mRNA_L-elsbetiae_contig17598.4963.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17598.4963.1
Unique NamemRNA_L-elsbetiae_contig17598.4963.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: D7FZ58_ECTSI (Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ58_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.890e-36
Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            +GYYLKR+SKGYVFR SPKPWEALLEKPGGGLE+LGKYN+KPLLR+VAK+VRSESMKRFGMSNDRW
Sbjct:  240 QGYYLKRVSKGYVFRVSPKPWEALLEKPGGGLEILGKYNEKPLLRNVAKVVRSESMKRFGMSNDRW 305
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: K0RRV6_THAOC (DUF1995 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RRV6_THAOC)

HSP 1 Score: 97.1 bits (240), Expect = 6.240e-25
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKRIS+G+VFRA P PW+A+LEKP G +EVL +Y DKP LR+VA++VR ES KR+ + NDRW
Sbjct:   19 EAYYLKRISRGFVFRAFPGPWQAVLEKPDGSVEVLKEYKDKPRLREVAELVREESYKRYAIGNDRW 84
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A7S2PA83_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PA83_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.130e-22
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 YYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            YYLKRISKG+VFR+ P PW+A LEKP GG+E+L  Y+ KP LRD A +VR ES KRF ++NDRW
Sbjct:  224 YYLKRISKGWVFRSYPGPWQAYLEKPDGGVELLKSYSSKPSLRDCATLVREESFKRFAINNDRW 287
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A6U6DJL4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DJL4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.880e-22
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKRISKG+VFR+ P PWEA LEKP G  E+L  Y  KPLLRDVA  VR ES KR+ +SNDRW
Sbjct:  223 EAYYLKRISKGWVFRSFPGPWEAYLEKPDGTCELLKSYKTKPLLRDVANEVREESFKRYAISNDRW 288
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A7S2MI61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MI61_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.510e-21
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKRISKG+VFR+ P PW+A LE+P G +E+L  Y  KP LRDVA IVR ES KR+ ++NDRW
Sbjct:  230 EAYYLKRISKGWVFRSFPGPWQAYLERPDGTVELLKSYKSKPALRDVATIVREESFKRYAINNDRW 295
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A7S1UZ45_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ45_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.320e-21
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKRISKG+VFRA P PW+A LE+P G +E++  Y  KP LRDVA +VR ES KR+ ++NDRW
Sbjct:  192 EAYYLKRISKGWVFRAFPGPWQAYLERPDGKVELMKSYKKKPQLRDVATLVREESFKRYAINNDRW 257
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A7S1Y7W8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7W8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.090e-21
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKRISKG+VFRA P PW+A LE+P G +E++  Y  KP LRDVA +VR ES KR+ ++NDRW
Sbjct:  200 EAYYLKRISKGWVFRAFPGPWQAYLERPDGKVELMKSYKKKPQLRDVATLVREESFKRYAINNDRW 265
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A6S9J3V2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9J3V2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.480e-21
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKR+SKG+VFR+ P PW+A LEKP G +E+L  Y +KP LR++A +VR ES KR+ ++NDRW
Sbjct:  155 EAYYLKRVSKGWVFRSYPGPWQAYLEKPDGTVELLKSYKNKPPLREIAALVREESFKRYAINNDRW 220
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A7S3Q0R4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0R4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.960e-21
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKR+SKG+++RA P PWEA LEKP G +E+L  +  KPLLR+V+ +VR ES KR+ ++NDRW
Sbjct:  217 EAYYLKRVSKGWIYRAYPGPWEAYLEKPDGNVELLQSFKTKPLLREVSALVRDESFKRYAINNDRW 282
[Close]
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Match: A0A7S1Z767_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z767_TRICV)

HSP 1 Score: 90.5 bits (223), Expect = 2.280e-20
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKIVRSESMKRFGMSNDRW 198
            + YYLKRISKG+V+RA P PWEA LEKP G +E+L  Y  KP LR+V+  VR ES KR+ ++NDRW
Sbjct:  223 EAYYLKRISKGWVYRAFPGPWEAYLEKPDGNVELLKSYRSKPSLREVSNEVREESFKRYAINNDRW 288
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17598.4963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ58_ECTSI1.890e-3689.39Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
K0RRV6_THAOC6.240e-2563.64DUF1995 domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S2PA83_9STRA4.130e-2265.63Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A6U6DJL4_9STRA5.880e-2266.67Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2MI61_9STRA3.510e-2162.12Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1UZ45_9STRA5.320e-2160.61Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1Y7W8_9STRA6.090e-2160.61Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6S9J3V2_9STRA7.480e-2157.58Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3Q0R4_9STRA7.960e-2157.58Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1Z767_TRICV2.280e-2060.61Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17598contigL-elsbetiae_contig17598:1298..2181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue5.5e-29
Seed eggNOG ortholog2880.D7FZ58
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1995)
EggNOG OGs2BHAJ@1,2S1BD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_006370.1
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.5706549-CDS-L-elsbetiae_contig17598:1297..14441622815732.5706549-CDS-L-elsbetiae_contig17598:1297..1444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17598 1298..1444 +
1691683066.9248624-CDS-L-elsbetiae_contig17598:1297..14441691683066.9248624-CDS-L-elsbetiae_contig17598:1297..1444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17598 1298..1444 +
1622815732.5843918-CDS-L-elsbetiae_contig17598:2130..21811622815732.5843918-CDS-L-elsbetiae_contig17598:2130..2181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17598 2131..2181 +
1691683066.9368515-CDS-L-elsbetiae_contig17598:2130..21811691683066.9368515-CDS-L-elsbetiae_contig17598:2130..2181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17598 2131..2181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17598.4963.1prot_L-elsbetiae_contig17598.4963.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17598 1298..2181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17598.4963.1

>prot_L-elsbetiae_contig17598.4963.1 ID=prot_L-elsbetiae_contig17598.4963.1|Name=mRNA_L-elsbetiae_contig17598.4963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
KGYYLKRISKGYVFRASPKPWEALLEKPGGGLEVLGKYNDKPLLRDVAKI
VRSESMKRFGMSNDRW
back to top

mRNA from alignment at L-elsbetiae_contig17598:1298..2181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17598.4963.1 ID=mRNA_L-elsbetiae_contig17598.4963.1|Name=mRNA_L-elsbetiae_contig17598.4963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=884bp|location=Sequence derived from alignment at L-elsbetiae_contig17598:1298..2181+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGCTACTACCTGAAGCGAATCAGCAAGGGTTACGTCTTCCGCGCGTC
TCCCAAGCCGTGGGAGGCCTTGCTCGAGAAGCCGGGAGGGGGTCTGGAAG
TTCTCGGCAAGTACAACGACAAGCCTTTGCTGAGAGACGTGGCGAAGGTG
CGAATATTACTGTATGCATAGGCCTCTCTAACACACCGCTTCTATTTCTT
ATTTATTTTTTCACTGTACTGTAGTACTGCTGTACGTCAGCCGTCCGCAC
CCGGCCTGTGAAAAAAGTGTTTTCAAGGGAACTGTTGCAGACCCAATATC
CCCCCCTCATCGCCGTCAGTGTTTTGGGTTCTTACTTGTTGCTATGAGGT
ATGTTACAAAATATCAATAATTGAATTGTAGCACTTCGTGAACACCGCAT
GTCTGCCCTTGGCGCCTACTACTGTGCGTTTATTACCTTGAGTTCTTTGG
TATTCACACCGCCGAAACACTGTATATTTTTCATGGAGTAGAAGCACATG
GCGATTTCAATCAACGCATGGCACAATCCAATCTGCCCGCCGATCAAGTT
GGCACCAAGTAGTTCAACTCCCGTACTACCAGAAGATATCCGCGGCCTTT
TCCGCCAACCTGCGTCCAACTTACGCTAGTTCCTGCATGTCGCGCACACC
TGATCATCGGTCGTAGTTAGAGTGGTTTGACCCCAACAAGTTCTACCAAA
GCTGTTGAGTCCATTATACCCCCAGAGTGGAAATGGTGTGTTGTTGGTAC
CTGCACGTTATCTCTCCGTGGTGGATTTGTTGACCATGGACCGAAAATAC
TCGTTACTTTGGAACCCCCGTCACCCTCGGCAGATTGTACGTAGTGAGAG
CATGAAGCGGTTCGGCATGTCCAACGACCGCTGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17598:1298..2181+

>mRNA_L-elsbetiae_contig17598.4963.1 ID=mRNA_L-elsbetiae_contig17598.4963.1|Name=mRNA_L-elsbetiae_contig17598.4963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig17598:1298..2181+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGCTACTACCTGAAGCGAATCAGCAAGGGTTACGTCTTCCGCGCGTC
TCCCAAGCCGTGGGAGGCCTTGCTCGAGAAGCCGGGAGGGGGTCTGGAAG
TTCTCGGCAAGTACAACGACAAGCCTTTGCTGAGAGACGTGGCGAAGAAG
GGCTACTACCTGAAGCGAATCAGCAAGGGTTACGTCTTCCGCGCGTCTCC
CAAGCCGTGGGAGGCCTTGCTCGAGAAGCCGGGAGGGGGTCTGGAAGTTC
TCGGCAAGTACAACGACAAGCCTTTGCTGAGAGACGTGGCGAAGATTGTA
CGTAGTGAGAGCATGAAGCGGTTCGGCATGTCCAACGACCGCTGGATTGT
ACGTAGTGAGAGCATGAAGCGGTTCGGCATGTCCAACGACCGCTGG
back to top