLMTEYPLSAFLYNVNNTPLPIAIVEGAMSPDPEQKALNLVYSVLIMGFSLAVILFAERIGLGRGPRIN 567
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: A0A2A3BW16_9HYPH (ABC transporter permease n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A2A3BW16_9HYPH)

HSP 1 Score: 168 bits (425), Expect = 9.270e-47
Identity = 84/136 (61.76%), Postives = 104/136 (76.47%), Query Frame = 1 
Query:    4 YWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGPRRN 411
            YW+LPIG++IV +PL+ RFLRAAF  +DP+  EAAR++GA   YR+ RI LP + P  ILVAGM FN +LSEY +SAFL+NVNNKPL IA+ + A S +PEQ A+NLVY+TLIM FS  II LA+R GLG GP  N
Sbjct:  432 YWLLPIGYAIVALPLMVRFLRAAFSGIDPAYSEAARSMGATGLYRYRRIILPLVAPTAILVAGMAFNELLSEYPLSAFLYNVNNKPLPIAIVDSALSVDPEQGALNLVYVTLIMAFSLAIILLAERIGLGKGPETN 567
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: A0A068TGS7_NEOGA (Binding--dependent transport system inner membrane component family protein n=107 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A068TGS7_NEOGA)

HSP 1 Score: 165 bits (417), Expect = 1.330e-45
Identity = 82/134 (61.19%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:    1 TYWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGP 402
            +YW+LPI ++IV +PL+ RFLRAAF  +DP+  EAAR++GA   YR+ RI LP + P  ILVAGM FN +LSEY +SAFL+NVNNKPL IA+ + + S +PEQAA+NLVY+TLIM FS  II LA+R GLG GP
Sbjct:  431 SYWLLPIAYAIVALPLMVRFLRAAFMGIDPAYNEAARSMGAAGLYRYRRIILPIVAPTAILVAGMAFNDLLSEYPLSAFLYNVNNKPLPIAIVDSSLSVDPEQAALNLVYVTLIMAFSMAIILLAERIGLGKGP 564
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: A0A0M7ARH2_9HYPH (Putative 2-aminoethylphosphonate transport system permease protein PhnV n=1 Tax=Roseibium album TaxID=311410 RepID=A0A0M7ARH2_9HYPH)

HSP 1 Score: 164 bits (415), Expect = 2.580e-45
Identity = 76/136 (55.88%), Postives = 109/136 (80.15%), Query Frame = 1 
Query:    4 YWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGPRRN 411
            +W++P  ++++++PL+ RFLRAAF  +DP   EAA++LGA   YRF RI+LP I+P V+L+AG+ FN +++EY +SAFLFNVNN+PLS+A+ +GARS++PEQ A+NLVY+TLIM  S +II LA+R  +G GP RN
Sbjct:  432 WWIVPAAYTVIIMPLMVRFLRAAFVGIDPHYGEAAQSLGASALYRFRRISLPLILPTVVLLAGLKFNDLMTEYPVSAFLFNVNNRPLSLAIVDGARSADPEQRAVNLVYVTLIMVASMVIIVLAERLSMGRGPERN 567
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: UPI001F41D71F (ABC transporter permease subunit n=1 Tax=Rhizobium meliloti TaxID=382 RepID=UPI001F41D71F)

HSP 1 Score: 163 bits (413), Expect = 4.830e-45
Identity = 76/133 (57.14%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:    4 YWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGP 402
            YW+LPIG++++++PL  RF+RAAF  +DP+  EAARA+GA  FYRF R+ LP + P   LVAGM FN +++EY +SAFL+NV+NKPL IA+ +G+ S++PEQAAI+LVY+TLIM FS ++I LA+R  LG  P
Sbjct:  363 YWLLPIGYAVIILPLTVRFMRAAFLGIDPAYEEAARAMGASGFYRFRRVILPLVAPTATLVAGMTFNDLMAEYPLSAFLYNVHNKPLPIAIVDGSVSADPEQAAISLVYVTLIMAFSLVVILLAERLALGRAP 495
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BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: UPI000FD5836B (ABC transporter permease subunit n=9 Tax=Sinorhizobium TaxID=28105 RepID=UPI000FD5836B)

HSP 1 Score: 160 bits (404), Expect = 9.830e-44
Identity = 75/133 (56.39%), Postives = 104/133 (78.20%), Query Frame = 1 
Query:    4 YWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGP 402
            YW+LPIG++++++PL  RF+RAAF  +DP+  EAARA+GA  FYRF R+ LP + P   LVAGM FN +++E  +SAFL+NV+NKPL IA+ +G+ S++PEQAAI+LVY+TLIM FS ++I LA+R  LG  P
Sbjct:  431 YWLLPIGYAVIILPLTVRFMRAAFLGIDPAYEEAARAMGASGFYRFRRVILPLVAPTATLVAGMTFNDLMAECPLSAFLYNVHNKPLPIAIVDGSVSADPEQAAISLVYVTLIMAFSLVVILLAERLALGRAP 563
[Close]
BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Match: UPI00124EC140 (ABC transporter permease subunit n=1 Tax=Brucella anthropi TaxID=529 RepID=UPI00124EC140)

HSP 1 Score: 157 bits (396), Expect = 1.410e-42
Identity = 77/134 (57.46%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:    1 TYWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRITLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSNPEQAAINLVYMTLIMGFSYIIISLADRFGLGGGP 402
            +YW+LPIG+ I  +PL+ RF+R+AF  +DP+  EAARA+GA   YRF R+ LP + P  ILVAGM FN++++EY +SAFL+NVNNKPL IA+ +GA S++P+QAAI+LVY+TLIM FS  II +A+R  LG  P
Sbjct:  431 SYWLLPIGYVIFSLPLMVRFMRSAFIGIDPAFEEAARAMGASGLYRFRRVILPLVAPTAILVAGMKFNSLMAEYPLSAFLYNVNNKPLPIAIVDGAVSADPDQAAISLVYVTLIMAFSLAIILVAERLSLGRTP 564
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100062.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C090B1E3.820e-6677.94iron ABC transporter permease n=1 Tax=Pacificibact... [more]
A0A7X4DSU7_9RHOB7.430e-5771.21Iron ABC transporter permease n=3 Tax=unclassified... [more]
A0A3S2UBJ5_9RHOB4.580e-5566.18Iron ABC transporter permease n=1 Tax=Rhodobactera... [more]
A0A0P7W9F4_9RHOB1.750e-4759.12Iron(III) transport system permease protein n=1 Ta... [more]
A0A2A3BW16_9HYPH9.270e-4761.76ABC transporter permease n=3 Tax=Mesorhizobium Tax... [more]
A0A068TGS7_NEOGA1.330e-4561.19Binding--dependent transport system inner membrane... [more]
A0A0M7ARH2_9HYPH2.580e-4555.88Putative 2-aminoethylphosphonate transport system ... [more]
UPI001F41D71F4.830e-4557.14ABC transporter permease subunit n=1 Tax=Rhizobium... [more]
UPI000FD5836B9.830e-4456.39ABC transporter permease subunit n=9 Tax=Sinorhizo... [more]
UPI00124EC1401.410e-4257.46ABC transporter permease subunit n=1 Tax=Brucella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100062contigM-pyrifera_M_contig100062:8..421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score165.6
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog1028801.RG1141_PA08200
Preferred nameftsK
KEGG koko:K02011,ko:K02012,ko:K03466
KEGG TC3.A.1.10,3.A.12
KEGG Pathwayko02010,map02010
KEGG ModuleM00190
Hectar predicted targeting categorysignal peptide
GOsGO:0000920,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006950,GO:0006970,GO:0007059,GO:0008094,GO:0008150,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015616,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033676,GO:0042221,GO:0042623,GO:0042802,GO:0043085,GO:0043565,GO:0044093,GO:0044425,GO:0044459,GO:0044464,GO:0045893,GO:0045935,GO:0046677,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051301,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071236,GO:0071944,GO:0080090,GO:0097159,GO:0140097,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Binding-protein-dependent transport system inner membrane component
EggNOG OGs1MWEV@1224,2TVQS@28211,4BIW9@82115,COG1178@1,COG1178@2
COG Functional cat.P
Best tax levelRhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03036
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.882575-CDS-M-pyrifera_M_contig100062:7..4211622815494.882575-CDS-M-pyrifera_M_contig100062:7..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100062 8..421 +
1692277437.465978-CDS-M-pyrifera_M_contig100062:7..4211692277437.465978-CDS-M-pyrifera_M_contig100062:7..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100062 8..421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100062.13.1prot_M-pyrifera_M_contig100062.13.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100062 8..421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100062.13.1

>prot_M-pyrifera_M_contig100062.13.1 ID=prot_M-pyrifera_M_contig100062.13.1|Name=mRNA_M-pyrifera_M_contig100062.13.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
TYWVLPIGFSIVVIPLVSRFLRAAFWSLDPSQIEAARALGAPPFYRFVRI
TLPAIMPVVILVAGMNFNTILSEYSMSAFLFNVNNKPLSIALFEGARSSN
PEQAAINLVYMTLIMGFSYIIISLADRFGLGGGPRRN*
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mRNA from alignment at M-pyrifera_M_contig100062:8..421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100062.13.1 ID=mRNA_M-pyrifera_M_contig100062.13.1|Name=mRNA_M-pyrifera_M_contig100062.13.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig100062:8..421+ (Macrocystis pyrifera P11B4 male)
ACCTATTGGGTCCTTCCCATAGGCTTCTCAATTGTCGTCATTCCTTTGGT
GAGCCGGTTTTTGCGGGCGGCATTCTGGTCTCTCGATCCCTCACAGATTG
AAGCAGCCCGGGCGCTTGGAGCACCACCATTCTATCGCTTTGTCAGAATT
ACACTTCCGGCGATCATGCCGGTCGTCATTCTGGTCGCGGGCATGAATTT
CAATACGATCCTGAGCGAATATTCCATGTCGGCATTTCTTTTCAACGTCA
ATAACAAGCCGCTATCGATTGCCCTTTTTGAGGGTGCCCGGTCCTCGAAC
CCGGAGCAGGCGGCTATAAATCTCGTCTACATGACCCTGATCATGGGGTT
TTCATACATAATCATCTCGCTAGCCGATCGGTTCGGGCTGGGCGGTGGTC
CGAGACGCAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100062:8..421+

>mRNA_M-pyrifera_M_contig100062.13.1 ID=mRNA_M-pyrifera_M_contig100062.13.1|Name=mRNA_M-pyrifera_M_contig100062.13.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig100062:8..421+ (Macrocystis pyrifera P11B4 male)
ACCTATTGGGTCCTTCCCATAGGCTTCTCAATTGTCGTCATTCCTTTGGT
GAGCCGGTTTTTGCGGGCGGCATTCTGGTCTCTCGATCCCTCACAGATTG
AAGCAGCCCGGGCGCTTGGAGCACCACCATTCTATCGCTTTGTCAGAATT
ACACTTCCGGCGATCATGCCGGTCGTCATTCTGGTCGCGGGCATGAATTT
CAATACGATCCTGAGCGAATATTCCATGTCGGCATTTCTTTTCAACGTCA
ATAACAAGCCGCTATCGATTGCCCTTTTTGAGGGTGCCCGGTCCTCGAAC
CCGGAGCAGGCGGCTATAAATCTCGTCTACATGACCCTGATCATGGGGTT
TTCATACATAATCATCTCGCTAGCCGATCGGTTCGGGCTGGGCGGTGGTC
CGAGACGCAACTGAACCTATTGGGTCCTTCCCATAGGCTTCTCAATTGTC
GTCATTCCTTTGGTGAGCCGGTTTTTGCGGGCGGCATTCTGGTCTCTCGA
TCCCTCACAGATTGAAGCAGCCCGGGCGCTTGGAGCACCACCATTCTATC
GCTTTGTCAGAATTACACTTCCGGCGATCATGCCGGTCGTCATTCTGGTC
GCGGGCATGAATTTCAATACGATCCTGAGCGAATATTCCATGTCGGCATT
TCTTTTCAACGTCAATAACAAGCCGCTATCGATTGCCCTTTTTGAGGGTG
CCCGGTCCTCGAACCCGGAGCAGGCGGCTATAAATCTCGTCTACATGACC
CTGATCATGGGGTTTTCATACATAATCATCTCGCTAGCCGATCGGTTCGG
GCTGGGCGGTGGTCCGAGACGCAACTGA
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